Gene_Locus Report

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Gene_locus Report for: psepu-PP4916

Pseudomonas putida, Pseudomonas sp.; Pseudomonas taiwanensis; Pseudomonas sp., Pseudomonas monteilii, conserved hypothetical protein

Comment
Other strains: Pseudomonas putida (strains: KT2440; BIRD-1; GB-1; F1 / ATCC 700007; HB3267; S16; S11), Pseudomonas sp. (TJI-51; FGI182); Pseudomonas taiwanensis SJ9; Pseudomonas monteilii (SB3078; SB3101)


Relationship
Family|abh_upf00227
Block| X
Position in NCBI Life Tree|Pseudomonas putida
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Pseudomonadales: N E > Pseudomonadaceae: N E > Pseudomonas: N E > Pseudomonas putida group: N E > Pseudomonas putida: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Graphical view for this peptide sequence: psepu-PP4916
Colored MSA for abh_upf00227 (raw)
MSRPRQPAGNVLRNPWHCVKTRRTRYTARPCARITRREATDSGGSMSGSI
LYIHGFNSSPLSTKARQLEAVMQQLGLADQLRVPALHHHPRQAMVQLEAA
IAELGAPLLVGSSLGGYYATHLAERHGLKALLVNPAVTPHKHFDGYLGTQ
RNHYSGETWELTHDHVQALAELEVAAPADADRYQVWLQTADETLDYRHAE
RYYRACALRIQAGGDHSFQGFAERLPALLAFAGIARGQYAALDFSVF
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSRPRQPAGNVLRNPWHCVKTRRTRYTARPCARITRREATDSGGSMSGSI
LYIHGFNSSPLSTKARQLEAVMQQLGLADQLRVPALHHHPRQAMVQLEAA
IAELGAPLLVGSSLGGYYATHLAERHGLKALLVNPAVTPHKHFDGYLGTQ
RNHYSGETWELTHDHVQALAELEVAAPADADRYQVWLQTADETLDYRHAE
RYYRACALRIQAGGDHSFQGFAERLPALLAFAGIARGQYAALDFSVF


References
3 more
    Title: Complete Genome Sequences of Pseudomonas monteilii SB3078 and SB3101, Two Benzene-, Toluene-, and Ethylbenzene-Degrading Bacteria Used for Bioaugmentation
    Dueholm MS, Albertsen M, D'Imperio S, Tale VP, Lewis D, Nielsen PH, Nielsen JL
    Ref: Genome Announc, 2:, 2014 : PubMed

            

    Title: Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1
    Matilla MA, Pizarro-Tobias P, Roca A, Fernandez M, Duque E, Molina L, Wu X, van der Lelie D, Gomez MJ and Ramos JL <1 more author(s)>
    Ref: Journal of Bacteriology, 193:1290, 2011 : PubMed

            

    Title: Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
    Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VA, Fouts DE, Gill SR, Pop M and Fraser CM <33 more author(s)>
    Ref: Environ Microbiol, 4:799, 2002 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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