Gene_Locus Report

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Gene_locus Report for: cioin-cxest

Ciona intestinalis cDNA, clone:cicl047k12 gene ci0100143569

Comment
ci0100143569 is on scaffold_38(400Kb) there is another short scaffold of 3.6kb containing at one end a little of the same sequence Scaffold_2439 the gene is partial ci0100148102. Differences between XM_002123632 and F6UTQ2


Relationship
Family|Carb_B_Chordata
Block| C
Position in NCBI Life Tree|Ciona intestinalis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Tunicata: N E > Ascidiacea: N E > Enterogona: N E > Phlebobranchia: N E > Cionidae: N E > Ciona: N E > Ciona intestinalis: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : AK116762, XM_002123632, EAAA01000580
3 UniProt : F6UTQ2, F6UTN2, H2XK96
2 Ncbi-nid : 23589430, 198433237
1 Ncbi-pid : 198433238
3 UniProt : F6UTQ2, F6UTN2, H2XK96
3 Interpro : F6UTQ2, F6UTN2, H2XK96
3 Pfam : F6UTQ2, F6UTN2, H2XK96
3 PIRSF : F6UTQ2, F6UTN2, H2XK96
3 SUPERFAM : F6UTQ2, F6UTN2, H2XK96
2 JGI CIONA gene : 143569, 148102
Sequence
Graphical view for this peptide sequence: cioin-cxest
Colored MSA for Carb_B_Chordata (raw)
MAHSTFVLLCIFILSTLFSNVVDATEELNVKTLYGWVEGTTRRALESNRD
VYSFFGIPYARSPDYTFRFRPPVDPWVWEGVKDTTNQNVPFCSQDPVLLK
NLRQDTWFSYVIDANNTMKEDCLTVNVFSPTKPSKVQQTKKLPVLVWIHG
GGLSFTATTNKLWMLPAFEDVVVVTIQYRLGVFGFLTLEDNWAPGNTGLL
DQVKALEWVRDNIQAFGGDPEKVTIFGQSSGGFSVSAHMLSPRSRGLFHR
AFAMSGVAILPYNDPEFSKKNPAADALKLAEKLGCKFWDNAHTSTCLRNH
VTTSEMLAATKSLQMRFGTNIDVDFFPDFPRLTANAFNKSIPLMLGVVSG
EMDFILGEKMIPNYNKVSSHTPKSAESLIRNDLAKYHPQLKNPDRIVREY
LTNIKPGIDTVKAESDYLTDSWYTSKLVTVANAHKGAGGNVYMYEFTKQP
SLNQGLKPRLVDFKRADHCDDMIFFQGIPFLPGLKERGLTFTQGEKDLSR
KLMNLLANFARNGSPNSIGSFSWPQYPEYVLINDTMSVHSGFREQKVKLF
FEN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MAHSTFVLLCIFILSTLFSNVVDATEELNVKTLYGWVEGTTRRALESNRD
VYSFFGIPYARSPDYTFRFRPPVDPWVWEGVKDTTNQNVPFCSQDPVLLK
NLRQDTWFSYVIDANNTMKEDCLTVNVFSPTKPSKVQQTKKLPVLVWIHG
GGLSFTATTNKLWMLPAFEDVVVVTIQYRLGVFGFLTLEDNWAPGNTGLL
DQVKALEWVRDNIQAFGGDPEKVTIFGQSSGGFSVSAHMLSPRSRGLFHR
AFAMSGVAILPYNDPEFSKKNPAADALKLAEKLGCKFWDNAHTSTCLRNH
VTTSEMLAATKSLQMRFGTNIDVDFFPDFPRLTANAFNKSIPLMLGVVSG
EMDFILGEKMIPNYNKVSSHTPKSAESLIRNDLAKYHPQLKNPDRIVREY
LTNIKPGIDTVKAESDYLTDSWYTSKLVTVANAHKGAGGNVYMYEFTKQP
SLNQGLKPRLVDFKRADHCDDMIFFQGIPFLPGLKERGLTFTQGEKDLSR
KLMNLLANFARNGSPNSIGSFSWPQYPEYVLINDTMSVHSGFREQKVKLF
FEN


References
    Title: The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins
    Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M and Rokhsar DS <77 more author(s)>
    Ref: Science, 298:2157, 2002 : PubMed

            

    Title: A cDNA resource from the basal chordate Ciona intestinalis
    Satou Y, Yamada L, Mochizuki Y, Takatori N, Kawashima T, Sasaki A, Hamaguchi M, Awazu S, Yagi K and Satoh N <4 more author(s)>
    Ref: Genesis, 33:153, 2002 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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