Gene_Locus Report

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Gene_locus Report for: orysj-b9fkb0

Oryza sativa subsp. japonica (Rice) subsp. indica (Rice), Oryza glaberrima (African rice) Putative uncharacterized protein

Comment
Other strains: Oryza sativa subsp. japonica (Rice) subsp. indica (Rice) Oryza glaberrima (African rice)


Relationship
Family|Pectinacetylesterase-Notum
Block| X
Position in NCBI Life Tree|Oryza sativa subsp. japonica
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E > Oryza sativa Japonica Group: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : CM000142, CM000130, AP008211
>3 UniProt links 1 more: B9FKB0, B8AWZ5, I1PRU4
>3 UniProt links 1 more: B9FKB0, B8AWZ5, I1PRU4
>3 Interpro links 1 more: B9FKB0, B8AWZ5, I1PRU4
>3 Pfam links 1 more: B9FKB0, B8AWZ5, I1PRU4
>3 PIRSF links 1 more: B9FKB0, B8AWZ5, I1PRU4
>3 SUPERFAM links 1 more: B9FKB0, B8AWZ5, I1PRU4
Sequence
Graphical view for this peptide sequence: orysj-b9fkb0
Colored MSA for Pectinacetylesterase-Notum (raw)
MASPTSSASAPASHHLRLWWGRRGRGGAVGATFTVALLAAALLLALSLYA
SSLPRAPTTPSSSSNLVGLTLVRRAKEKGAVCLDGSAPGYHLQRGSGTGS
QNWLLHLEGGGWCRNLRSCASRQKSVLGSSQYMECQIEFAGILSNDKFQN
PDFYNWNKVKIRYCDGASFSGNVKNELQNGTKFFFRGQRIWEAVMSELLL
KGLRHAKQAFLTGCSAGGLATFIHCDNFRTLLPKDSRVKCLADGGFFLDV
EDISGQRTMRAFYNDVVRLQDLRGRFPHCGPNMDLGQCFFPSEVVKDIIT
PVFVLNPAYDAWQVQHVLSPVASDPQHSWLECRLDISKCDSNQLEILQGF
RKKLHDTISELKHKKDWGFFIDSCFIHCQSLNSLTWHSPSSLRVNNKTIA
EAVGDWFFDRREVKEIDCEYPCNPTCHNLVFAKPFKA
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MASPTSSASAPASHHLRLWWGRRGRGGAVGATFTVALLAAALLLALSLYA
SSLPRAPTTPSSSSNLVGLTLVRRAKEKGAVCLDGSAPGYHLQRGSGTGS
QNWLLHLEGGGWCRNLRSCASRQKSVLGSSQYMECQIEFAGILSNDKFQN
PDFYNWNKVKIRYCDGASFSGNVKNELQNGTKFFFRGQRIWEAVMSELLL
KGLRHAKQAFLTGCSAGGLATFIHCDNFRTLLPKDSRVKCLADGGFFLDV
EDISGQRTMRAFYNDVVRLQDLRGRFPHCGPNMDLGQCFFPSEVVKDIIT
PVFVLNPAYDAWQVQHVLSPVASDPQHSWLECRLDISKCDSNQLEILQGF
RKKLHDTISELKHKKDWGFFIDSCFIHCQSLNSLTWHSPSSLRVNNKTIA
EAVGDWFFDRREVKEIDCEYPCNPTCHNLVFAKPFKA


References
    Title: The Rice Annotation Project Database (RAP-DB): 2008 update
    Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T and Echeverria M <80 more author(s)>
    Ref: Nucleic Acids Research, 36:D1028, 2008 : PubMed

            

    Title: The map-based sequence of the rice genome.
    Matsumo T, Sasaki T
    Ref: Nature, 436:793, 2005 : PubMed

            

    Title: The Genomes of Oryza sativa: a history of duplications
    Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S and Yang H <88 more author(s)>
    Ref: PLoS Biol, 3:e38, 2005 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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