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arath-AT5G20060

Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) putative lysophospholipase (hypothetical protein)

Comment

Burger et al.<\/A> show that Acyl-protein thioesterase structures present a long tunnel for accommodation of long-chain fatty acids and release the product by use of a flexible loop tunnel lid. Homologous deacetylases use a hydrophobic residue to fix the lid and another residue to close the tunnel entrance. This causes loop rigidity changing the catalytic preference to deacetylation. ZmB6T1C9 as its paralogue in Arabidopsis At5G20060 is an acylprotein thioesterase and not an protein deacetylase

Relationship

Family : LYsophospholipase_carboxylesterase

Block : X

Position in NCBI Life Tree : Arabidopsis thaliana

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)

> cellular organisms N E > Eukaryota N E > Viridiplantae N E > Streptophyta N E > Streptophytina N E > Embryophyta N E > Tracheophyta N E > Euphyllophyta N E > Spermatophyta N E > Magnoliophyta N E > Mesangiospermae N E > eudicotyledons N E > Gunneridae N E > Pentapetalae N E > rosids N E > malvids N E > Brassicales N E > Brassicaceae N E > Camelineae N E > Arabidopsis N E > Arabidopsis thaliana N E

Molecular evidence

No mutation

No structure

No kinetic

No disease

No substrate

No inhibitor

Database

Sequence

Peptide

MSISGAAVGS GRNLRRAVEF GKTHVVRPKG KHQATIVWLH GLGDNGSSWS QLLETLPLPN IKWICPTAPS QPISLFGGFP STAWFDVVDI NEDGPDDMEG LDVAAAHVAN LLSNEPADIK LGVGGFSMGA ATSLYSATCF ALGKYGNGNP YPINLSAIIG LSGWLPCAKT LAGKLEEEQI KNRAASLPIV VCHGKADDVV PFKFGEKSSQ ALLSNGFKKV TFKPYSALGH HTIPQELDEL CAWLTSTLSL EG

References (5)

Title : A hydrophobic anchor mechanism defines a deacetylase family that suppresses host response against YopJ effectors - Burger_2017_Nat.Commun_8_2201
Author(s) : Burger M , Willige BC , Chory J
Ref : Nat Commun , 8 :2201 , 2017
Abstract :
PubMedSearch : Burger_2017_Nat.Commun_8_2201
PubMedID: 29259199
Gene_locus related to this paper: maize-b6t1C9 , arath-SOBR1 , arath-SOBRL , arath-AT5G20060

Title : The Arabidopsis lyrata genome sequence and the basis of rapid genome size change - Hu_2011_Nat.Genet_43_476
Author(s) : Hu TT , Pattyn P , Bakker EG , Cao J , Cheng JF , Clark RM , Fahlgren N , Fawcett JA , Grimwood J , Gundlach H , Haberer G , Hollister JD , Ossowski S , Ottilar RP , Salamov AA , Schneeberger K , Spannagl M , Wang X , Yang L , Nasrallah ME , Bergelson J , Carrington JC , Gaut BS , Schmutz J , Mayer KF , Van de Peer Y , Grigoriev IV , Nordborg M , Weigel D , Guo YL
Ref : Nat Genet , 43 :476 , 2011
Abstract :
PubMedSearch : Hu_2011_Nat.Genet_43_476
PubMedID: 21478890
Gene_locus related to this paper: arall-d7kc59 , arall-d7kfz1 , arall-d7kjk9 , arall-d7kk58 , arall-d7kuj1 , arall-d7kwx5 , arall-d7kzq8 , arall-d7laf7 , arall-D7LAK6 , arall-d7ltj2 , arall-d7lu11 , arall-d7ly06 , arall-d7lyn6 , arall-d7m1k0 , arall-d7m1k1 , arall-d7m1k3 , arall-d7m1l4 , arall-d7m814 , arall-d7mbk0 , arall-d7mbn8 , arall-d7mgs1 , arall-d7mi04 , arall-d7mld7 , arall-d7mpg7 , arall-d7mul9 , arath-At2g45610 , arath-At1g05790 , arath-At1g09980 , arath-At1g18360 , arath-AT1G29120 , arath-AT1G73920 , arath-AT1G76140 , arath-AT2G05260 , arath-At2g15230 , arath-At2g24280 , arath-AT2G42690 , arath-At2g47630 , arath-AT3G12150 , arath-At3g61680 , arath-AT3g62590 , arath-AT4G00500 , arath-AT4G25770 , arath-AT4g30610 , arath-At5g11650 , arath-At5g13640 , arath-AT5G19050 , arath-AT5G20060 , arath-AT5G20520 , arath-AT5G27320 , arath-At5g42930 , arath-At5g47330 , arath-CGEP , arath-clh1 , arath-clh2 , arath-F1N13.220 , arath-F2G14.100 , arath-F12A4.4 , arath-F14O10.2 , arath-SCP27 , arath-HNL , arath-GID1B , arath-LIP2 , arath-At5g17670 , arath-pip , arath-PLA11 , arath-PLA12 , arath-PLA13 , arath-PLA15 , arath-PLA17 , arath-Q8LPF5 , arath-Q9FFZ1 , arath-Q9FJ29 , arath-Q9FKP9 , arath-Q9FNF6 , arath-q9lhe8 , arath-Q9SFF6 , arath-q84w08 , arath-SCP7 , arath-SCP8 , arath-SCP26 , arath-SCP28 , arath-SCP33 , arath-SCP40 , arath-SCPL34 , arath-At4g12230 , arath-MES14 , arath-T19F11.2 , arath-MES10 , arath-At5g11790 , arath-T26B15.8 , arath-ZW18 , arall-d7l971 , arall-d7lfd3 , arall-d7lg04 , arall-d7lg05 , arall-d7lg06 , arall-d7lg07 , arall-d7mb17 , arall-d7mb18 , arall-d7l7v2 , arall-d7l7v3 , arall-d7lst0 , arall-d7lfw9 , arall-d7mgs6 , arall-d7mur3 , arall-d7kjr5 , arall-d7l7v1 , arall-d7ls88 , arall-d7kzg6 , arall-d7kcm6 , arall-d7krm0 , arall-d7kwe4 , arall-d7lri7 , arall-d7kq26

Title : Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs - Iida_2009_DNA.Res_16_155
Author(s) : Iida K , Fukami-Kobayashi K , Toyoda A , Sakaki Y , Kobayashi M , Seki M , Shinozaki K
Ref : DNA Research , 16 :155 , 2009
Abstract :
PubMedSearch : Iida_2009_DNA.Res_16_155
PubMedID: 19423640
Gene_locus related to this paper: arath-AT2G42690 , arath-AT5G20060 , arath-eds1 , arath-MES2 , arath-o65713 , arath-pip , arath-Q8LFB7 , arath-q66gm8 , arath-B9DFR3

Title : Features of Arabidopsis genes and genome discovered using full-length cDNAs - Alexandrov_2006_Plant.Mol.Biol_60_69
Author(s) : Alexandrov NN , Troukhan ME , Brover VV , Tatarinova T , Flavell RB , Feldmann KA
Ref : Plant Mol Biol , 60 :69 , 2006
Abstract :
PubMedSearch : Alexandrov_2006_Plant.Mol.Biol_60_69
PubMedID: 16463100
Gene_locus related to this paper: arath-AT2G05260 , arath-AT4G17480 , arath-At5g11650 , arath-AT5G20060 , arath-F1P2.110 , arath-F12L6.7 , arath-SCP16 , arath-q8lae9 , arath-Q8LFB7 , arath-q8s8g6 , arath-q9ffg7 , arath-T19F11.2 , arath-T26B15.8 , arath-f4jt64

Title : Full-length messenger RNA sequences greatly improve genome annotation - Haas_2002_Genome.Biol_3_RESEARCH0029
Author(s) : Haas BJ , Volfovsky N , Town CD , Troukhan M , Alexandrov N , Feldmann KA , Flavell RB , White O , Salzberg SL
Ref : Genome Biol , 3 :RESEARCH0029 , 2002
Abstract :
PubMedSearch : Haas_2002_Genome.Biol_3_RESEARCH0029
PubMedID: 12093376
Gene_locus related to this paper: arath-AT1G74640 , arath-At2g47630 , arath-AT4G17480 , arath-AT4G24380 , arath-At5g11650 , arath-AT5G19290 , arath-AT5G19630 , arath-AT5G20060 , arath-AT5G20520 , arath-AtD14 , arath-F1O17.3 , arath-F1O17.5 , arath-F1P2.110 , arath-F12L6.7 , arath-F22K18.40 , arath-At3g60340 , arath-LCAT1 , arath-PLA16 , arath-Q8L996 , arath-q8lae9 , arath-Q8LF34 , arath-Q8LFB7 , arath-Q8LFU1 , arath-q8s8g6 , arath-q9ffg7 , arath-Q9LNR2 , arath-SCP40 , arath-At4g12230 , arath-AT4G10030 , arath-T5M16.2 , arath-MES14 , arath-T19F11.2 , arath-Y1457 , arath-T26B15.8 , arath-SFGH , arath-f4jt64