Gene_Locus Report

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Gene_locus Report for: arath-SCPL6

Arabidopsis thaliana (Mouse-ear cress) T18K17.6, SCPL6, At1g73270, Serine carboxypeptidase-like 6

Relationship
Family|Carboxypeptidase_S10
Block| X
Position in NCBI Life Tree|Arabidopsis thaliana
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : AC010556
1 UniProt : Q9CAU0
1 Ncbi-nid : 12324309
1 Ncbi-pid : 12324330
1 UniProt : Q9CAU0
1 Interpro : Q9CAU0
1 Prodom : Q9CAU0
1 Pfam : Q9CAU0
1 PIRSF : Q9CAU0
1 SUPERFAM : Q9CAU0
1 Tair database : At1g73270
Sequence
Graphical view for this peptide sequence: arath-SCPL6
Colored MSA for Carboxypeptidase_S10 (raw)
MANDYISFVFKSLLLLIHLVFLGQHHVDSASVVKSLPGFEGPLPFELETG
YIGVGEEEEVQLFYYFIKSERNPKEDPLLLWLTGGPGCSAISGLLYENGP
LTMKLDVYNGTLPSLVSTTYSWTKNSSMIFLDQPVGTGFSYSRTELFNKP
SDTGEAKRIHEFLQKWLGKHQEFSSNPFYVGGDSYSGITVPATVQEISKG
NYQCCKPPINLQGYMLGNPITDSKIDGNSQIPYAHGMALISDELYESLKR
ICKGEYEHVDPYNTECLKLLEEFNECTSKLYRSHILYPLCEMTNPDCYIY
RYSLSHYWVNDETVRKALQINKESIREWKRCDWSKPYTKDIISSVPYHMN
NSINGYRSLIFSGDHDFEVPLIGTQVWIKSLNYAIVDKWRPWMINNQVAG
YTRTYANKMTFATVKGGGHTAEYKPDETFIMFQRWINGQAL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MANDYISFVFKSLLLLIHLVFLGQHHVDSASVVKSLPGFEGPLPFELETG
YIGVGEEEEVQLFYYFIKSERNPKEDPLLLWLTGGPGCSAISGLLYENGP
LTMKLDVYNGTLPSLVSTTYSWTKNSSMIFLDQPVGTGFSYSRTELFNKP
SDTGEAKRIHEFLQKWLGKHQEFSSNPFYVGGDSYSGITVPATVQEISKG
NYQCCKPPINLQGYMLGNPITDSKIDGNSQIPYAHGMALISDELYESLKR
ICKGEYEHVDPYNTECLKLLEEFNECTSKLYRSHILYPLCEMTNPDCYIY
RYSLSHYWVNDETVRKALQINKESIREWKRCDWSKPYTKDIISSVPYHMN
NSINGYRSLIFSGDHDFEVPLIGTQVWIKSLNYAIVDKWRPWMINNQVAG
YTRTYANKMTFATVKGGGHTAEYKPDETFIMFQRWINGQAL


References
    Title: An expression and bioinformatics analysis of the Arabidopsis serine carboxypeptidase-like gene family
    Fraser CM, Rider LW, Chapple C
    Ref: Plant Physiol, 138:1136, 2005 : PubMed

            

    Title: Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
    Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R and Davis RW <79 more author(s)>
    Ref: Nature, 408:816, 2000 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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