Kyrpides N

References (26)

Title : Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds - Hwang_2016_Genome.Announc_4_e01226
Author(s) : Hwang C , Copeland A , Lucas S , Lapidus A , Barry K , Detter JC , Glavina Del Rio T , Hammon N , Israni S , Dalin E , Tice H , Pitluck S , Chertkov O , Brettin T , Bruce D , Han C , Schmutz J , Larimer F , Land ML , Hauser L , Kyrpides N , Mikhailova N , Ye Q , Zhou J , Richardson P , Fields MW
Ref : Genome Announc , 4 : , 2016
Abstract :
PubMedSearch : Hwang_2016_Genome.Announc_4_e01226
PubMedID: 27811105
Gene_locus related to this paper: alkmq-a6tu78

Title : Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium - Gutierrez_2015_Genome.Announc_3_e00793
Author(s) : Gutierrez T , Whitman WB , Huntemann M , Copeland A , Chen A , Kyrpides N , Markowitz V , Pillay M , Ivanova N , Mikhailova N , Ovchinnikova G , Andersen E , Pati A , Stamatis D , Reddy TB , Ngan CY , Chovatia M , Daum C , Shapiro N , Cantor MN , Woyke T
Ref : Genome Announc , 3 : , 2015
Abstract :
PubMedSearch : Gutierrez_2015_Genome.Announc_3_e00793
PubMedID: 26184945

Title : Complete Genome Sequence of Methanosphaerula palustris E1-9CT, a Hydrogenotrophic Methanogen Isolated from a Minerotrophic Fen Peatland - Cadillo-Quiroz_2015_Genome.Announc_3_e01280
Author(s) : Cadillo-Quiroz H , Browne P , Kyrpides N , Woyke T , Goodwin L , Detter C , Yavitt JB , Zinder SH
Ref : Genome Announc , 3 :e01280 , 2015
Abstract :
PubMedSearch : Cadillo-Quiroz_2015_Genome.Announc_3_e01280
PubMedID: 26543115
Gene_locus related to this paper: metpe-metxa

Title : Complete Genome sequence of Burkholderia phymatum STM815(T), a broad host range and efficient nitrogen-fixing symbiont of Mimosa species - Moulin_2014_Stand.Genomic.Sci_9_763
Author(s) : Moulin L , Klonowska A , Caroline B , Booth K , Vriezen JA , Melkonian R , James EK , Young JP , Bena G , Hauser L , Land M , Kyrpides N , Bruce D , Chain P , Copeland A , Pitluck S , Woyke T , Lizotte-Waniewski M , Bristow J , Riley M
Ref : Stand Genomic Sci , 9 :763 , 2014
Abstract :
PubMedSearch : Moulin_2014_Stand.Genomic.Sci_9_763
PubMedID: 25197461
Gene_locus related to this paper: parp8-b2jpd8 , parp8-b2jvh3

Title : Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis - Ghodhbane-Gtari_2013_Genome.Announc_1_e0008513
Author(s) : Ghodhbane-Gtari F , Beauchemin N , Bruce D , Chain P , Chen A , Walston Davenport K , Deshpande S , Detter C , Furnholm T , Goodwin L , Gtari M , Han C , Han J , Huntemann M , Ivanova N , Kyrpides N , Land ML , Markowitz V , Mavrommatis K , Nolan M , Nouioui I , Pagani I , Pati A , Pitluck S , Santos CL , Sen A , Sur S , Szeto E , Tavares F , Teshima H , Thakur S , Wall L , Woyke T , Tisa LS
Ref : Genome Announc , 1 :e0008513 , 2013
Abstract :
PubMedSearch : Ghodhbane-Gtari_2013_Genome.Announc_1_e0008513
PubMedID: 23516212
Gene_locus related to this paper: 9acto-g6hh93

