| Title : Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis - Crits-Christoph_2018_Nature_558_440 |
| Author(s) : Crits-Christoph A , Diamond S , Butterfield CN , Thomas BC , Banfield JF |
| Ref : Nature , 558 :440 , 2018 |
| Abstract : |
| PubMedSearch : Crits-Christoph_2018_Nature_558_440 |
| PubMedID: 29899444 |
| Gene_locus related to this paper: 9bact-a0a2v8qcw8 |
| Title : Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments - Hernsdorf_2017_ISME.J_11_1915 |
| Author(s) : Hernsdorf AW , Amano Y , Miyakawa K , Ise K , Suzuki Y , Anantharaman K , Probst A , Burstein D , Thomas BC , Banfield JF |
| Ref : Isme J , 11 :1915 , 2017 |
| Abstract : |
| PubMedSearch : Hernsdorf_2017_ISME.J_11_1915 |
| PubMedID: 28350393 |
| Gene_locus related to this paper: 9eury-a0a2i0pxa9 , 9spir-a0a2n1tka6 , 9firm-a0a2n2bq22 , 9firm-a0a2n2cxr7 , 9prot-a0a2n3dmk3 , 9delt-a0a2n2m1c4 , 9bact-a0a2i0q977 , 9bact-a0a2n1vaz9 , 9bact-a0a2n2vup6 , 9bact-a0a2n2w5u3 , 9bact-a0a2n2wjd9 , 9bact-a0a2n2wss4 , 9bact-a0a2n2xcb2 , 9bact-a0a2n2ylq2 , 9bact-a0a2n2yyx7 , 9bact-a0a2n2z6r2 , 9bact-a0a2n2ziv6 , 9bact-a0a2n3aau1 |
| Title : Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders - Hu_2017_Proc.Natl.Acad.Sci.U.S.A_114_7432 |
| Author(s) : Hu P , Dubinsky EA , Probst AJ , Wang J , Sieber CMK , Tom LM , Gardinali PR , Banfield JF , Atlas RM , Andersen GL |
| Ref : Proc Natl Acad Sci U S A , 114 :7432 , 2017 |
| Abstract : |
| PubMedSearch : Hu_2017_Proc.Natl.Acad.Sci.U.S.A_114_7432 |
| PubMedID: 28652349 |
| Gene_locus related to this paper: 9gamm-a0a1y5gx26 , 9gamm-a0a1z7ys35 , 9gamm-a0a1z7yxg3 , 9gamm-a0a1y5fvt2 , 9gamm-a0a1y5gtm5 , 9flao-a0a1z7zjx1 |
| Title : Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations - Probst_2017_Environ.Microbiol_19_459 |
| Author(s) : Probst AJ , Castelle CJ , Singh A , Brown CT , Anantharaman K , Sharon I , Hug LA , Burstein D , Emerson JB , Thomas BC , Banfield JF |
| Ref : Environ Microbiol , 19 :459 , 2017 |
| Abstract : |
| PubMedSearch : Probst_2017_Environ.Microbiol_19_459 |
| PubMedID: 27112493 |
| Gene_locus related to this paper: 9bact-a0a1j5b1a3 , 9delt-a0a1j5dck5 , 9bact-a0a1j4sae3 , 9bact-a0a1j4vix4 , 9bact-a0a1j5a4q9 , 9bact-a0a1j5acn2 , 9bact-a0a1j5ba31 , 9delt-a0a1j4sq21 , 9bact-a0a1j5fm19 , 9delt-a0a1j5edt4 , 9delt-a0a1j5dgg6 , 9gamm-a0a1j5ij09 , 9prot-a0a1j4y0r0 , 9bact-a0a1j4x4y9 |
| Title : Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs - Hu_2016_MBio_7_e01669 |
| Author(s) : Hu P , Tom L , Singh A , Thomas BC , Baker BJ , Piceno YM , Andersen GL , Banfield JF |
| Ref : MBio , 7 :e01669 , 2016 |
| Abstract : |
| PubMedSearch : Hu_2016_MBio_7_e01669 |
| PubMedID: 26787827 |
| Gene_locus related to this paper: 9psed-a0a101db53 , 9gamm-a0a124f6b0 |
| Title : Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage - Mosier_2016_Front.Microbiol_7_238 |
| Author(s) : Mosier AC , Miller CS , Frischkorn KR , Ohm RA , Li Z , LaButti K , Lapidus A , Lipzen A , Chen C , Johnson J , Lindquist EA , Pan C , Hettich RL , Grigoriev IV , Singer SW , Banfield JF |
| Ref : Front Microbiol , 7 :238 , 2016 |
| Abstract : |
| PubMedSearch : Mosier_2016_Front.Microbiol_7_238 |
| PubMedID: 26973616 |
