| Title : Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds - Hwang_2016_Genome.Announc_4_e01226 |
| Author(s) : Hwang C , Copeland A , Lucas S , Lapidus A , Barry K , Detter JC , Glavina Del Rio T , Hammon N , Israni S , Dalin E , Tice H , Pitluck S , Chertkov O , Brettin T , Bruce D , Han C , Schmutz J , Larimer F , Land ML , Hauser L , Kyrpides N , Mikhailova N , Ye Q , Zhou J , Richardson P , Fields MW |
| Ref : Genome Announc , 4 : , 2016 |
| Abstract : |
| PubMedSearch : Hwang_2016_Genome.Announc_4_e01226 |
| PubMedID: 27811105 |
| Gene_locus related to this paper: alkmq-a6tu78 |
| Title : Complete Genome Sequence of Methanosphaerula palustris E1-9CT, a Hydrogenotrophic Methanogen Isolated from a Minerotrophic Fen Peatland - Cadillo-Quiroz_2015_Genome.Announc_3_e01280 |
| Author(s) : Cadillo-Quiroz H , Browne P , Kyrpides N , Woyke T , Goodwin L , Detter C , Yavitt JB , Zinder SH |
| Ref : Genome Announc , 3 :e01280 , 2015 |
| Abstract : |
| PubMedSearch : Cadillo-Quiroz_2015_Genome.Announc_3_e01280 |
| PubMedID: 26543115 |
| Gene_locus related to this paper: metpe-metxa |
| Title : Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium - Gutierrez_2015_Genome.Announc_3_e00793 |
| Author(s) : Gutierrez T , Whitman WB , Huntemann M , Copeland A , Chen A , Kyrpides N , Markowitz V , Pillay M , Ivanova N , Mikhailova N , Ovchinnikova G , Andersen E , Pati A , Stamatis D , Reddy TB , Ngan CY , Chovatia M , Daum C , Shapiro N , Cantor MN , Woyke T |
| Ref : Genome Announc , 3 : , 2015 |
| Abstract : |
| PubMedSearch : Gutierrez_2015_Genome.Announc_3_e00793 |
| PubMedID: 26184945 |
| Title : Complete Genome sequence of Burkholderia phymatum STM815(T), a broad host range and efficient nitrogen-fixing symbiont of Mimosa species - Moulin_2014_Stand.Genomic.Sci_9_763 |
| Author(s) : Moulin L , Klonowska A , Caroline B , Booth K , Vriezen JA , Melkonian R , James EK , Young JP , Bena G , Hauser L , Land M , Kyrpides N , Bruce D , Chain P , Copeland A , Pitluck S , Woyke T , Lizotte-Waniewski M , Bristow J , Riley M |
| Ref : Stand Genomic Sci , 9 :763 , 2014 |
| Abstract : |
| PubMedSearch : Moulin_2014_Stand.Genomic.Sci_9_763 |
| PubMedID: 25197461 |
| Gene_locus related to this paper: parp8-b2jpd8 , parp8-b2jvh3 |
| Title : Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin - Murugapiran_2013_Genome.Announc_1_e00106 |
| Author(s) : Murugapiran SK , Huntemann M , Wei CL , Han J , Detter JC , Han CS , Erkkila TH , Teshima H , Chen A , Kyrpides N , Mavrommatis K , Markowitz V , Szeto E , Ivanova N , Pagani I , Lam J , McDonald AI , Dodsworth JA , Pati A , Goodwin L , Peters L , Pitluck S , Woyke T , Hedlund BP |
| Ref : Genome Announc , 1 : , 2013 |
| Abstract : |
| PubMedSearch : Murugapiran_2013_Genome.Announc_1_e00106 |
| PubMedID: 23405355 |
| Gene_locus related to this paper: thet2-q72hz1 , thet2-q72j75 , theth-TTC1787 , theos-k7r7w9 , theos-k7r725 , theth-h9zpz9 , theos-k7riw9 , theos-k7qw42 , theos-k7r3i4 |
