Gene_Locus Report

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Gene_locus Report for: cioin-h2xqb4

Ciona intestinalis similar to neuroligin 1

Comment
F6SYL8 only fragment


Relationship
Family|Neuroligin
Block| C
Position in NCBI Life Tree|Ciona intestinalis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Tunicata: N E > Ascidiacea: N E > Enterogona: N E > Phlebobranchia: N E > Cionidae: N E > Ciona: N E > Ciona intestinalis: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : XM_002123995, EAAA01002369
1 UniProt : H2XQB4
1 Ncbi-nid : 198436874
1 Ncbi-pid : 198436875
1 UniProt : H2XQB4
1 Interpro : H2XQB4
1 Prodom : H2XQB4
1 Pfam : H2XQB4
1 PIRSF : H2XQB4
1 SUPERFAM : H2XQB4
Sequence
Graphical view for this peptide sequence: cioin-h2xqb4
Colored MSA for Neuroligin (raw)
MHQQLVLFILLLDAVVQLNSSPSRNQARKLFRSSKKTRRDAPSRPSGFLR
SLIYSDEDLDASIRDITSILIRTNSGNIKGFKKVLDNNSIKPVIQFLGIP
YAAPPIGKLRWQRTEKAKPWNGVRNASEFGPICPQPRSGPLPSVLLPIWY
KANNSLVRKMRMDEDCLYLNIYVPAKLYATGTNDIYPTVLFIEQNYPRNH
YKNPLKVMVYFHGYTYAEGSGNFYDGSVLASYGDVIVVTFNYRLGVLGFM
STMEANSPGNYGLWDQIAAVKWVSENIEKFGGDPSAVTVFGSGAGASCIG
LLMLSVQLDEYFHRAIFQSGTPLAPWSMVRNPRQQTRALARDYNINCDRE
STTEMVRCLKHKHWRDLINVEIMTDPYDLVYGPVVDGQDKFLMENPFNLM
EKGEFVNYQIMMGVSQADGFGYIRAFMSPISDRMKTNFDVVVAKFTDSFY
EDSKVPLEAIEKLVRFIYTDWSDKSNPTRVKESLMDLYTDRQYVEPAVRA
ALHYINYKSNAFFYTFYHHPGKDKTRPWVQSALGEQDPFVFGAPLLGNSE
DTLFPYNYTKDDIMISTAVMTYWTNFAKNGDPGIGKKQQTQFITGKANSF
EKIVWPEYTIDTRQHLKICTTPEVSDHYRAQKVELWRSFLPSLSGVSNDE
SYKGGRVKPLLPPRAKPPTISPGTKTPTWQPIKNYSQRSQQQSTPKTDTS
GLSLQLSITLAVGFVLLFLNIIAFAVVSYHKEK
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MHQQLVLFILLLDAVVQLNSSPSRNQARKLFRSSKKTRRDAPSRPSGFLR
SLIYSDEDLDASIRDITSILIRTNSGNIKGFKKVLDNNSIKPVIQFLGIP
YAAPPIGKLRWQRTEKAKPWNGVRNASEFGPICPQPRSGPLPSVLLPIWY
KANNSLVRKMRMDEDCLYLNIYVPAKLYATGTNDIYPTVLFIEQNYPRNH
YKNPLKVMVYFHGYTYAEGSGNFYDGSVLASYGDVIVVTFNYRLGVLGFM
STMEANSPGNYGLWDQIAAVKWVSENIEKFGGDPSAVTVFGSGAGASCIG
LLMLSVQLDEYFHRAIFQSGTPLAPWSMVRNPRQQTRALARDYNINCDRE
STTEMVRCLKHKHWRDLINVEIMTDPYDLVYGPVVDGQDKFLMENPFNLM
EKGEFVNYQIMMGVSQADGFGYIRAFMSPISDRMKTNFDVVVAKFTDSFY
EDSKVPLEAIEKLVRFIYTDWSDKSNPTRVKESLMDLYTDRQYVEPAVRA
ALHYINYKSNAFFYTFYHHPGKDKTRPWVQSALGEQDPFVFGAPLLGNSE
DTLFPYNYTKDDIMISTAVMTYWTNFAKNGDPGIGKKQQTQFITGKANSF
EKIVWPEYTIDTRQHLKICTTPEVSDHYRAQKVELWRSFLPSLSGVSNDE
SYKGGRVKPLLPPRAKPPTISPGTKTPTWQPIKNYSQRSQQQSTPKTDTS
GLSLQLSITLAVGFVLLFLNIIAFAVVSYHKEK


Reference
    Title: The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins
    Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M and Rokhsar DS <77 more author(s)>
    Ref: Science, 298:2157, 2002 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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