Title : Complete genome sequence of Dehalobacter restrictus PER-K23(T.) - Kruse_2013_Stand.Genomic.Sci_8_375
Author(s) : Kruse T , Maillard J , Goodwin L , Woyke T , Teshima H , Bruce D , Detter C , Tapia R , Han C , Huntemann M , Wei CL , Han J , Chen A , Kyrpides N , Szeto E , Markowitz V , Ivanova N , Pagani I , Pati A , Pitluck S , Nolan M , Holliger C , Smidt H
Ref : Stand Genomic Sci , 8 :375 , 2013
Abstract :
PubMedSearch : Kruse_2013_Stand.Genomic.Sci_8_375
PubMedID: 24501624
Gene_locus related to this paper: 9firm-w0ejt1 , 9firm-w0ekb3

Title : Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin - Murugapiran_2013_Genome.Announc_1_e00106
Author(s) : Murugapiran SK , Huntemann M , Wei CL , Han J , Detter JC , Han CS , Erkkila TH , Teshima H , Chen A , Kyrpides N , Mavrommatis K , Markowitz V , Szeto E , Ivanova N , Pagani I , Lam J , McDonald AI , Dodsworth JA , Pati A , Goodwin L , Peters L , Pitluck S , Woyke T , Hedlund BP
Ref : Genome Announc , 1 : , 2013
Abstract :
PubMedSearch : Murugapiran_2013_Genome.Announc_1_e00106
PubMedID: 23405355
Gene_locus related to this paper: thet2-q72hz1 , thet2-q72j75 , theth-TTC1787 , theos-k7r7w9 , theos-k7r725 , theth-h9zpz9 , theos-k7riw9 , theos-k7qw42 , theos-k7r3i4

Title : Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida - Sen_2013_Genome.Announc_1_e0010313
Author(s) : Sen A , Beauchemin N , Bruce D , Chain P , Chen A , Walston Davenport K , Deshpande S , Detter C , Furnholm T , Ghodbhane-Gtari F , Goodwin L , Gtari M , Han C , Han J , Huntemann M , Ivanova N , Kyrpides N , Land ML , Markowitz V , Mavrommatis K , Nolan M , Nouioui I , Pagani I , Pati A , Pitluck S , Santos CL , Sur S , Szeto E , Tavares F , Teshima H , Thakur S , Wall L , Woyke T , Wishart J , Tisa LS
Ref : Genome Announc , 1 :e0010313 , 2013
Abstract :
PubMedSearch : Sen_2013_Genome.Announc_1_e0010313
PubMedID: 23516220
Gene_locus related to this paper: 9acto-i8qvq8 , 9actn-i8qfl2

Title : Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)) - Anderson_2012_Stand.Genomic.Sci_6_31
Author(s) : Anderson I , Tindall BJ , Rohde M , Lucas S , Han J , Lapidus A , Cheng JF , Goodwin L , Pitluck S , Peters L , Pati A , Mikhailova N , Pagani I , Teshima H , Han C , Tapia R , Land M , Woyke T , Klenk HP , Kyrpides N , Ivanova N
Ref : Stand Genomic Sci , 6 :31 , 2012
Abstract :
PubMedSearch : Anderson_2012_Stand.Genomic.Sci_6_31
PubMedID: 22675596
Gene_locus related to this paper: halxs-f8dda6

Title : Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems - van Passel_2011_J.Bacteriol_193_2367
Author(s) : van Passel MW , Kant R , Palva A , Copeland A , Lucas S , Lapidus A , Glavina Del Rio T , Pitluck S , Goltsman E , Clum A , Sun H , Schmutz J , Larimer FW , Land ML , Hauser L , Kyrpides N , Mikhailova N , Richardson PP , Janssen PH , de Vos WM , Smidt H
Ref : Journal of Bacteriology , 193 :2367 , 2011
Abstract :
PubMedSearch : van Passel_2011_J.Bacteriol_193_2367
PubMedID: 21398538
Gene_locus related to this paper: opitp-b1zrm2

