| Title : Computationally guided genome rewiring of Escherichia coli and its application for nanopolyethylene terephthalate (PET) biodegradation and upcycling - Vidal_2025_Trends.Biotechnol__ |
| Author(s) : Vidal P , Gimenez-Dejoz J , Fernandez-Lopez L , Romero S , Nazemi SA , Luengo M , Gonzalez-Alfonso JL , Martinez-Sugranes M , Robles-Martin A , Almendral D , Roda S , Perez-Garcia P , Kruse L , Jaeger KE , Streit WR , Plou FJ , Floor M , Shahgaldian P , Bargiela R , Guallar V , Ferrer M |
| Ref : Trends Biotechnol , : , 2025 |
| Abstract : |
| PubMedSearch : Vidal_2025_Trends.Biotechnol__ |
| PubMedID: 40817029 |
| Title : Computationally guided genome rewiring of Escherichia coli and its application for nanopolyethylene terephthalate (PET) biodegradation and upcycling - Vidal_2025_Trends.Biotechnol__ |
| Author(s) : Vidal P , Gimenez-Dejoz J , Fernandez-Lopez L , Romero S , Nazemi SA , Luengo M , Gonzalez-Alfonso JL , Martinez-Sugranes M , Robles-Martin A , Almendral D , Roda S , Perez-Garcia P , Kruse L , Jaeger KE , Streit WR , Plou FJ , Floor M , Shahgaldian P , Bargiela R , Guallar V , Ferrer M |
| Ref : Trends Biotechnol , : , 2025 |
| Abstract : |
| PubMedSearch : Vidal_2025_Trends.Biotechnol__ |
| PubMedID: 40817029 |
| Title : Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores - Robles-Martin_2025_Nat.Catal_6_1174 |
| Author(s) : Robles-Martin A , Amigot-Sanchez R , Fernandez-Lopez L , Gonzalez-Alfonso JL , Roda S , Alcolea-Rodriguez V , Heras-Marquez D , Almendral D , Coscoln C , Plou FJ , Portela R , Banares MA , Martinez-del-Pozo A , Garcia-Linares S , Ferrer M , Guallar V |
| Ref : , 6 :1174 , 2025 |
| Abstract : |
| PubMedSearch : Robles-Martin_2025_Nat.Catal_6_1174 |
| PubMedID: |
| Title : Computationally guided genome rewiring of Escherichia coli and its application for nanopolyethylene terephthalate (PET) biodegradation and upcycling - Vidal_2025_Trends.Biotechnol__ |
| Author(s) : Vidal P , Gimenez-Dejoz J , Fernandez-Lopez L , Romero S , Nazemi SA , Luengo M , Gonzalez-Alfonso JL , Martinez-Sugranes M , Robles-Martin A , Almendral D , Roda S , Perez-Garcia P , Kruse L , Jaeger KE , Streit WR , Plou FJ , Floor M , Shahgaldian P , Bargiela R , Guallar V , Ferrer M |
| Ref : Trends Biotechnol , : , 2025 |
| Abstract : |
| PubMedSearch : Vidal_2025_Trends.Biotechnol__ |
| PubMedID: 40817029 |
| Title : Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores - Robles-Martin_2025_Nat.Catal_6_1174 |
| Author(s) : Robles-Martin A , Amigot-Sanchez R , Fernandez-Lopez L , Gonzalez-Alfonso JL , Roda S , Alcolea-Rodriguez V , Heras-Marquez D , Almendral D , Coscoln C , Plou FJ , Portela R , Banares MA , Martinez-del-Pozo A , Garcia-Linares S , Ferrer M , Guallar V |
| Ref : , 6 :1174 , 2025 |
| Abstract : |
| PubMedSearch : Robles-Martin_2025_Nat.Catal_6_1174 |
| PubMedID: |
| Title : Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores - Robles-Martin_2025_Nat.Catal_6_1174 |
| Author(s) : Robles-Martin A , Amigot-Sanchez R , Fernandez-Lopez L , Gonzalez-Alfonso JL , Roda S , Alcolea-Rodriguez V , Heras-Marquez D , Almendral D , Coscoln C , Plou FJ , Portela R , Banares MA , Martinez-del-Pozo A , Garcia-Linares S , Ferrer M , Guallar V |
| Ref : , 6 :1174 , 2025 |
| Abstract : |
| PubMedSearch : Robles-Martin_2025_Nat.Catal_6_1174 |
