Gene_Locus Report
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Gene_locus Report for: arath-SCP4

Arabidopsis thaliana (Mouse-ear cress), T18K17_2 T9L24.47 At1g73310 SCP4 putative serine carboxypeptidase

Relationship
Family|Carboxypeptidase_S10
Block| X
Position in NCBI Life Tree|Arabidopsis thaliana
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AC010556, AC012396
2 UniProt : Q9CAU4, Q9FX26
2 Ncbi-nid : 12324309, 11120784
2 Ncbi-pid : 12324317, 11120810
2 UniProt : Q9CAU4, Q9FX26
2 Interpro : Q9CAU4, Q9FX26
2 Pfam : Q9CAU4, Q9FX26
2 PIRSF : Q9CAU4, Q9FX26
2 SUPERFAM : Q9CAU4, Q9FX26
1 Tair database : At1g73310
Sequence
Peptide
Graphical view for this peptide sequence: arath-SCP4
Colored MSA for Carboxypeptidase_S10 (raw) 
MANNNVYSVLKSLLLLLHLVFLSKQHVDSASIVKFLPGFEGPLPFELETG
YIGVGEEEEVQLFYYFIKSERNPKEDPLLLWLTGGPGCSAISGLLYQNGP
LAMKLDVYNGTLPSLVSTTYSWTKTSSMIFLDQPVGTGFSYSRTQLFNKP
SDTGEAKRIHEFLQKWLGKHQEFSSNPFYVGGDSYSGLVVPATVQEISKG
NCQCCNRPINLQGYVLGNPLTDCVYDCNYRVPFAHKMALISDELYESLKR
TCRGEYVNVHPHDTECLKFVEEFNKLTNRVCERHILHSCCETETPSCYSY
RFMLTTYWANDETVRKALQINKESIGEWTRCYRGIPYNHDIKSSVPYHMN
NSIDGYRSLIYSGDHDIQVPFLGTQAWIRSLNYSIIDDWRPWMIKDQIAG
YTTSYVNKMTFATVTGGGHTAEFTPKETFMMFQRWINGQPL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
MANNNVYSVLKSLLLLLHLVFLSKQHVDSASIVKFLPGFEGPLPFELETG
YIGVGEEEEVQLFYYFIKSERNPKEDPLLLWLTGGPGCSAISGLLYQNGP
LAMKLDVYNGTLPSLVSTTYSWTKTSSMIFLDQPVGTGFSYSRTQLFNKP
SDTGEAKRIHEFLQKWLGKHQEFSSNPFYVGGDSYSGLVVPATVQEISKG
NCQCCNRPINLQGYVLGNPLTDCVYDCNYRVPFAHKMALISDELYESLKR
TCRGEYVNVHPHDTECLKFVEEFNKLTNRVCERHILHSCCETETPSCYSY
RFMLTTYWANDETVRKALQINKESIGEWTRCYRGIPYNHDIKSSVPYHMN
NSIDGYRSLIYSGDHDIQVPFLGTQAWIRSLNYSIIDDWRPWMIKDQIAG
YTTSYVNKMTFATVTGGGHTAEFTPKETFMMFQRWINGQPL

References
    Title: An expression and bioinformatics analysis of the Arabidopsis serine carboxypeptidase-like gene family
    Fraser CM, Rider LW, Chapple C
    Ref: Plant Physiol, 138:1136, 2005 : PubMed

            

    Title: Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
    Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R and Davis RW <79 more author(s)>
    Ref: Nature, 408:816, 2000 : PubMed

            


Other Papers

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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