| Title : Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida - Sen_2013_Genome.Announc_1_e0010313 |
| Author(s) : Sen A , Beauchemin N , Bruce D , Chain P , Chen A , Walston Davenport K , Deshpande S , Detter C , Furnholm T , Ghodbhane-Gtari F , Goodwin L , Gtari M , Han C , Han J , Huntemann M , Ivanova N , Kyrpides N , Land ML , Markowitz V , Mavrommatis K , Nolan M , Nouioui I , Pagani I , Pati A , Pitluck S , Santos CL , Sur S , Szeto E , Tavares F , Teshima H , Thakur S , Wall L , Woyke T , Wishart J , Tisa LS |
| Ref : Genome Announc , 1 :e0010313 , 2013 |
| Abstract : |
| PubMedSearch : Sen_2013_Genome.Announc_1_e0010313 |
| PubMedID: 23516220 |
| Gene_locus related to this paper: 9acto-i8qvq8 , 9actn-i8qfl2 |
| Title : Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis - Ghodhbane-Gtari_2013_Genome.Announc_1_e0008513 |
| Author(s) : Ghodhbane-Gtari F , Beauchemin N , Bruce D , Chain P , Chen A , Walston Davenport K , Deshpande S , Detter C , Furnholm T , Goodwin L , Gtari M , Han C , Han J , Huntemann M , Ivanova N , Kyrpides N , Land ML , Markowitz V , Mavrommatis K , Nolan M , Nouioui I , Pagani I , Pati A , Pitluck S , Santos CL , Sen A , Sur S , Szeto E , Tavares F , Teshima H , Thakur S , Wall L , Woyke T , Tisa LS |
| Ref : Genome Announc , 1 :e0008513 , 2013 |
| Abstract : |
| PubMedSearch : Ghodhbane-Gtari_2013_Genome.Announc_1_e0008513 |
| PubMedID: 23516212 |
| Gene_locus related to this paper: 9acto-g6hh93 |
| Title : Complete genome sequence of Dehalobacter restrictus PER-K23(T.) - Kruse_2013_Stand.Genomic.Sci_8_375 |
| Author(s) : Kruse T , Maillard J , Goodwin L , Woyke T , Teshima H , Bruce D , Detter C , Tapia R , Han C , Huntemann M , Wei CL , Han J , Chen A , Kyrpides N , Szeto E , Markowitz V , Ivanova N , Pagani I , Pati A , Pitluck S , Nolan M , Holliger C , Smidt H |
| Ref : Stand Genomic Sci , 8 :375 , 2013 |
| Abstract : |
| PubMedSearch : Kruse_2013_Stand.Genomic.Sci_8_375 |
| PubMedID: 24501624 |
| Gene_locus related to this paper: 9firm-w0ejt1 , 9firm-w0ekb3 |
| Title : Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)) - Anderson_2012_Stand.Genomic.Sci_6_31 |
| Author(s) : Anderson I , Tindall BJ , Rohde M , Lucas S , Han J , Lapidus A , Cheng JF , Goodwin L , Pitluck S , Peters L , Pati A , Mikhailova N , Pagani I , Teshima H , Han C , Tapia R , Land M , Woyke T , Klenk HP , Kyrpides N , Ivanova N |
| Ref : Stand Genomic Sci , 6 :31 , 2012 |
| Abstract : |
| PubMedSearch : Anderson_2012_Stand.Genomic.Sci_6_31 |
| PubMedID: 22675596 |
| Gene_locus related to this paper: halxs-f8dda6 |
| Title : Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614 - Coleman_2011_J.Bacteriol_193_3399 |
| Author(s) : Coleman NV , Wilson NL , Barry K , Brettin TS , Bruce DC , Copeland A , Dalin E , Detter JC , Del Rio TG , Goodwin LA , Hammon NM , Han S , Hauser LJ , Israni S , Kim E , Kyrpides N , Land ML , Lapidus A , Larimer FW , Lucas S , Pitluck S , Richardson P , Schmutz J , Tapia R , Thompson S , Tice HN , Spain JC , Gossett JG , Mattes TE |
