Gene_Locus Report

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Gene_locus Report for: orysa-Q8GTK2

Oryza sativa subsp. japonica subsp. indica (Rice) putative serine carboxypeptidase II-3 precursor

Comment
Oryza sativa subsp. japonica subsp. indica (Rice) Oryza glaberrima (African rice)


Relationship
Family|Carboxypeptidase_S10
Block| X
Position in NCBI Life Tree|Oryza sativa
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AP005184, AY224473
>3 UniProt links 3 more: Q8GTK2, Q84P92, B9FUM7
>3 UniProt links 3 more: Q8GTK2, Q84P92, B9FUM7
>3 Interpro links 3 more: Q8GTK2, Q84P92, B9FUM7
>3 Pfam links 3 more: Q8GTK2, Q84P92, B9FUM7
>3 PIRSF links 3 more: Q8GTK2, Q84P92, B9FUM7
>3 SUPERFAM links 3 more: Q8GTK2, Q84P92, B9FUM7
Sequence
Graphical view for this peptide sequence: orysa-Q8GTK2
Colored MSA for Carboxypeptidase_S10 (raw)
MRTSTSNAALLLLVAAAQCLALLSVAAAAKPRTRQGDYLDRLRGSPSSWA
SLAEDRGAPAPSPSPSGGRHAAPAAAAVGSKEADRVAGLPGQPAGVGFAQ
YAGYVTVDAAAGRALFYYLAEADGGAAASSKAPLLLWLNGGPGCSSLGYG
AMEELGPFRVKSDGVSLYRNPYSWNNVANVMFLESPIGVGFSYSNTTADY
SRMGDNSTAEDAYKFLVNWMERFPEYKGRDFYLAGESYAGHYVPQLAHAI
LRHSSAAAGGKPSSSPINLKGIMIGNAVINDWTDTKGMYDFFWTHALISD
EANDGITKHCNFTDGADANSLCDDATSLADDCLQDIDIYNIYAPNCQSPG
LVVSPPVTPSIESFDPCTDYYVEAYLNNPDVQKALHANITRLDHPWSACS
GVLRRWVDSASTVLPIIKELLKNNIRVWVYSGDTDGRVPVTSSRYSVNQL
NLPVAAKWRPWFSNTQGVGDVGGYIVQYKGNLSLVTVRGAGHEVPSYQPQ
RALVLVQYFLEGKTLPDCEKCGEA
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MRTSTSNAALLLLVAAAQCLALLSVAAAAKPRTRQGDYLDRLRGSPSSWA
SLAEDRGAPAPSPSPSGGRHAAPAAAAVGSKEADRVAGLPGQPAGVGFAQ
YAGYVTVDAAAGRALFYYLAEADGGAAASSKAPLLLWLNGGPGCSSLGYG
AMEELGPFRVKSDGVSLYRNPYSWNNVANVMFLESPIGVGFSYSNTTADY
SRMGDNSTAEDAYKFLVNWMERFPEYKGRDFYLAGESYAGHYVPQLAHAI
LRHSSAAAGGKPSSSPINLKGIMIGNAVINDWTDTKGMYDFFWTHALISD
EANDGITKHCNFTDGADANSLCDDATSLADDCLQDIDIYNIYAPNCQSPG
LVVSPPVTPSIESFDPCTDYYVEAYLNNPDVQKALHANITRLDHPWSACS
GVLRRWVDSASTVLPIIKELLKNNIRVWVYSGDTDGRVPVTSSRYSVNQL
NLPVAAKWRPWFSNTQGVGDVGGYIVQYKGNLSLVTVRGAGHEVPSYQPQ
RALVLVQYFLEGKTLPDCEKCGEA


References
    Title: The map-based sequence of the rice genome.
    Matsumo T, Sasaki T
    Ref: Nature, 436:793, 2005 : PubMed

            

    Title: The Genomes of Oryza sativa: a history of duplications
    Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S and Yang H <88 more author(s)>
    Ref: PLoS Biol, 3:e38, 2005 : PubMed

            

    Title: A network of rice genes associated with stress response and seed development
    Cooper B, Clarke JD, Budworth P, Kreps J, Hutchison D, Park S, Guimil S, Dunn M, Luginbuhl P and Glazebrook J <2 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 100:4945, 2003 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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