tetng-nlgn3b

 
Tetraodon nigroviridis (Spotted green pufferfish) (Chelonodon nigroviridis) hypothetical protein (fragment)

Relationship
Family Neuroligin
Block C
Tetraodon nigroviridis position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Actinopterygii: N E > Actinopteri: N E > Neopterygii: N E > Teleostei: N E > Osteoglossocephalai: N E > Clupeocephala: N E > Euteleosteomorpha: N E > Neoteleostei: N E > Eurypterygia: N E > Ctenosquamata: N E > Acanthomorphata: N E > Euacanthomorphacea: N E > Percomorphaceae: N E > Eupercaria: N E > Tetraodontiformes: N E > Tetraodontoidei: N E > Tetradontoidea: N E > Tetraodontidae: N E > Tetraodon: N E > Tetraodon nigroviridis: N E

Molecular evidence
Database
No mutation
No structure
No kinetic



2 Genbank : CAAE01014703, GQ489231
3 UniProt : Q4S8V2, D2X2K0, H3D2K9
3 UniProtTrembl : Q4S8V2, D2X2K0, H3D2K9
3 Interpro : Q4S8V2, D2X2K0, H3D2K9
3 Prodom : Q4S8V2, D2X2K0, H3D2K9
3 Pfam : Q4S8V2, D2X2K0, H3D2K9
3 PIRSF : Q4S8V2, D2X2K0, H3D2K9
3 SUPERFAM : Q4S8V2, D2X2K0, H3D2K9
3 QuickSwissBlast : Q4S8V2, D2X2K0, H3D2K9
 
Sequence
Graphical view for this peptide sequence: tetng-nlgn3b
Colored MSA for Neuroligin (raw)
MESRHGEGVRFCKSRFAFTAMNCGSWGAPYVAEAYLGVITVRVKGAVGTV
QIMWLATFRDHLLPSHLLHQQGTVTITHCALLWWILCSCWSFTKTTSQKF
YPTVTTQFGKLRGLRVPVPSEVLRPVDQYLGVPYAAPPVGDKRFMPPEQP
TAWSGIKNATHFMPVCPQNIHNTVPEIMMPIWFTYNLDTVATYIQDQSED
CLYLNIYAPTEDDIRDSEARPVMVYIHGGSYMEGTGNMMDGSVLASYGNV
VVVTLNYRIGILGFLSTGDQAAKGNYGLLDQIQALRWISKNIGYFGGDPG
RITVFGSGIGASCVSLLTLSHHSEGLFHRAIIQSGSALSSWAVNYQPVKY
TRMLAERVGCNVLDTLDMVSCLQKKSAKELVEQDIQAARYRVAFGPVIDG
DVIPDDPEILMEQGEFLNYDIMLGVNQGEGLRFVENVMDLEDGVSGSDFD
FAVSDFVDSLYGYPEGKDTLRETIKFMYTDWADKDNPETRRKTLVALFTD
HQWVEPSVVTADLHARYGSPTYFYAFYHHCQSLMKPVWSDSAHGDEVPYV
FGIPMVGPTDLFPCNFSRNDIMLSAVVMTYWTNFAKSGDPNKPVPQDTKF
IHTKANRFEEVAWSKYDPFDQLYLHIGLKPRIRDHYRATKVAFWKHLVPH
LYNLHDMFHYSSTTTKVTPLDPTQSNGKRSGTTGRPPASPGHNSGESGRE
MGPLIMPNPRDYSTELSVTIAVGASLLFLNVLAFAALYYRKDKRSRQDTS
QQPSPQCDTKGNNNTSTIDETQSSQQRGQCEALHNPLHVSPSMDYSLSRR
HSPDDIPLMTPNNITMIPNSLMGLSNMSPYSTFPAGYSSKGLPSTHSTTR
V
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MESRHGEGVRFCKSRFAFTAMNCGSWGAPYVAEAYLGVITVRVKGAVGTV
QIMWLATFRDHLLPSHLLHQQGTVTITHCALLWWILCSCWSFTKTTSQKF
YPTVTTQFGKLRGLRVPVPSEVLRPVDQYLGVPYAAPPVGDKRFMPPEQP
TAWSGIKNATHFMPVCPQNIHNTVPEIMMPIWFTYNLDTVATYIQDQSED
CLYLNIYAPTEDDIRDSEARPVMVYIHGGSYMEGTGNMMDGSVLASYGNV
VVVTLNYRIGILGFLSTGDQAAKGNYGLLDQIQALRWISKNIGYFGGDPG
RITVFGSGIGASCVSLLTLSHHSEGLFHRAIIQSGSALSSWAVNYQPVKY
TRMLAERVGCNVLDTLDMVSCLQKKSAKELVEQDIQAARYRVAFGPVIDG
DVIPDDPEILMEQGEFLNYDIMLGVNQGEGLRFVENVMDLEDGVSGSDFD
FAVSDFVDSLYGYPEGKDTLRETIKFMYTDWADKDNPETRRKTLVALFTD
HQWVEPSVVTADLHARYGSPTYFYAFYHHCQSLMKPVWSDSAHGDEVPYV
FGIPMVGPTDLFPCNFSRNDIMLSAVVMTYWTNFAKSGDPNKPVPQDTKF
IHTKANRFEEVAWSKYDPFDQLYLHIGLKPRIRDHYRATKVAFWKHLVPH
LYNLHDMFHYSSTTTKVTPLDPTQSNGKRSGTTGRPPASPGHNSGESGRE
MGPLIMPNPRDYSTELSVTIAVGASLLFLNVLAFAALYYRKDKRSRQDTS
QQPSPQCDTKGNNNTSTIDETQSSQQRGQCEALHNPLHVSPSMDYSLSRR
HSPDDIPLMTPNNITMIPNSLMGLSNMSPYSTFPAGYSSKGLPSTHSTTR
V

no DNA




References
    Title: Characterization of the neuroligin gene family expression and evolution in zebrafish
    Rissone A, Sangiorgio L, Monopoli M, Beltrame M, Zucchi I, Bussolino F, Arese M, Cotelli F
    Ref: Developmental Dynamics, 239:688, 2010 : PubMed

            

    Title: Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
    Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C and Roest Crollius H <51 more author(s)>
    Ref: Nature, 431:946, 2004 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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