| Ref : Journal of Bacteriology , 193 :3399 , 2011 |
| Abstract : |
| PubMedSearch : Coleman_2011_J.Bacteriol_193_3399 |
| PubMedID: 21551312 |
| Gene_locus related to this paper: nocsj-a1sil5 |
| Title : Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems - van Passel_2011_J.Bacteriol_193_2367 |
| Author(s) : van Passel MW , Kant R , Palva A , Copeland A , Lucas S , Lapidus A , Glavina Del Rio T , Pitluck S , Goltsman E , Clum A , Sun H , Schmutz J , Larimer FW , Land ML , Hauser L , Kyrpides N , Mikhailova N , Richardson PP , Janssen PH , de Vos WM , Smidt H |
| Ref : Journal of Bacteriology , 193 :2367 , 2011 |
| Abstract : |
| PubMedSearch : van Passel_2011_J.Bacteriol_193_2367 |
| PubMedID: 21398538 |
| Gene_locus related to this paper: opitp-b1zrm2 |
| Title : Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract - van Passel_2011_J.Bacteriol_193_2373 |
| Author(s) : van Passel MW , Kant R , Palva A , Lucas S , Copeland A , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Davenport KW , Sims D , Brettin TS , Detter JC , Han S , Larimer FW , Land ML , Hauser L , Kyrpides N , Ovchinnikova G , Richardson PP , de Vos WM , Smidt H , Zoetendal EG |
| Ref : Journal of Bacteriology , 193 :2373 , 2011 |
| Abstract : |
| PubMedSearch : van Passel_2011_J.Bacteriol_193_2373 |
| PubMedID: 21398537 |
| Gene_locus related to this paper: 9bact-d1n3e0 , 9bact-d1n3w1 , 9bact-d1n5u2 , 9bact-d1n6r9 , 9bact-d1n8l2 , 9bact-d1n8z8 , 9bact-d1n9n1 , 9bact-d1n9u1 , 9bact-d1n752 , 9bact-d1n881 , 9bact-d1naa7 , 9bact-d1nb62 , 9bact-d1nbd5 , 9bact-d1nbg1 , 9bact-d1nbh9 , 9bact-d1nbv9 |
| Title : The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea - Wagner-Dobler_2010_Isme.J_4_61 |
| Author(s) : Wagner-Dobler I , Ballhausen B , Berger M , Brinkhoff T , Buchholz I , Bunk B , Cypionka H , Daniel R , Drepper T , Gerdts G , Hahnke S , Han C , Jahn D , Kalhoefer D , Kiss H , Klenk HP , Kyrpides N , Liebl W , Liesegang H , Meincke L , Pati A , Petersen J , Piekarski T , Pommerenke C , Pradella S , Pukall R , Rabus R , Stackebrandt E , Thole S , Thompson L , Tielen P , Tomasch J , von Jan M , Wanphrut N , Wichels A , Zech H , Simon M |
| Ref : Isme J , 4 :61 , 2010 |
| Abstract : |
| PubMedSearch : Wagner-Dobler_2010_Isme.J_4_61 |
| PubMedID: 19741735 |
| Gene_locus related to this paper: dinsh-a8lqy2 , dinsh-a8luk0 , dinsh-a8lpz7 |
| Title : Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium - Young_2010_J.Bacteriol_192_841 |
| Author(s) : Young M , Artsatbanov V , Beller HR , Chandra G , Chater KF , Dover LG , Goh EB , Kahan T , Kaprelyants AS , Kyrpides N , Lapidus A , Lowry SR , Lykidis A , Mahillon J , Markowitz V , Mavromatis K , Mukamolova GV , Oren A , Rokem JS , Smith MC , Young DI , Greenblatt CL |
| Ref : Journal of Bacteriology , 192 :841 , 2010 |
