Gene_Locus Report

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Gene_locus Report for: fuso4-j9mvr9

Fusarium oxysporum f. sp. lycopersici (strain 4287 / CBS 123668 / FGS 9935 / NRRL 34936) (Fusarium vascular wilt of tomato) (contaminant from bacteria?) Uncharacterized protein

Relationship
Family|Carb_B_Bacteria
Block| C
Position in NCBI Life Tree|Fusarium oxysporum f. sp. lycopersici
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Fungi: N E > Dikarya: N E > Ascomycota: N E > saccharomyceta: N E > Pezizomycotina: N E > leotiomyceta: N E > sordariomyceta: N E > Sordariomycetes: N E > Hypocreomycetidae: N E > Hypocreales: N E > Nectriaceae: N E > Fusarium: N E > Fusarium oxysporum species complex: N E > Fusarium oxysporum: N E > Fusarium oxysporum f. sp. lycopersici: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 UniProt : A0A0D2XSQ6, A0A0J9V5X4
2 Interpro : A0A0D2XSQ6, A0A0J9V5X4
2 Pfam : A0A0D2XSQ6, A0A0J9V5X4
2 PIRSF : A0A0D2XSQ6, A0A0J9V5X4
2 SUPERFAM : A0A0D2XSQ6, A0A0J9V5X4
Sequence
Graphical view for this peptide sequence: fuso4-j9mvr9
Colored MSA for Carb_B_Bacteria (raw)
MPEFHFGVPFAAPPFGPNYLRPPQAPESWGGVRDALEFGPKSPQVPYPPG
ISEGLAELVGTGKDCLTLNVWTSSLGAAVRPVMVWIPGGMFEFHATGAVA
YYDGGRFARDGVVCVTISYRVGAQGFLYLDDGVPNLGLLDQIAALEWVQK
NITLFGGDPGKVTIFGESAGGMSVATLLTVPRAKGLFHRAVVQSGNSPKL
NSTATGKRIGQRLAEILCIEARWEAINATPSDRVLQAQAKLRDDLLAHPD
PAFWGEVALSYLPWAPIIDGDILPEHPIDAIRAGAAGDIDLVVGSNTEET
RLFLVSDGSIDRITEETLSVTAGSYGLPQEGLDAYRASHPGASAGELFSA
IQTDWYWRIPAIRFADAHAKTARASTYMYEFAWRSPQMGGRLGASHALEI
AFVFDTLGLGTKPLLGPTPPQELADAMHRAWVAFATTGDPGWPKYDARRR
LTMHFDIDSRAVDDPLDKELKFWGSVH
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MPEFHFGVPFAAPPFGPNYLRPPQAPESWGGVRDALEFGPKSPQVPYPPG
ISEGLAELVGTGKDCLTLNVWTSSLGAAVRPVMVWIPGGMFEFHATGAVA
YYDGGRFARDGVVCVTISYRVGAQGFLYLDDGVPNLGLLDQIAALEWVQK
NITLFGGDPGKVTIFGESAGGMSVATLLTVPRAKGLFHRAVVQSGNSPKL
NSTATGKRIGQRLAEILCIEARWEAINATPSDRVLQAQAKLRDDLLAHPD
PAFWGEVALSYLPWAPIIDGDILPEHPIDAIRAGAAGDIDLVVGSNTEET
RLFLVSDGSIDRITEETLSVTAGSYGLPQEGLDAYRASHPGASAGELFSA
IQTDWYWRIPAIRFADAHAKTARASTYMYEFAWRSPQMGGRLGASHALEI
AFVFDTLGLGTKPLLGPTPPQELADAMHRAWVAFATTGDPGWPKYDARRR
LTMHFDIDSRAVDDPLDKELKFWGSVH


Reference
    Title: Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
    Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M and Rep M <53 more author(s)>
    Ref: Nature, 464:367, 2010 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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