| PubMedID: |
| Title : Enhancing the Hydrolytic Activity of a Lipase towards Larger Triglycerides through Lid Domain Engineering - Fernandez-Lopez_2023_Int.J.Mol.Sci_24_13768 |
| Author(s) : Fernandez-Lopez L , Roda S , Robles-Martin A , Munoz-Tafalla R , Almendral D , Ferrer M , Guallar V |
| Ref : Int J Mol Sci , 24 : , 2023 |
| Abstract : |
| PubMedSearch : Fernandez-Lopez_2023_Int.J.Mol.Sci_24_13768 |
| PubMedID: 37762071 |
| Gene_locus related to this paper: 9pseu-a0a1l7F3D7 |
| Title : Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores - Robles-Martin_2023_Nat.Catal_6_1174 |
| Author(s) : Robles-Martin A , Amigot-Sanchez R , Fernandez-Lopez L , Gonzalez-Alfonso JL , Roda S , Alcolea-Rodriguez V , Heras-Marquez D , Almendral D , Coscolin C , Plou FJ , Portela R , Banares MA , Martinez-del-Pozo A , Garca-Linares S , Ferrer M , Guallar V |
| Ref : Nature Catalysis , 6 :1174 , 2023 |
| Abstract : |
| PubMedSearch : Robles-Martin_2023_Nat.Catal_6_1174 |
| PubMedID: |
| Title : AsiteDesign: a Semirational Algorithm for an Automated Enzyme Design - Roda_2023_J.Phys.Chem.B__ |
| Author(s) : Roda S , Terholsen H , Meyer JRH , Canellas-Sole A , Guallar V , Bornscheuer U , Kazemi M |
| Ref : J Phys Chem B , : , 2023 |
| Abstract : |
| PubMedSearch : Roda_2023_J.Phys.Chem.B__ |
| PubMedID: 36944360 |
| Gene_locus related to this paper: psefl-este |
| Title : Enhancing the Hydrolytic Activity of a Lipase towards Larger Triglycerides through Lid Domain Engineering - Fernandez-Lopez_2023_Int.J.Mol.Sci_24_13768 |
| Author(s) : Fernandez-Lopez L , Roda S , Robles-Martin A , Munoz-Tafalla R , Almendral D , Ferrer M , Guallar V |
| Ref : Int J Mol Sci , 24 : , 2023 |
| Abstract : |
| PubMedSearch : Fernandez-Lopez_2023_Int.J.Mol.Sci_24_13768 |
| PubMedID: 37762071 |
| Gene_locus related to this paper: 9pseu-a0a1l7F3D7 |
| Title : AsiteDesign: a Semirational Algorithm for an Automated Enzyme Design - Roda_2023_J.Phys.Chem.B__ |
| Author(s) : Roda S , Terholsen H , Meyer JRH , Canellas-Sole A , Guallar V , Bornscheuer U , Kazemi M |
| Ref : J Phys Chem B , : , 2023 |
| Abstract : |
| PubMedSearch : Roda_2023_J.Phys.Chem.B__ |
| PubMedID: 36944360 |
| Gene_locus related to this paper: psefl-este |
| Title : AsiteDesign: a Semirational Algorithm for an Automated Enzyme Design - Roda_2023_J.Phys.Chem.B__ |
| Author(s) : Roda S , Terholsen H , Meyer JRH , Canellas-Sole A , Guallar V , Bornscheuer U , Kazemi M |
| Ref : J Phys Chem B , : , 2023 |
| Abstract : |
| PubMedSearch : Roda_2023_J.Phys.Chem.B__ |
| PubMedID: 36944360 |
| Gene_locus related to this paper: psefl-este |
| Title : Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores - Robles-Martin_2023_Nat.Catal_6_1174 |
| Author(s) : Robles-Martin A , Amigot-Sanchez R , Fernandez-Lopez L , Gonzalez-Alfonso JL , Roda S , Alcolea-Rodriguez V , Heras-Marquez D , Almendral D , Coscolin C , Plou FJ , Portela R , Banares MA , Martinez-del-Pozo A , Garca-Linares S , Ferrer M , Guallar V |
| Ref : Nature Catalysis , 6 :1174 , 2023 |
| Abstract : |
| PubMedSearch : Robles-Martin_2023_Nat.Catal_6_1174 |
| PubMedID: |
| Title : Enhancing the Hydrolytic Activity of a Lipase towards Larger Triglycerides through Lid Domain Engineering - Fernandez-Lopez_2023_Int.J.Mol.Sci_24_13768 |
