arath-At4g12230

 
Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Alpha/beta-Hydrolases superfamily protein At4g12230 T4C9.70

Relationship
Block X
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



>3 Genbank links 1 more: AL080318, AL161533, AY084996
1 UniProt : D7M0G1
2 UniProtTrembl : Q9STI8, D7M0G1
2 Interpro : Q9STI8, D7M0G1
2 Prodom : Q9STI8, D7M0G1
2 Pfam : Q9STI8, D7M0G1
2 PIRSF : Q9STI8, D7M0G1
2 SUPERFAM : Q9STI8, D7M0G1
2 QuickSwissBlast : Q9STI8, D7M0G1
1 Tair database : At4g12230
 
Sequence
Graphical view for this peptide sequence: arath-At4g12230
Colored MSA for Maspardin-ACP33-SPG21_like (raw)
MKGVSSTPGDYVYFKSQVPLHKIPIGTKQWRYYDFGPKTVPPLICIPGIA
GTADVYYKQIMALSMKGYRVISVDIPRVWNYHEWIQAFEKFLDTIDVHHV
HLYGTSLGGFLAQLFAHHRPRRVKSLVLSNTYLDTRTFATAMPWAPFVSW
TPSFLLKRYVLTGIRDGPHEPFIADSVDFAVSQVETLSKDDLASRLTLTV
DAASVGSLLLSDSSVTIMDTNDYCAIPQHLKDELTERYPEARRAYLKSGG
DFPFLSRPDEVNLHLQLHLRRVGVEPRPEVVKSIPKGGADGTDGSSQSKK
KSDEEKDDRNNNMPQDSGSSSSDQSPTFPESSGSSNDPPLPTDTIQLLSS
SLNNLILVQLAGEVYQSCVVFTLCYCTLVLVHGGGFISRQLV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MKGVSSTPGDYVYFKSQVPLHKIPIGTKQWRYYDFGPKTVPPLICIPGIA
GTADVYYKQIMALSMKGYRVISVDIPRVWNYHEWIQAFEKFLDTIDVHHV
HLYGTSLGGFLAQLFAHHRPRRVKSLVLSNTYLDTRTFATAMPWAPFVSW
TPSFLLKRYVLTGIRDGPHEPFIADSVDFAVSQVETLSKDDLASRLTLTV
DAASVGSLLLSDSSVTIMDTNDYCAIPQHLKDELTERYPEARRAYLKSGG
DFPFLSRPDEVNLHLQLHLRRVGVEPRPEVVKSIPKGGADGTDGSSQSKK
KSDEEKDDRNNNMPQDSGSSSSDQSPTFPESSGSSNDPPLPTDTIQLLSS
SLNNLILVQLAGEVYQSCVVFTLCYCTLVLVHGGGFISRQLV

no DNA




References
    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            

    Title: Full-length messenger RNA sequences greatly improve genome annotation
    Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL
    Ref: Genome Biol, 3:RESEARCH0029, 2002 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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