| Abstract : |
| PubMedSearch : Young_2010_J.Bacteriol_192_841 |
| PubMedID: 19948807 |
| Gene_locus related to this paper: miclc-c5cbn3 |
| Title : Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419 - Reeve_2010_Stand.Genomic.Sci_2_77 |
| Author(s) : Reeve W , Chain P , O'Hara G , Ardley J , Nandesena K , Brau L , Tiwari R , Malfatti S , Kiss H , Lapidus A , Copeland A , Nolan M , Land M , Hauser L , Chang YJ , Ivanova N , Mavromatis K , Markowitz V , Kyrpides N , Gollagher M , Yates R , Dilworth M , Howieson J |
| Ref : Stand Genomic Sci , 2 :77 , 2010 |
| Abstract : |
| PubMedSearch : Reeve_2010_Stand.Genomic.Sci_2_77 |
| PubMedID: 21304680 |
| Title : The genomic basis of trophic strategy in marine bacteria - Lauro_2009_Proc.Natl.Acad.Sci.U.S.A_106_15527 |
| Author(s) : Lauro FM , McDougald D , Thomas T , Williams TJ , Egan S , Rice S , DeMaere MZ , Ting L , Ertan H , Johnson J , Ferriera S , Lapidus A , Anderson I , Kyrpides N , Munk AC , Detter C , Han CS , Brown MV , Robb FT , Kjelleberg S , Cavicchioli R |
| Ref : Proc Natl Acad Sci U S A , 106 :15527 , 2009 |
| Abstract : |
| PubMedSearch : Lauro_2009_Proc.Natl.Acad.Sci.U.S.A_106_15527 |
| PubMedID: 19805210 |
| Gene_locus related to this paper: phoas-q1zm99 , phoas-q1zpt1 , phoas-q1zwh7 , phoas-q1zx01 , phoas-q1zlj9 , sphal-q1grs6 |
| Title : The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota - Anderson_2009_BMC.Genomics_10_145 |
| Author(s) : Anderson IJ , Dharmarajan L , Rodriguez J , Hooper S , Porat I , Ulrich LE , Elkins JG , Mavromatis K , Sun H , Land M , Lapidus A , Lucas S , Barry K , Huber H , Zhulin IB , Whitman WB , Mukhopadhyay B , Woese C , Bristow J , Kyrpides N |
| Ref : BMC Genomics , 10 :145 , 2009 |
| Abstract : |
| PubMedSearch : Anderson_2009_BMC.Genomics_10_145 |
| PubMedID: 19341479 |
| Title : A korarchaeal genome reveals insights into the evolution of the Archaea - Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102 |
| Author(s) : Elkins JG , Podar M , Graham DE , Makarova KS , Wolf Y , Randau L , Hedlund BP , Brochier-Armanet C , Kunin V , Anderson I , Lapidus A , Goltsman E , Barry K , Koonin EV , Hugenholtz P , Kyrpides N , Wanner G , Richardson P , Keller M , Stetter KO |
| Ref : Proc Natl Acad Sci U S A , 105 :8102 , 2008 |
| Abstract : |
| PubMedSearch : Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102 |
| PubMedID: 18535141 |
| Title : Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction - Anderson_2008_J.Bacteriol_190_2957 |
| Author(s) : Anderson I , Rodriguez J , Susanti D , Porat I , Reich C , Ulrich LE , Elkins JG , Mavromatis K , Lykidis A , Kim E , Thompson LS , Nolan M , Land M , Copeland A , Lapidus A , Lucas S , Detter C , Zhulin IB , Olsen GJ , Whitman W , Mukhopadhyay B , Bristow J , Kyrpides N |
| Ref : Journal of Bacteriology , 190 :2957 , 2008 |
| Abstract : |
| PubMedSearch : Anderson_2008_J.Bacteriol_190_2957 |
