Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: cioin-f6u176

Ciona intestinalis (Transparent sea squirt) (Ascidia intestinalis) Uncharacterized protein

Relationship
Family|Valacyclovir-hydrolase
Block| X
Position in NCBI Life Tree|Ciona intestinalis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Tunicata: N E > Ascidiacea: N E > Enterogona: N E > Phlebobranchia: N E > Cionidae: N E > Ciona: N E > Ciona intestinalis: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : EAAA01002843
1 UniProt : F6U176
1 UniProt : F6U176
1 Interpro : F6U176
1 Prodom : F6U176
1 Pfam : F6U176
1 PIRSF : F6U176
1 SUPERFAM : F6U176
Sequence
Graphical view for this peptide sequence: cioin-f6u176
Colored MSA for Valacyclovir-hydrolase (raw)
MSKIFVNGVELFYQKFGTGEHVVLLLCGGLGFGNIHYKPQIEGFDLEKFT
LISWDPRGYGQSRPPKRVFPKDFYYIDADDAIALMEKLGYESYSLLGWSD
GAILAAIIGANKSEKVRKIVKWGGNAFCTPDMMVVYQGLHDGSIWSEDAF
GPLLKYYGKEYFDCILKAWCASFKTMDKDSEGNVNICSEYLSDVKAPTLI
IHGMKDGLVVKMHADFFLEKIKDSKLVVFDEGDHHLHLQFPEKFNRLAQE
FLLE
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSKIFVNGVELFYQKFGTGEHVVLLLCGGLGFGNIHYKPQIEGFDLEKFT
LISWDPRGYGQSRPPKRVFPKDFYYIDADDAIALMEKLGYESYSLLGWSD
GAILAAIIGANKSEKVRKIVKWGGNAFCTPDMMVVYQGLHDGSIWSEDAF
GPLLKYYGKEYFDCILKAWCASFKTMDKDSEGNVNICSEYLSDVKAPTLI
IHGMKDGLVVKMHADFFLEKIKDSKLVVFDEGDHHLHLQFPEKFNRLAQE
FLLE


Reference
    Title: The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins
    Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M and Rokhsar DS <77 more author(s)>
    Ref: Science, 298:2157, 2002 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer