| Title : Genome-scale phylogeny and comparative genomics of the fungal order Sordariales - Hensen_2023_Mol.Phylogenet.Evol_189_107938 |
| Author(s) : Hensen N , Bonometti L , Westerberg I , Brannstrom IO , Guillou S , Cros-Aarteil S , Calhoun S , Haridas S , Kuo A , Mondo S , Pangilinan J , Riley R , LaButti K , Andreopoulos B , Lipzen A , Chen C , Yan M , Daum C , Ng V , Clum A , Steindorff A , Ohm RA , Martin F , Silar P , Natvig DO , Lalanne C , Gautier V , Ament-Velasquez SL , Kruys , Hutchinson MI , Powell AJ , Barry K , Miller AN , Grigoriev IV , Debuchy R , Gladieux P , Hiltunen Thoren M , Johannesson H |
| Ref : Mol Phylogenet Evol , 189 :107938 , 2023 |
| Abstract : |
| PubMedSearch : Hensen_2023_Mol.Phylogenet.Evol_189_107938 |
| PubMedID: 37820761 |
| Gene_locus related to this paper: sorbr-a0aae0u241 , sorbr-a0aae0u2g0 , sorbr-a0aae0ufw6 |
| Title : Genome-scale phylogeny and comparative genomics of the fungal order Sordariales - Hensen_2023_Mol.Phylogenet.Evol_189_107938 |
| Author(s) : Hensen N , Bonometti L , Westerberg I , Brannstrom IO , Guillou S , Cros-Aarteil S , Calhoun S , Haridas S , Kuo A , Mondo S , Pangilinan J , Riley R , LaButti K , Andreopoulos B , Lipzen A , Chen C , Yan M , Daum C , Ng V , Clum A , Steindorff A , Ohm RA , Martin F , Silar P , Natvig DO , Lalanne C , Gautier V , Ament-Velasquez SL , Kruys , Hutchinson MI , Powell AJ , Barry K , Miller AN , Grigoriev IV , Debuchy R , Gladieux P , Hiltunen Thoren M , Johannesson H |
| Ref : Mol Phylogenet Evol , 189 :107938 , 2023 |
| Abstract : |
| PubMedSearch : Hensen_2023_Mol.Phylogenet.Evol_189_107938 |
| PubMedID: 37820761 |
| Gene_locus related to this paper: sorbr-a0aae0u241 , sorbr-a0aae0u2g0 , sorbr-a0aae0ufw6 |
| Title : Genome-scale phylogeny and comparative genomics of the fungal order Sordariales - Hensen_2023_Mol.Phylogenet.Evol_189_107938 |
| Author(s) : Hensen N , Bonometti L , Westerberg I , Brannstrom IO , Guillou S , Cros-Aarteil S , Calhoun S , Haridas S , Kuo A , Mondo S , Pangilinan J , Riley R , LaButti K , Andreopoulos B , Lipzen A , Chen C , Yan M , Daum C , Ng V , Clum A , Steindorff A , Ohm RA , Martin F , Silar P , Natvig DO , Lalanne C , Gautier V , Ament-Velasquez SL , Kruys , Hutchinson MI , Powell AJ , Barry K , Miller AN , Grigoriev IV , Debuchy R , Gladieux P , Hiltunen Thoren M , Johannesson H |
| Ref : Mol Phylogenet Evol , 189 :107938 , 2023 |
| Abstract : |
| PubMedSearch : Hensen_2023_Mol.Phylogenet.Evol_189_107938 |
| PubMedID: 37820761 |
| Gene_locus related to this paper: sorbr-a0aae0u241 , sorbr-a0aae0u2g0 , sorbr-a0aae0ufw6 |
| Title : 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens - Haridas_2020_Stud.Mycol_96_141 |
| Author(s) : Haridas S , Albert R , Binder M , Bloem J , LaButti K , Salamov A , Andreopoulos B , Baker SE , Barry K , Bills G , Bluhm BH , Cannon C , Castanera R , Culley DE , Daum C , Ezra D , Gonzalez JB , Henrissat B , Kuo A , Liang C , Lipzen A , Lutzoni F , Magnuson J , Mondo SJ , Nolan M , Ohm RA , Pangilinan J , Park HJ , Ramirez L , Alfaro M , Sun H , Tritt A , Yoshinaga Y , Zwiers LH , Turgeon BG , Goodwin SB , Spatafora JW , Crous PW , Grigoriev IV |
| Ref : Stud Mycol , 96 :141 , 2020 |
| Abstract : |
| PubMedSearch : Haridas_2020_Stud.Mycol_96_141 |
| PubMedID: 32206138 |
| Gene_locus related to this paper: 9pezi-a0a6a6q6p9 |
| Title : 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens - Haridas_2020_Stud.Mycol_96_141 |
| Author(s) : Haridas S , Albert R , Binder M , Bloem J , LaButti K , Salamov A , Andreopoulos B , Baker SE , Barry K , Bills G , Bluhm BH , Cannon C , Castanera R , Culley DE , Daum C , Ezra D , Gonzalez JB , Henrissat B , Kuo A , Liang C , Lipzen A , Lutzoni F , Magnuson J , Mondo SJ , Nolan M , Ohm RA , Pangilinan J , Park HJ , Ramirez L , Alfaro M , Sun H , Tritt A , Yoshinaga Y , Zwiers LH , Turgeon BG , Goodwin SB , Spatafora JW , Crous PW , Grigoriev IV |
| Ref : Stud Mycol , 96 :141 , 2020 |
| Abstract : |
| PubMedSearch : Haridas_2020_Stud.Mycol_96_141 |
| PubMedID: 32206138 |
| Gene_locus related to this paper: 9pezi-a0a6a6q6p9 |
| Title : 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens - Haridas_2020_Stud.Mycol_96_141 |
| Author(s) : Haridas S , Albert R , Binder M , Bloem J , LaButti K , Salamov A , Andreopoulos B , Baker SE , Barry K , Bills G , Bluhm BH , Cannon C , Castanera R , Culley DE , Daum C , Ezra D , Gonzalez JB , Henrissat B , Kuo A , Liang C , Lipzen A , Lutzoni F , Magnuson J , Mondo SJ , Nolan M , Ohm RA , Pangilinan J , Park HJ , Ramirez L , Alfaro M , Sun H , Tritt A , Yoshinaga Y , Zwiers LH , Turgeon BG , Goodwin SB , Spatafora JW , Crous PW , Grigoriev IV |
| Ref : Stud Mycol , 96 :141 , 2020 |
| Abstract : |
| PubMedSearch : Haridas_2020_Stud.Mycol_96_141 |
| PubMedID: 32206138 |
| Gene_locus related to this paper: 9pezi-a0a6a6q6p9 |
| Title : Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species - Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| Author(s) : Kjaerbolling I , Vesth TC , Frisvad JC , Nybo JL , Theobald S , Kuo A , Bowyer P , Matsuda Y , Mondo S , Lyhne EK , Kogle ME , Clum A , Lipzen A , Salamov A , Ngan CY , Daum C , Chiniquy J , Barry K , LaButti K , Haridas S , Simmons BA , Magnuson JK , Mortensen UH , Larsen TO , Grigoriev IV , Baker SE , Andersen MR |
| Ref : Proc Natl Acad Sci U S A , 115 :E753 , 2018 |
| Abstract : |
| PubMedSearch : Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| PubMedID: 29317534 |
| Gene_locus related to this paper: 9euro-a0a0f8xhh7 , 9euro-a0a2t5ll04 , aspn1-nvfd |
| Title : Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species - Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| Author(s) : Kjaerbolling I , Vesth TC , Frisvad JC , Nybo JL , Theobald S , Kuo A , Bowyer P , Matsuda Y , Mondo S , Lyhne EK , Kogle ME , Clum A , Lipzen A , Salamov A , Ngan CY , Daum C , Chiniquy J , Barry K , LaButti K , Haridas S , Simmons BA , Magnuson JK , Mortensen UH , Larsen TO , Grigoriev IV , Baker SE , Andersen MR |
| Ref : Proc Natl Acad Sci U S A , 115 :E753 , 2018 |
| Abstract : |
| PubMedSearch : Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| PubMedID: 29317534 |
| Gene_locus related to this paper: 9euro-a0a0f8xhh7 , 9euro-a0a2t5ll04 , aspn1-nvfd |
| Title : Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species - Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| Author(s) : Kjaerbolling I , Vesth TC , Frisvad JC , Nybo JL , Theobald S , Kuo A , Bowyer P , Matsuda Y , Mondo S , Lyhne EK , Kogle ME , Clum A , Lipzen A , Salamov A , Ngan CY , Daum C , Chiniquy J , Barry K , LaButti K , Haridas S , Simmons BA , Magnuson JK , Mortensen UH , Larsen TO , Grigoriev IV , Baker SE , Andersen MR |
| Ref : Proc Natl Acad Sci U S A , 115 :E753 , 2018 |
| Abstract : |
| PubMedSearch : Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| PubMedID: 29317534 |
| Gene_locus related to this paper: 9euro-a0a0f8xhh7 , 9euro-a0a2t5ll04 , aspn1-nvfd |
| Title : Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium - Gutierrez_2015_Genome.Announc_3_e00793 |
| Author(s) : Gutierrez T , Whitman WB , Huntemann M , Copeland A , Chen A , Kyrpides N , Markowitz V , Pillay M , Ivanova N , Mikhailova N , Ovchinnikova G , Andersen E , Pati A , Stamatis D , Reddy TB , Ngan CY , Chovatia M , Daum C , Shapiro N , Cantor MN , Woyke T |
| Ref : Genome Announc , 3 : , 2015 |
| Abstract : |
| PubMedSearch : Gutierrez_2015_Genome.Announc_3_e00793 |
| PubMedID: 26184945 |
| Title : Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium - Gutierrez_2015_Genome.Announc_3_e00793 |
| Author(s) : Gutierrez T , Whitman WB , Huntemann M , Copeland A , Chen A , Kyrpides N , Markowitz V , Pillay M , Ivanova N , Mikhailova N , Ovchinnikova G , Andersen E , Pati A , Stamatis D , Reddy TB , Ngan CY , Chovatia M , Daum C , Shapiro N , Cantor MN , Woyke T |
| Ref : Genome Announc , 3 : , 2015 |
| Abstract : |
| PubMedSearch : Gutierrez_2015_Genome.Announc_3_e00793 |
| PubMedID: 26184945 |
| Title : Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium - Gutierrez_2015_Genome.Announc_3_e00793 |
| Author(s) : Gutierrez T , Whitman WB , Huntemann M , Copeland A , Chen A , Kyrpides N , Markowitz V , Pillay M , Ivanova N , Mikhailova N , Ovchinnikova G , Andersen E , Pati A , Stamatis D , Reddy TB , Ngan CY , Chovatia M , Daum C , Shapiro N , Cantor MN , Woyke T |
| Ref : Genome Announc , 3 : , 2015 |
| Abstract : |
| PubMedSearch : Gutierrez_2015_Genome.Announc_3_e00793 |
| PubMedID: 26184945 |
| Title : Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010 - Klenk_2011_Stand.Genomic.Sci_5_121 |
| Author(s) : Klenk HP , Lapidus A , Chertkov O , Copeland A , Del Rio TG , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Han C , Bruce D , Goodwin L , Pitluck S , Pati A , Ivanova N , Mavromatis K , Daum C , Chen A , Palaniappan K , Chang YJ , Land M , Hauser L , Jeffries CD , Detter JC , Rohde M , Abt B , Pukall R , Goker M , Bristow J , Markowitz V , Hugenholtz P , Eisen JA |
| Ref : Stand Genomic Sci , 5 :121 , 2011 |
| Abstract : |
| PubMedSearch : Klenk_2011_Stand.Genomic.Sci_5_121 |
| PubMedID: 22180816 |
| Title : Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010 - Klenk_2011_Stand.Genomic.Sci_5_121 |
| Author(s) : Klenk HP , Lapidus A , Chertkov O , Copeland A , Del Rio TG , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Han C , Bruce D , Goodwin L , Pitluck S , Pati A , Ivanova N , Mavromatis K , Daum C , Chen A , Palaniappan K , Chang YJ , Land M , Hauser L , Jeffries CD , Detter JC , Rohde M , Abt B , Pukall R , Goker M , Bristow J , Markowitz V , Hugenholtz P , Eisen JA |
| Ref : Stand Genomic Sci , 5 :121 , 2011 |
| Abstract : |
| PubMedSearch : Klenk_2011_Stand.Genomic.Sci_5_121 |
| PubMedID: 22180816 |
| Title : Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010 - Klenk_2011_Stand.Genomic.Sci_5_121 |
| Author(s) : Klenk HP , Lapidus A , Chertkov O , Copeland A , Del Rio TG , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Han C , Bruce D , Goodwin L , Pitluck S , Pati A , Ivanova N , Mavromatis K , Daum C , Chen A , Palaniappan K , Chang YJ , Land M , Hauser L , Jeffries CD , Detter JC , Rohde M , Abt B , Pukall R , Goker M , Bristow J , Markowitz V , Hugenholtz P , Eisen JA |
| Ref : Stand Genomic Sci , 5 :121 , 2011 |
| Abstract : |
| PubMedSearch : Klenk_2011_Stand.Genomic.Sci_5_121 |
| PubMedID: 22180816 |
| Title : Complete genome sequence of Haliangium ochraceum type strain (SMP-2) - Ivanova_2010_Stand.Genomic.Sci_2_96 |
| Author(s) : Ivanova N , Daum C , Lang E , Abt B , Kopitz M , Saunders E , Lapidus A , Lucas S , Glavina Del Rio T , Nolan M , Tice H , Copeland A , Cheng JF , Chen F , Bruce D , Goodwin L , Pitluck S , Mavromatis K , Pati A , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brettin T , Rohde M , Goker M , Bristow J , Markowitz V , Eisen JA , Hugenholtz P , Kyrpides NC , Klenk HP |
| Ref : Stand Genomic Sci , 2 :96 , 2010 |
| Abstract : |
| PubMedSearch : Ivanova_2010_Stand.Genomic.Sci_2_96 |
| PubMedID: 21304682 |
| Gene_locus related to this paper: halo1-d0lid9 , halo1-d0lm49 , halo1-d0lrn3 , halo1-d0ljm2 |
| Title : Complete genome sequence of Haliangium ochraceum type strain (SMP-2) - Ivanova_2010_Stand.Genomic.Sci_2_96 |
| Author(s) : Ivanova N , Daum C , Lang E , Abt B , Kopitz M , Saunders E , Lapidus A , Lucas S , Glavina Del Rio T , Nolan M , Tice H , Copeland A , Cheng JF , Chen F , Bruce D , Goodwin L , Pitluck S , Mavromatis K , Pati A , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brettin T , Rohde M , Goker M , Bristow J , Markowitz V , Eisen JA , Hugenholtz P , Kyrpides NC , Klenk HP |
| Ref : Stand Genomic Sci , 2 :96 , 2010 |
| Abstract : |
| PubMedSearch : Ivanova_2010_Stand.Genomic.Sci_2_96 |
| PubMedID: 21304682 |
| Gene_locus related to this paper: halo1-d0lid9 , halo1-d0lm49 , halo1-d0lrn3 , halo1-d0ljm2 |
| Title : Complete genome sequence of Haliangium ochraceum type strain (SMP-2) - Ivanova_2010_Stand.Genomic.Sci_2_96 |
| Author(s) : Ivanova N , Daum C , Lang E , Abt B , Kopitz M , Saunders E , Lapidus A , Lucas S , Glavina Del Rio T , Nolan M , Tice H , Copeland A , Cheng JF , Chen F , Bruce D , Goodwin L , Pitluck S , Mavromatis K , Pati A , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brettin T , Rohde M , Goker M , Bristow J , Markowitz V , Eisen JA , Hugenholtz P , Kyrpides NC , Klenk HP |
| Ref : Stand Genomic Sci , 2 :96 , 2010 |
| Abstract : |
| PubMedSearch : Ivanova_2010_Stand.Genomic.Sci_2_96 |
| PubMedID: 21304682 |
| Gene_locus related to this paper: halo1-d0lid9 , halo1-d0lm49 , halo1-d0lrn3 , halo1-d0ljm2 |