Gene_Locus Report

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Gene_locus Report for: orysa-q2rbb3

Oryza sativa (japonica cultivar-group) subsp. japonica subsp. indica alpha-hydroxynitrile lyase, putative. os12g0117200

Comment
two paralogues in 2 strains


Relationship
Family|Hydroxynitrile_lyase
Block| X
Position in NCBI Life Tree|Oryza sativa
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 3 more: DP000010, AP008218, CM000148
>3 UniProt links 3 more: Q2RBB3, Q0IQJ8, B9G929
>3 UniProt links 3 more: Q2RBB3, Q0IQJ8, B9G929
>3 Interpro links 3 more: Q2RBB3, Q0IQJ8, B9G929
>3 Pfam links 3 more: Q2RBB3, Q0IQJ8, B9G929
>3 PIRSF links 3 more: Q2RBB3, Q0IQJ8, B9G929
>3 SUPERFAM links 3 more: Q2RBB3, Q0IQJ8, B9G929
Sequence
Graphical view for this peptide sequence: orysa-q2rbb3
Colored MSA for Hydroxynitrile_lyase (raw)
MSMAREHFVLIHGEGHGSWCWFKLRWLLESSGYQVTCIDLAGAGVDPTDP
NTVQSFEQYDKPLLDLISAIPEDEKVILVGHGSGGLSLIHAMHQFVDRIR
QAIFVAATMLPFGLQTDEDKKDGLPTLPENEINLIFGTGADDPPTTAALR
PEFQRERLSQQSPEEESVLASMLMRPWPVTAISTASFEGDDERLNRIKRV
FIKTERDHMLDPQQQDSMIKKWPPSEVLEIDTDHSPFFSAPEQLFNLIVK
SL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSMAREHFVLIHGEGHGSWCWFKLRWLLESSGYQVTCIDLAGAGVDPTDP
NTVQSFEQYDKPLLDLISAIPEDEKVILVGHGSGGLSLIHAMHQFVDRIR
QAIFVAATMLPFGLQTDEDKKDGLPTLPENEINLIFGTGADDPPTTAALR
PEFQRERLSQQSPEEESVLASMLMRPWPVTAISTASFEGDDERLNRIKRV
FIKTERDHMLDPQQQDSMIKKWPPSEVLEIDTDHSPFFSAPEQLFNLIVK
SL


References
    Title: The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information
    Ohyanagi H, Tanaka T, Sakai H, Shigemoto Y, Yamaguchi K, Habara T, Fujii Y, Antonio BA, Nagamura Y and Sasaki T <4 more author(s)>
    Ref: Nucleic Acids Research, 34:D741, 2006 : PubMed

            

    Title: The Genomes of Oryza sativa: a history of duplications
    Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S and Yang H <88 more author(s)>
    Ref: PLoS Biol, 3:e38, 2005 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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