Gene_Locus Report

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Gene_locus Report for: orysa-q6j657

Oryza sativa subsp. japonica subsp. indica (Rice; Oryza punctata (Red rice)) cell death associated protein (hypothetical protein p0668f02.3)

Comment
Other strains: Oryza sativa subsp. japonica subsp. indica (Rice); Oryza punctata (Red rice); Oryza nivara (Indian wild rice) (Oryza sativa f. spontanea); Oryza rufipogon (Brownbeard rice) (Asian wild rice; Oryza glumipatula; Oryza meridionalis


Relationship
Family|Plant_carboxylesterase
Block| H
Position in NCBI Life Tree|Oryza sativa
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Graphical view for this peptide sequence: orysa-q6j657
Colored MSA for Plant_carboxylesterase (raw)
MAIATESQQAQVQAAATDAVAAAAVGRKVVDEVSGWLRVFDDGTVDRTWT
GPPEVLPLMQPVPAYAEPRDGHTLHDLPGEPNLRVYLPEVALAERRLPVV
VQLHGGGFCISHPSWLMYHHFYARLACALPAVVVAVELPLAPERRLPAHI
DTGVDGLRRLRSIALSDAAALGDPAAELLRTAADFSRVFLIGDSSGGNLV
HHVGARVGEDGADSWAPLRVAGGIPLHPGFVHATRSKSELEPRPDSVFFT
LDMLDKFLAMALPEGATKDHPYTCPMGPNAPPLESVPLPPLLVAVAEHDL
IRDTNLEYCDALRTAGKDVEVLVNRGMSHSFYLNKYAVDMDPATGERTRE
LVDAIKSFVDRH
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MAIATESQQAQVQAAATDAVAAAAVGRKVVDEVSGWLRVFDDGTVDRTWT
GPPEVLPLMQPVPAYAEPRDGHTLHDLPGEPNLRVYLPEVALAERRLPVV
VQLHGGGFCISHPSWLMYHHFYARLACALPAVVVAVELPLAPERRLPAHI
DTGVDGLRRLRSIALSDAAALGDPAAELLRTAADFSRVFLIGDSSGGNLV
HHVGARVGEDGADSWAPLRVAGGIPLHPGFVHATRSKSELEPRPDSVFFT
LDMLDKFLAMALPEGATKDHPYTCPMGPNAPPLESVPLPPLLVAVAEHDL
IRDTNLEYCDALRTAGKDVEVLVNRGMSHSFYLNKYAVDMDPATGERTRE
LVDAIKSFVDRH


References
1 more
    Title: Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
    Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R and Sasaki T <85 more author(s)>
    Ref: Genome Res, 17:175, 2007 : PubMed

            

    Title: The map-based sequence of the rice genome.
    Matsumo T, Sasaki T
    Ref: Nature, 436:793, 2005 : PubMed

            

    Title: The Genomes of Oryza sativa: a history of duplications
    Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S and Yang H <88 more author(s)>
    Ref: PLoS Biol, 3:e38, 2005 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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