| Gene_locus related to this paper: 9pezi-a0a150vf31 , 9pezi-a0a150uua7 , 9pezi-a0a150uvr8 , 9pezi-a0a150uzg0 , 9pezi-a0a150v0d4 , 9pezi-a0a150v5h7 , 9pezi-a0a150v662 , 9pezi-a0a150v8z3 , 9pezi-a0a150v9v5 , 9pezi-a0a150vc68 , 9pezi-a0a150vcp1 , 9pezi-a0a150vd70 , 9pezi-a0a150vda0 , 9pezi-a0a150vgv5 , 9pezi-a0a150vil1 , 9pezi-a0a150uu68 , 9pezi-a0a150vas8 , 9pezi-a0a150vji1 , 9pezi-a0a150vii2 |
| Title : Measurement of bacterial replication rates in microbial communities - Brown_2016_Nat.Biotechnol_34_1256 |
| Author(s) : Brown CT , Olm MR , Thomas BC , Banfield JF |
| Ref : Nat Biotechnol , 34 :1256 , 2016 |
| Abstract : |
| PubMedSearch : Brown_2016_Nat.Biotechnol_34_1256 |
| PubMedID: 27819664 |
| Gene_locus related to this paper: 9prot-a0a1q6t442 , 9prot-a0a1q6u8x3 , 9bace-a0a1q6gjr4 , 9bace-a0a1q6hct0 , 9bact-a0a1q6ink8 , 9bact-a0a1u7l8f4 |
| Title : Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone - Butterfield_2016_PeerJ_4_e2687 |
| Author(s) : Butterfield CN , Li Z , Andeer PF , Spaulding S , Thomas BC , Singh A , Hettich RL , Suttle KB , Probst AJ , Tringe SG , Northen T , Pan C , Banfield JF |
| Ref : PeerJ , 4 :e2687 , 2016 |
| Abstract : |
| PubMedSearch : Butterfield_2016_PeerJ_4_e2687 |
| PubMedID: 27843720 |
| Gene_locus related to this paper: 9gamm-a0a1q6wqt1 , 9bact-a0a1q6y4g7 , 9prot-a0a1q7tw10 , 9bact-a0a1q6xg26 , 9actn-a0a1q7axs7 , 9actn-a0a1q7vz10 |
| Title : Unusual biology across a group comprising more than 15\% of domain Bacteria - Brown_2015_Nature_523_208 |
| Author(s) : Brown CT , Hug LA , Thomas BC , Sharon I , Castelle CJ , Singh A , Wilkins MJ , Wrighton KC , Williams KH , Banfield JF |
| Ref : Nature , 523 :208 , 2015 |
| Abstract : |
| PubMedSearch : Brown_2015_Nature_523_208 |
| PubMedID: 26083755 |
| Gene_locus related to this paper: 9bact-a0a0f9xu71 , 9bact-a0a0g0gp54 , 9bact-a0a0g0gs51 , 9bact-a0a0g0xj38 , 9bact-a0a0g1hul2 |
| Title : Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics - Kantor_2015_Environ.Microbiol_17_4929 |
| Author(s) : Kantor RS , van Zyl AW , van Hille RP , Thomas BC , Harrison ST , Banfield JF |
| Ref : Environ Microbiol , 17 :4929 , 2015 |
| Abstract : |
| PubMedSearch : Kantor_2015_Environ.Microbiol_17_4929 |
| PubMedID: 26031303 |
| Gene_locus related to this paper: 9caul-a0a1d2tqz4 , 9caul-a0a1e4gzy2 , 9bact-a0a1e3ync8 , 9rhiz-a0a1e3ylc0 , 9bact-a0a1e4b8y1 , 9bact-a0a1e4b9g4 , 9caul-a0a1e4gyx0 , 9gamm-a0a1e4h6l7 , 9sphn-a0a1e4jga9 , 9gamm-a0a1e4kb00 , 9sphn-a0a1e4md43 , 9gamm-a0a1e4mlb4 , 9prot-a0a1e4pmm4 , 9bact-a0a1e4b938 , 9bact-a0a1e4hnf4 , 9pseu-a0a1e4hu48 , 9sphn-a0a1e4mug8 , 9pseu-a0a1e4ph68 , 9rhiz-a0a1e4fd43 , 9sphn-a0a1e4n749 , 9sphn-a0a1e4jgg3 , 9caul-a0a1e4gst4 , 9gamm-a0a1e4hig1 |
| Title : Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote - Schonknecht_2013_Science_339_1207 |
| Author(s) : Schonknecht G , Chen WH , Ternes CM , Barbier GG , Shrestha RP , Stanke M , Brautigam A , Baker BJ , Banfield JF , Garavito RM , Carr K , Wilkerson C , Rensing SA , Gagneul D , Dickenson NE , Oesterhelt C , Lercher MJ , Weber AP |
| Ref : Science , 339 :1207 , 2013 |
| Abstract : |
| PubMedSearch : Schonknecht_2013_Science_339_1207 |
| PubMedID: 23471408 |
| Gene_locus related to this paper: galsu-m2y8v3 , galsu-m2xs14 , galsu-m2w341 |
| Title : Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla - Wrighton_2012_Science_337_1661 |