| PubMedID: 18263724 |
| Gene_locus related to this paper: thepd-a1s004 |
| Title : Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX - Lykidis_2007_J.Bacteriol_189_2477 |
| Author(s) : Lykidis A , Mavromatis K , Ivanova N , Anderson I , Land M , DiBartolo G , Martinez M , Lapidus A , Lucas S , Copeland A , Richardson P , Wilson DB , Kyrpides N |
| Ref : Journal of Bacteriology , 189 :2477 , 2007 |
| Abstract : |
| PubMedSearch : Lykidis_2007_J.Bacteriol_189_2477 |
| PubMedID: 17209016 |
| Gene_locus related to this paper: thefu-q6a0i3 , thefy-q47l17 , thefy-q47p38 , thefy-q47pm5 |
| Title : The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode - Foster_2005_PLoS.Biol_3_e121 |
| Author(s) : Foster J , Ganatra M , Kamal I , Ware J , Makarova K , Ivanova N , Bhattacharyya A , Kapatral V , Kumar S , Posfai J , Vincze T , Ingram J , Moran L , Lapidus A , Omelchenko M , Kyrpides N , Ghedin E , Wang S , Goltsman E , Joukov V , Ostrovskaya O , Tsukerman K , Mazur M , Comb D , Koonin E , Slatko B |
| Ref : PLoS Biol , 3 :e121 , 2005 |
| Abstract : |
| PubMedSearch : Foster_2005_PLoS.Biol_3_e121 |
| PubMedID: 15780005 |
| Gene_locus related to this paper: woltr-q5gs90 , woltr-q5gtr0 |
| Title : Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586 - Kapatral_2002_J.Bacteriol_184_2005 |
| Author(s) : Kapatral V , Anderson I , Ivanova N , Reznik G , Los T , Lykidis A , Bhattacharyya A , Bartman A , Gardner W , Grechkin G , Zhu L , Vasieva O , Chu L , Kogan Y , Chaga O , Goltsman E , Bernal A , Larsen N , D'Souza M , Walunas T , Pusch G , Haselkorn R , Fonstein M , Kyrpides N , Overbeek R |
| Ref : Journal of Bacteriology , 184 :2005 , 2002 |
| Abstract : |
| PubMedSearch : Kapatral_2002_J.Bacteriol_184_2005 |
| PubMedID: 11889109 |
| Gene_locus related to this paper: fusnn-FN0616 , fusnn-FN0752 , fusnu-FN0280 , fusnu-FN0484 , fusnu-FN0852 , fusnu-FN1062 , fusnu-FN1128 , fusnu-FN1345 , fusnv-q7p2e5 , fusnv-q7p338 |
| Title : The genome sequence of the facultative intracellular pathogen Brucella melitensis - DelVecchio_2002_Proc.Natl.Acad.Sci.U.S.A_99_443 |
| Author(s) : DelVecchio VG , Kapatral V , Redkar RJ , Patra G , Mujer C , Los T , Ivanova N , Anderson I , Bhattacharyya A , Lykidis A , Reznik G , Jablonski L , Larsen N , D'Souza M , Bernal A , Mazur M , Goltsman E , Selkov E , Elzer PH , Hagius S , O'Callaghan D , Letesson JJ , Haselkorn R , Kyrpides N , Overbeek R |
| Ref : Proc Natl Acad Sci U S A , 99 :443 , 2002 |
| Abstract : |
| PubMedSearch : DelVecchio_2002_Proc.Natl.Acad.Sci.U.S.A_99_443 |
| PubMedID: 11756688 |
| Gene_locus related to this paper: brume-BMEI0552 , brume-BMEI0733 , brume-BMEI1044 , brume-BMEI1119 , brume-BMEI1365 , brume-BMEI1594 , brume-BMEI1608 , brume-BMEI1822 , brume-BMEI1884 , brume-BMEI1951 , brume-BMEI2011 , brume-BMEII0047 , brume-BMEII0306 , brume-BMEII0681 , brume-BMEII0989 , brume-dhE2 , brume-PCAD , brusu-BR0288 , brusu-BR1291 , brusu-BR1327 |