arath-AT4G25770

 
Arabidopsis thaliana (Mouse-ear cress), Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) AT4G25770/F14M19.50 hypothetical protein

Relationship
Family Duf_676
Block X
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



3 Genbank : AK118980, AL049480, AL161564
>3 UniProt links 1 more: Q8GWA3, Q9SW06, D7MFX2
>3 UniProtTrembl links 1 more: Q8GWA3, Q9SW06, D7MFX2
>3 Interpro links 1 more: Q8GWA3, Q9SW06, D7MFX2
>3 Prodom links 1 more: Q8GWA3, Q9SW06, D7MFX2
>3 Pfam links 1 more: Q8GWA3, Q9SW06, D7MFX2
>3 PIRSF links 1 more: Q8GWA3, Q9SW06, D7MFX2
>3 SUPERFAM links 1 more: Q8GWA3, Q9SW06, D7MFX2
>3 QuickSwissBlast links 1 more: Q8GWA3, Q9SW06, D7MFX2
1 Tair database : AT4G25770
 
Sequence
Graphical view for this peptide sequence: arath-AT4G25770
Colored MSA for Duf_676 (raw)
MIASFSRFQISIPDLIPSSPRFLPPSQNQFRFRLYLQFPAQPKNLCQMEW
MNRLGIGCFAANRSKRELTTEIDNGGEDFFDADVMESAEKPDHLVVMVNG
IVGSAADWKYAAEQFVKKFPDKVLVHRSESNSATLTFGGVDKMGERLANE
VLGVVKHRSGVKKISFVAHSLGGLVARYAIGKLYEQPGEVDSLDSPSKEK
SARGGEIAGLEPMNFITFATPHLGSRGHRQFPILCGLPFLERTASQTAHL
AAGRTGKHLFLVDNDDGNAPLLIRMATDSDDLKFISALNAFKRRVAYANV
NFDSMVGWRTSSIRRPNELPKPNLLATDPNYPHIVYVERGNVDNGSCQST
STVVTEQGTDLEEEMIHGLSQLSWERVDVSFHNSKQRYVAHSTIQVKTYW
LHSDGKDVVFHMMDHFGL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MIASFSRFQISIPDLIPSSPRFLPPSQNQFRFRLYLQFPAQPKNLCQMEW
MNRLGIGCFAANRSKRELTTEIDNGGEDFFDADVMESAEKPDHLVVMVNG
IVGSAADWKYAAEQFVKKFPDKVLVHRSESNSATLTFGGVDKMGERLANE
VLGVVKHRSGVKKISFVAHSLGGLVARYAIGKLYEQPGEVDSLDSPSKEK
SARGGEIAGLEPMNFITFATPHLGSRGHRQFPILCGLPFLERTASQTAHL
AAGRTGKHLFLVDNDDGNAPLLIRMATDSDDLKFISALNAFKRRVAYANV
NFDSMVGWRTSSIRRPNELPKPNLLATDPNYPHIVYVERGNVDNGSCQST
STVVTEQGTDLEEEMIHGLSQLSWERVDVSFHNSKQRYVAHSTIQVKTYW
LHSDGKDVVFHMMDHFGL

no DNA




References
    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            

    Title: Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana.
    Bevan M, Bancroft I, Bent E, Love K, Goodman H, Dean C, Bergkamp R, Dirkse W, van Staveren M and Chalwatzis N <58 more author(s)>
    Ref: Nature, 391:485, 1998 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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