| Author(s) : Fernandez-Lopez L , Roda S , Robles-Martin A , Munoz-Tafalla R , Almendral D , Ferrer M , Guallar V |
| Ref : Int J Mol Sci , 24 : , 2023 |
| Abstract : |
| PubMedSearch : Fernandez-Lopez_2023_Int.J.Mol.Sci_24_13768 |
| PubMedID: 37762071 |
| Gene_locus related to this paper: 9pseu-a0a1l7F3D7 |
| Title : Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores - Robles-Martin_2023_Nat.Catal_6_1174 |
| Author(s) : Robles-Martin A , Amigot-Sanchez R , Fernandez-Lopez L , Gonzalez-Alfonso JL , Roda S , Alcolea-Rodriguez V , Heras-Marquez D , Almendral D , Coscolin C , Plou FJ , Portela R , Banares MA , Martinez-del-Pozo A , Garca-Linares S , Ferrer M , Guallar V |
| Ref : Nature Catalysis , 6 :1174 , 2023 |
| Abstract : |
| PubMedSearch : Robles-Martin_2023_Nat.Catal_6_1174 |
| PubMedID: |
| Title : EP-Pred: A Machine Learning Tool for Bioprospecting Promiscuous Ester Hydrolases - Xiang_2022_Biomolecules_12_ |
| Author(s) : Xiang R , Fernandez-Lopez L , Robles-Martin A , Ferrer M , Guallar V |
| Ref : Biomolecules , 12 : , 2022 |
| Abstract : |
| PubMedSearch : Xiang_2022_Biomolecules_12_ |
| PubMedID: 36291739 |
| Title : EP-Pred: A Machine Learning Tool for Bioprospecting Promiscuous Ester Hydrolases - Xiang_2022_Biomolecules_12_ |
| Author(s) : Xiang R , Fernandez-Lopez L , Robles-Martin A , Ferrer M , Guallar V |
| Ref : Biomolecules , 12 : , 2022 |
| Abstract : |
| PubMedSearch : Xiang_2022_Biomolecules_12_ |
| PubMedID: 36291739 |
| Title : Metagenomic Mining for Esterases in the Microbial Community of Los Rueldos Acid Mine Drainage Formation - Vidal_2022_Front.Microbiol_13_868839 |
| Author(s) : Vidal P , Martinez-Martinez M , Fernandez-Lopez L , Roda S , Mendez-Garcia C , Golyshina OV , Guallar V , Pelaez AI , Ferrer M |
| Ref : Front Microbiol , 13 :868839 , 2022 |
| Abstract : |
| PubMedSearch : Vidal_2022_Front.Microbiol_13_868839 |
| PubMedID: 35663881 |
| Gene_locus related to this paper: 9zzzz-t1a3k4 , 9zzzz-t1ci96 , 9zzzz-t1b379 , 9zzzz-t1be47 , 9zzzz-t1d4I7 , 9actn-KY010298 , 9bact-KY010297 |
| Title : Metagenomic Mining for Esterases in the Microbial Community of Los Rueldos Acid Mine Drainage Formation - Vidal_2022_Front.Microbiol_13_868839 |
| Author(s) : Vidal P , Martinez-Martinez M , Fernandez-Lopez L , Roda S , Mendez-Garcia C , Golyshina OV , Guallar V , Pelaez AI , Ferrer M |
| Ref : Front Microbiol , 13 :868839 , 2022 |
| Abstract : |
| PubMedSearch : Vidal_2022_Front.Microbiol_13_868839 |
| PubMedID: 35663881 |
| Gene_locus related to this paper: 9zzzz-t1a3k4 , 9zzzz-t1ci96 , 9zzzz-t1b379 , 9zzzz-t1be47 , 9zzzz-t1d4I7 , 9actn-KY010298 , 9bact-KY010297 |
| Title : Metagenomic Mining for Esterases in the Microbial Community of Los Rueldos Acid Mine Drainage Formation - Vidal_2022_Front.Microbiol_13_868839 |
| Author(s) : Vidal P , Martinez-Martinez M , Fernandez-Lopez L , Roda S , Mendez-Garcia C , Golyshina OV , Guallar V , Pelaez AI , Ferrer M |
| Ref : Front Microbiol , 13 :868839 , 2022 |
| Abstract : |
| PubMedSearch : Vidal_2022_Front.Microbiol_13_868839 |
| PubMedID: 35663881 |
| Gene_locus related to this paper: 9zzzz-t1a3k4 , 9zzzz-t1ci96 , 9zzzz-t1b379 , 9zzzz-t1be47 , 9zzzz-t1d4I7 , 9actn-KY010298 , 9bact-KY010297 |
| Title : EP-Pred: A Machine Learning Tool for Bioprospecting Promiscuous Ester Hydrolases - Xiang_2022_Biomolecules_12_ |
