Gene_Locus Report

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Gene_locus Report for: cioin-H2XTI0

Ciona intestinalis (Transparent sea squirt) (Ascidia intestinalis) similar to putative cholinesterase

Comment
a tandem duplication the 2 genes may not be functional


Relationship
Family|Cholinesterase-like
Block| C
Position in NCBI Life Tree|Ciona intestinalis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Tunicata: N E > Ascidiacea: N E > Enterogona: N E > Phlebobranchia: N E > Cionidae: N E > Ciona: N E > Ciona intestinalis: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : XM_002122508, EAAA01002642
1 UniProt : H2XTI0
1 Ncbi-nid : 198433862
1 Ncbi-pid : 198433863
1 UniProt : H2XTI0
1 Interpro : H2XTI0
1 Prodom : H2XTI0
1 Pfam : H2XTI0
1 PIRSF : H2XTI0
1 SUPERFAM : H2XTI0
Sequence
Graphical view for this peptide sequence: cioin-H2XTI0
Colored MSA for Cholinesterase-like (raw)
MKPVISFAAVLMIKLSFYRAFAVIPVVNRQPTGTLVNTTSGLLNGTSTAE
AHAFYAVPFAQPPIGSLRFRSPLPVPYLGLIDASEYKLVQCPQINRGNYT
EDCLVLNVFVPSTLNLDTAIAPEDGLPVMVWIHGGAFMTGSSTILFYHGE
PLCNRTNTVIVTVNYRLGAFGFLSLNEGDVVLEGNQGIRDQQLALTWVKD
NIANFGGDKNKVTIFGESAGAQSVVLHLVSPTSESLFHRAIIQSSPAYYQ
FYTNTEANELTREKDVDDIVAAYPAVVNFVGQRKYGVGATETFRPYIDEV
LIPDQPLKLLETGNWNKKAIIIGSNTEEGQSESFQQFHDFELFKATTTYF
FGPILAPSLIREYSKLVANVSDDYDYIKLIEDMTGDGLFVCPTRTLARLA
YETTNIPNSVFLYSNAYPPNASTHAVEIPYVFRTVFNETADDNIIMNMFS
DYWGSFAHNEVPQSNTFATWPAYASTADELLRIKVPNTTVLTGFKNNICD
FWDSLGIYINLTTDATVEMTTSNDIG
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MKPVISFAAVLMIKLSFYRAFAVIPVVNRQPTGTLVNTTSGLLNGTSTAE
AHAFYAVPFAQPPIGSLRFRSPLPVPYLGLIDASEYKLVQCPQINRGNYT
EDCLVLNVFVPSTLNLDTAIAPEDGLPVMVWIHGGAFMTGSSTILFYHGE
PLCNRTNTVIVTVNYRLGAFGFLSLNEGDVVLEGNQGIRDQQLALTWVKD
NIANFGGDKNKVTIFGESAGAQSVVLHLVSPTSESLFHRAIIQSSPAYYQ
FYTNTEANELTREKDVDDIVAAYPAVVNFVGQRKYGVGATETFRPYIDEV
LIPDQPLKLLETGNWNKKAIIIGSNTEEGQSESFQQFHDFELFKATTTYF
FGPILAPSLIREYSKLVANVSDDYDYIKLIEDMTGDGLFVCPTRTLARLA
YETTNIPNSVFLYSNAYPPNASTHAVEIPYVFRTVFNETADDNIIMNMFS
DYWGSFAHNEVPQSNTFATWPAYASTADELLRIKVPNTTVLTGFKNNICD
FWDSLGIYINLTTDATVEMTTSNDIG


Reference
    Title: The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins
    Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M and Rokhsar DS <77 more author(s)>
    Ref: Science, 298:2157, 2002 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
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