arath-AT2G05260

 
Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) at2g05260 protein

Relationship
Family Lipase_3
Block L
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



1 Genbank : AC007018
3 UniProt : Q9SJ35, A8MQF2, D7L8N2
3 UniProtTrembl : Q9SJ35, A8MQF2, D7L8N2
3 Interpro : Q9SJ35, A8MQF2, D7L8N2
3 Prodom : Q9SJ35, A8MQF2, D7L8N2
3 Pfam : Q9SJ35, A8MQF2, D7L8N2
3 PIRSF : Q9SJ35, A8MQF2, D7L8N2
3 SUPERFAM : Q9SJ35, A8MQF2, D7L8N2
3 QuickSwissBlast : Q9SJ35, A8MQF2, D7L8N2
1 Tair database : AT2G05260
 
Sequence
Graphical view for this peptide sequence: arath-AT2G05260
Colored MSA for Lipase_3 (raw)
MASDREEFNLCGPTHLTTVDWGNEDHQRCVAACLVQGIYIVEQDRQLKRE
GTEALASPWWESFNFKLIRHLKDDADFSIFGGIFEYKSLQPDVVDSGVPR
YVIAFRGTLTKADSITRDIELDIHIIRNGLHRTSRFEIAMQAVRSMADSV
GASSFWLTGHSLGAAMALLAGKTMGKSGVYIKSLLFNPPYVSPPIERIAN
ERVRHGIRFAGSLITAGLALSRTLKQTQQPQQQQLQLQNLTEDPLEALSS
WLPNIHVNPGDHLCSEYIGFFEHRGNMEQIGYGAGIVERMAMQHSLGGLL
MDAMGVSNAVEVEEPVHVIPSANLIVNKTISEDYKDAHGIHQWWRDDQDL
VSHIYMYK
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MASDREEFNLCGPTHLTTVDWGNEDHQRCVAACLVQGIYIVEQDRQLKRE
GTEALASPWWESFNFKLIRHLKDDADFSIFGGIFEYKSLQPDVVDSGVPR
YVIAFRGTLTKADSITRDIELDIHIIRNGLHRTSRFEIAMQAVRSMADSV
GASSFWLTGHSLGAAMALLAGKTMGKSGVYIKSLLFNPPYVSPPIERIAN
ERVRHGIRFAGSLITAGLALSRTLKQTQQPQQQQLQLQNLTEDPLEALSS
WLPNIHVNPGDHLCSEYIGFFEHRGNMEQIGYGAGIVERMAMQHSLGGLL
MDAMGVSNAVEVEEPVHVIPSANLIVNKTISEDYKDAHGIHQWWRDDQDL
VSHIYMYK

no DNA




References
    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            

    Title: Features of Arabidopsis genes and genome discovered using full-length cDNAs
    Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, Feldmann KA
    Ref: Plant Mol Biol, 60:69, 2006 : PubMed

            

    Title: Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana
    Lin X, Kaul S, Rounsley S, Shea TP, Benito MI, Town CD, Fujii CY, Mason T, Bowman CL and Venter JC <27 more author(s)>
    Ref: Nature, 402:761, 1999 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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