| Author(s) : Wrighton KC , Thomas BC , Sharon I , Miller CS , Castelle CJ , VerBerkmoes NC , Wilkins MJ , Hettich RL , Lipton MS , Williams KH , Long PE , Banfield JF |
| Ref : Science , 337 :1661 , 2012 |
| Abstract : |
| PubMedSearch : Wrighton_2012_Science_337_1661 |
| PubMedID: 23019650 |
| Gene_locus related to this paper: acijo-d0s8f2 , 9bact-k2eq93 , 9bact-k1ymn0 , 9bact-k2ehy0 , 9gamm-n9p1u1 , 9bact-k2cj78 , 9bact-k2dnl8 , 9bact-k2f369 , 9bact-k2f264 , 9bact-k2gak8 , 9bact-k2age0 , 9bact-k2fcq4 , 9bact-k2fvb3 , 9zzzz-k2eg80 , 9bact-k1yi15 |
| Title : Enigmatic, ultrasmall, uncultivated Archaea - Baker_2010_Proc.Natl.Acad.Sci.U.S.A_107_8806 |
| Author(s) : Baker BJ , Comolli LR , Dick GJ , Hauser LJ , Hyatt D , Dill BD , Land ML , VerBerkmoes NC , Hettich RL , Banfield JF |
| Ref : Proc Natl Acad Sci U S A , 107 :8806 , 2010 |
| Abstract : |
| PubMedSearch : Baker_2010_Proc.Natl.Acad.Sci.U.S.A_107_8806 |
| PubMedID: 20421484 |
| Gene_locus related to this paper: 9eury-c7dfz3 , 9eury-c7dg61 , 9eury-c7dge3 , 9eury-c7dhl2 , 9eury-c7dhn0 , 9eury-d6gve8 , 9eury-d6gvf6 |
| Title : Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing Leptospirillum rubarum (Group II) and Leptospirillum ferrodiazotrophum (Group III) bacteria in acid mine drainage biofilms - Goltsman_2009_Appl.Environ.Microbiol_75_4599 |
| Author(s) : Goltsman DS , Denef VJ , Singer SW , VerBerkmoes NC , Lefsrud M , Mueller RS , Dick GJ , Sun CL , Wheeler KE , Zemla A , Baker BJ , Hauser L , Land M , Shah MB , Thelen MP , Hettich RL , Banfield JF |
| Ref : Applied Environmental Microbiology , 75 :4599 , 2009 |
| Abstract : |
| PubMedSearch : Goltsman_2009_Appl.Environ.Microbiol_75_4599 |
| PubMedID: 19429552 |
| Title : Community-wide analysis of microbial genome sequence signatures - Dick_2009_Genome.Biol_10_R85 |
| Author(s) : Dick GJ , Andersson AF , Baker BJ , Simmons SL , Thomas BC , Yelton AP , Banfield JF |
| Ref : Genome Biol , 10 :R85 , 2009 |
| Abstract : |
| PubMedSearch : Dick_2009_Genome.Biol_10_R85 |
| PubMedID: 19698104 |
| Gene_locus related to this paper: 9eury-c7dfz3 , 9eury-c7dg61 , 9eury-c7dge3 , 9eury-c7dhl2 , 9eury-c7dhn0 |
| Title : Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation - Simmons_2008_PLoS.Biol_6_e177 |
| Author(s) : Simmons SL , DiBartolo G , Denef VJ , Goltsman DS , Thelen MP , Banfield JF |
| Ref : PLoS Biol , 6 :e177 , 2008 |
| Abstract : |
| PubMedSearch : Simmons_2008_PLoS.Biol_6_e177 |
| PubMedID: 18651792 |
| Title : Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria - Lo_2007_Nature_446_537 |
| Author(s) : Lo I , Denef VJ , VerBerkmoes NC , Shah MB , Goltsman D , DiBartolo G , Tyson GW , Allen EE , Ram RJ , Detter JC , Richardson P , Thelen MP , Hettich RL , Banfield JF |
| Ref : Nature , 446 :537 , 2007 |
| Abstract : |
| PubMedSearch : Lo_2007_Nature_446_537 |
| PubMedID: 17344860 |
| Title : Community structure and metabolism through reconstruction of microbial genomes from the environment - Tyson_2004_Nature_428_37 |
| Author(s) : Tyson GW , Chapman J , Hugenholtz P , Allen EE , Ram RJ , Richardson PM , Solovyev VV , Rubin EM , Rokhsar DS , Banfield JF |
| Ref : Nature , 428 :37 , 2004 |
| Abstract : |
| PubMedSearch : Tyson_2004_Nature_428_37 |
| PubMedID: 14961025 |