| Author(s) : Xiang R , Fernandez-Lopez L , Robles-Martin A , Ferrer M , Guallar V |
| Ref : Biomolecules , 12 : , 2022 |
| Abstract : |
| PubMedSearch : Xiang_2022_Biomolecules_12_ |
| PubMedID: 36291739 |
| Title : Computationally Driven Rational Design of Substrate Promiscuity on Serine Ester Hydrolases - Roda_2021_ACS.Catal_11_3590 |
| Author(s) : Roda S , Fernandez-Lopez L , Canadas R , Santiago G , Ferrer M , Guallar V |
| Ref : ACS Catal , 11 :3590 , 2021 |
| Abstract : |
| PubMedSearch : Roda_2021_ACS.Catal_11_3590 |
| PubMedID: |
| Title : Computationally Driven Rational Design of Substrate Promiscuity on Serine Ester Hydrolases - Roda_2021_ACS.Catal_11_3590 |
| Author(s) : Roda S , Fernandez-Lopez L , Canadas R , Santiago G , Ferrer M , Guallar V |
| Ref : ACS Catal , 11 :3590 , 2021 |
| Abstract : |
| PubMedSearch : Roda_2021_ACS.Catal_11_3590 |
| PubMedID: |
| Title : Computationally Driven Rational Design of Substrate Promiscuity on Serine Ester Hydrolases - Roda_2021_ACS.Catal_11_3590 |
| Author(s) : Roda S , Fernandez-Lopez L , Canadas R , Santiago G , Ferrer M , Guallar V |
| Ref : ACS Catal , 11 :3590 , 2021 |
| Abstract : |
| PubMedSearch : Roda_2021_ACS.Catal_11_3590 |
| PubMedID: |
| Title : Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis - Alonso_2020_Nat.Catal_3_319 |
| Author(s) : Alonso S , Santiago G , Cea-Rama I , Fernandez-Lopez L , Coscolin C , Modregger J , Ressmann A , Martinez-Martinez M , Marrero H , Bargiela R , Pita M , Gonzalez-Alfonso JL , Briand M , Rojo D , Barbas C , Plou FJ , Golyshin PN , Shahgaldian P , Sanz-Aparicio J , Guallar V , Ferrer M |
| Ref : Nature Catalysis , 3 :319 , 2019 |
| Abstract : |
| PubMedSearch : Alonso_2020_Nat.Catal_3_319 |
| PubMedID: |
| Gene_locus related to this paper: 9bact-LAE6 |
| Title : Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis - Alonso_2020_Nat.Catal_3_319 |
| Author(s) : Alonso S , Santiago G , Cea-Rama I , Fernandez-Lopez L , Coscolin C , Modregger J , Ressmann A , Martinez-Martinez M , Marrero H , Bargiela R , Pita M , Gonzalez-Alfonso JL , Briand M , Rojo D , Barbas C , Plou FJ , Golyshin PN , Shahgaldian P , Sanz-Aparicio J , Guallar V , Ferrer M |
| Ref : Nature Catalysis , 3 :319 , 2019 |
| Abstract : |
| PubMedSearch : Alonso_2020_Nat.Catal_3_319 |
| PubMedID: |
| Gene_locus related to this paper: 9bact-LAE6 |
| Title : Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis - Alonso_2020_Nat.Catal_3_319 |
| Author(s) : Alonso S , Santiago G , Cea-Rama I , Fernandez-Lopez L , Coscolin C , Modregger J , Ressmann A , Martinez-Martinez M , Marrero H , Bargiela R , Pita M , Gonzalez-Alfonso JL , Briand M , Rojo D , Barbas C , Plou FJ , Golyshin PN , Shahgaldian P , Sanz-Aparicio J , Guallar V , Ferrer M |
| Ref : Nature Catalysis , 3 :319 , 2019 |
| Abstract : |
| PubMedSearch : Alonso_2020_Nat.Catal_3_319 |
| PubMedID: |
| Gene_locus related to this paper: 9bact-LAE6 |
| Title : Rational Engineering of Multiple Active Sites in an Ester Hydrolase - Santiago_2018_Biochemistry_57_2245 |
| Author(s) : Santiago G , Martinez-Martinez M , Alonso S , Bargiela R , Coscolin C , Golyshin PN , Guallar V , Ferrer M |
| Ref : Biochemistry , 57 :2245 , 2018 |
| Abstract : |
| PubMedSearch : Santiago_2018_Biochemistry_57_2245 |
| PubMedID: 29600855 |
| Gene_locus related to this paper: 9bact-LAE6 |
| Title : Rational Engineering of Multiple Active Sites in an Ester Hydrolase - Santiago_2018_Biochemistry_57_2245 |
| Author(s) : Santiago G , Martinez-Martinez M , Alonso S , Bargiela R , Coscolin C , Golyshin PN , Guallar V , Ferrer M |
| Ref : Biochemistry , 57 :2245 , 2018 |
| Abstract : |
| PubMedSearch : Santiago_2018_Biochemistry_57_2245 |
| PubMedID: 29600855 |
| Gene_locus related to this paper: 9bact-LAE6 |
| Title : Rational Engineering of Multiple Active Sites in an Ester Hydrolase - Santiago_2018_Biochemistry_57_2245 |
| Author(s) : Santiago G , Martinez-Martinez M , Alonso S , Bargiela R , Coscolin C , Golyshin PN , Guallar V , Ferrer M |
| Ref : Biochemistry , 57 :2245 , 2018 |
| Abstract : |
| PubMedSearch : Santiago_2018_Biochemistry_57_2245 |
| PubMedID: 29600855 |
| Gene_locus related to this paper: 9bact-LAE6 |
| Title : Active-Site-Directed Inhibitors of Prolyl Oligopeptidase Abolish Its Conformational Dynamics - Lopez_2016_Chembiochem_17_913 |
| Author(s) : Lopez A , Herranz-Trillo F , Kotev M , Gairi M , Guallar V , Bernado P , Millet O , Tarrago T , Giralt E |
| Ref : Chembiochem , 17 :913 , 2016 |
| Abstract : |
| PubMedSearch : Lopez_2016_Chembiochem_17_913 |
| PubMedID: 26918396 |
| Gene_locus related to this paper: human-PREP |
| Title : Active-Site-Directed Inhibitors of Prolyl Oligopeptidase Abolish Its Conformational Dynamics - Lopez_2016_Chembiochem_17_913 |
| Author(s) : Lopez A , Herranz-Trillo F , Kotev M , Gairi M , Guallar V , Bernado P , Millet O , Tarrago T , Giralt E |
| Ref : Chembiochem , 17 :913 , 2016 |
| Abstract : |
| PubMedSearch : Lopez_2016_Chembiochem_17_913 |
| PubMedID: 26918396 |
| Gene_locus related to this paper: human-PREP |
| Title : Active-Site-Directed Inhibitors of Prolyl Oligopeptidase Abolish Its Conformational Dynamics - Lopez_2016_Chembiochem_17_913 |
| Author(s) : Lopez A , Herranz-Trillo F , Kotev M , Gairi M , Guallar V , Bernado P , Millet O , Tarrago T , Giralt E |
| Ref : Chembiochem , 17 :913 , 2016 |
| Abstract : |
| PubMedSearch : Lopez_2016_Chembiochem_17_913 |
| PubMedID: 26918396 |
| Gene_locus related to this paper: human-PREP |
| Title : Unveiling prolyl oligopeptidase ligand migration by comprehensive computational techniques - Kotev_2015_Biophys.J_108_116 |
| Author(s) : Kotev M , Lecina D , Tarrago T , Giralt E , Guallar V |
| Ref : Biophysical Journal , 108 :116 , 2015 |
| Abstract : |
| PubMedSearch : Kotev_2015_Biophys.J_108_116 |
| PubMedID: 25564858 |
| Gene_locus related to this paper: human-PREP |
| Title : Unveiling prolyl oligopeptidase ligand migration by comprehensive computational techniques - Kotev_2015_Biophys.J_108_116 |
| Author(s) : Kotev M , Lecina D , Tarrago T , Giralt E , Guallar V |
| Ref : Biophysical Journal , 108 :116 , 2015 |
| Abstract : |
| PubMedSearch : Kotev_2015_Biophys.J_108_116 |
| PubMedID: 25564858 |
| Gene_locus related to this paper: human-PREP |
| Title : Unveiling prolyl oligopeptidase ligand migration by comprehensive computational techniques - Kotev_2015_Biophys.J_108_116 |
| Author(s) : Kotev M , Lecina D , Tarrago T , Giralt E , Guallar V |
| Ref : Biophysical Journal , 108 :116 , 2015 |
| Abstract : |
| PubMedSearch : Kotev_2015_Biophys.J_108_116 |
| PubMedID: 25564858 |
| Gene_locus related to this paper: human-PREP |