Title : Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract - van Passel_2011_J.Bacteriol_193_2373
Author(s) : van Passel MW , Kant R , Palva A , Lucas S , Copeland A , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Davenport KW , Sims D , Brettin TS , Detter JC , Han S , Larimer FW , Land ML , Hauser L , Kyrpides N , Ovchinnikova G , Richardson PP , de Vos WM , Smidt H , Zoetendal EG
Ref : Journal of Bacteriology , 193 :2373 , 2011
Abstract :
PubMedSearch : van Passel_2011_J.Bacteriol_193_2373
PubMedID: 21398537
Gene_locus related to this paper: 9bact-d1n3e0 , 9bact-d1n3w1 , 9bact-d1n5u2 , 9bact-d1n6r9 , 9bact-d1n8l2 , 9bact-d1n8z8 , 9bact-d1n9n1 , 9bact-d1n9u1 , 9bact-d1n752 , 9bact-d1n881 , 9bact-d1naa7 , 9bact-d1nb62 , 9bact-d1nbd5 , 9bact-d1nbg1 , 9bact-d1nbh9 , 9bact-d1nbv9

Title : Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614 - Coleman_2011_J.Bacteriol_193_3399
Author(s) : Coleman NV , Wilson NL , Barry K , Brettin TS , Bruce DC , Copeland A , Dalin E , Detter JC , Del Rio TG , Goodwin LA , Hammon NM , Han S , Hauser LJ , Israni S , Kim E , Kyrpides N , Land ML , Lapidus A , Larimer FW , Lucas S , Pitluck S , Richardson P , Schmutz J , Tapia R , Thompson S , Tice HN , Spain JC , Gossett JG , Mattes TE
Ref : Journal of Bacteriology , 193 :3399 , 2011
Abstract :
PubMedSearch : Coleman_2011_J.Bacteriol_193_3399
PubMedID: 21551312
Gene_locus related to this paper: nocsj-a1sil5

Title : Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium - Young_2010_J.Bacteriol_192_841
Author(s) : Young M , Artsatbanov V , Beller HR , Chandra G , Chater KF , Dover LG , Goh EB , Kahan T , Kaprelyants AS , Kyrpides N , Lapidus A , Lowry SR , Lykidis A , Mahillon J , Markowitz V , Mavromatis K , Mukamolova GV , Oren A , Rokem JS , Smith MC , Young DI , Greenblatt CL
Ref : Journal of Bacteriology , 192 :841 , 2010
Abstract :
PubMedSearch : Young_2010_J.Bacteriol_192_841
PubMedID: 19948807
Gene_locus related to this paper: miclc-c5cbn3

Title : A catalog of reference genomes from the human microbiome - Nelson_2010_Science_328_994
Author(s) : Nelson KE , Weinstock GM , Highlander SK , Worley KC , Creasy HH , Wortman JR , Rusch DB , Mitreva M , Sodergren E , Chinwalla AT , Feldgarden M , Gevers D , Haas BJ , Madupu R , Ward DV , Birren BW , Gibbs RA , Methe B , Petrosino JF , Strausberg RL , Sutton GG , White OR , Wilson RK , Durkin S , Giglio MG , Gujja S , Howarth C , Kodira CD , Kyrpides N , Mehta T , Muzny DM , Pearson M , Pepin K , Pati A , Qin X , Yandava C , Zeng Q , Zhang L , Berlin AM , Chen L , Hepburn TA , Johnson J , McCorrison J , Miller J , Minx P , Nusbaum C , Russ C , Sykes SM , Tomlinson CM , Young S , Warren WC , Badger J , Crabtree J , Markowitz VM , Orvis J , Cree A , Ferriera S , Fulton LL , Fulton RS , Gillis M , Hemphill LD , Joshi V , Kovar C , Torralba M , Wetterstrand KA , Abouellleil A , Wollam AM , Buhay CJ , Ding Y , Dugan S , Fitzgerald MG , Holder M , Hostetler J , Clifton SW , Allen-Vercoe E , Earl AM , Farmer CN , Liolios K , Surette MG , Xu Q , Pohl C , Wilczek-Boney K , Zhu D
Ref : Science , 328 :994 , 2010
Abstract :
PubMedSearch : Nelson_2010_Science_328_994
PubMedID: 20489017
Gene_locus related to this paper: strp2-q04l35 , strpn-AXE1 , strpn-pepx

Title : Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers - Reeve_2010_Stand.Genomic.Sci_2_347
Author(s) : Reeve W , O'Hara G , Chain P , Ardley J , Brau L , Nandesena K , Tiwari R , Copeland A , Nolan M , Han C , Brettin T , Land M , Ovchinikova G , Ivanova N , Mavromatis K , Markowitz V , Kyrpides N , Melino V , Denton M , Yates R , Howieson J
Ref : Stand Genomic Sci , 2 :347 , 2010
Abstract :
PubMedSearch : Reeve_2010_Stand.Genomic.Sci_2_347
PubMedID: 21304718
Gene_locus related to this paper: rhiec-q2k5l4 , rhiec-q2k7y0 , rhiec-q2k107 , rhiec-q2k741 , rhiec-q2kav5 , rhiec-q2ke86 , rhil3-q1m3b7 , rhil3-q1m3u0 , rhil3-q1m5k0 , rhil3-q1m6u8 , rhil3-q1m7i2 , rhil3-q1m7n3 , rhil3-q1m917 , rhil3-q1m919 , rhil3-q1mbv4 , rhil3-q1mc48 , rhil3-q1mdd8 , rhil3-q1mee4 , rhil3-q1mfb0 , rhil3-q1mfp5 , rhil3-q1mhz8 , rhil3-q1mig2 , rhil3-q1mj26 , rhil3-q1mkk8 , rhil3-q1mlj7 , rhil3-q1mm33 , rhils-c6as95 , rhils-c6avm8 , rhils-c6avn9 , rhils-c6aw01 , rhils-c6axl5 , rhils-c6ayn2 , rhils-c6b1w3 , rhils-c6b1w7 , rhils-c6b3f3 , rhils-c6b4c5 , rhils-c6b5g1 , rhils-c6b7c8 , rhils-c6b7j6 , rhils-c6b8d5 , rhils-c6b9d4 , rhils-c6b403 , rhils-c6b716 , rhilw-b5zrm4 , rhilw-b5zs97 , rhilw-b6a1y2 , rhils-c6b7m4 , rhils-c6ba59

Title : The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea - Wagner-Dobler_2010_Isme.J_4_61
Author(s) : Wagner-Dobler I , Ballhausen B , Berger M , Brinkhoff T , Buchholz I , Bunk B , Cypionka H , Daniel R , Drepper T , Gerdts G , Hahnke S , Han C , Jahn D , Kalhoefer D , Kiss H , Klenk HP , Kyrpides N , Liebl W , Liesegang H , Meincke L , Pati A , Petersen J , Piekarski T , Pommerenke C , Pradella S , Pukall R , Rabus R , Stackebrandt E , Thole S , Thompson L , Tielen P , Tomasch J , von Jan M , Wanphrut N , Wichels A , Zech H , Simon M
Ref : Isme J , 4 :61 , 2010
Abstract :
PubMedSearch : Wagner-Dobler_2010_Isme.J_4_61
PubMedID: 19741735
Gene_locus related to this paper: dinsh-a8lqy2 , dinsh-a8luk0 , dinsh-a8lpz7

Title : Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419 - Reeve_2010_Stand.Genomic.Sci_2_77
Author(s) : Reeve W , Chain P , O'Hara G , Ardley J , Nandesena K , Brau L , Tiwari R , Malfatti S , Kiss H , Lapidus A , Copeland A , Nolan M , Land M , Hauser L , Chang YJ , Ivanova N , Mavromatis K , Markowitz V , Kyrpides N , Gollagher M , Yates R , Dilworth M , Howieson J
Ref : Stand Genomic Sci , 2 :77 , 2010
Abstract :
PubMedSearch : Reeve_2010_Stand.Genomic.Sci_2_77
PubMedID: 21304680

Title : The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota - Anderson_2009_BMC.Genomics_10_145
Author(s) : Anderson IJ , Dharmarajan L , Rodriguez J , Hooper S , Porat I , Ulrich LE , Elkins JG , Mavromatis K , Sun H , Land M , Lapidus A , Lucas S , Barry K , Huber H , Zhulin IB , Whitman WB , Mukhopadhyay B , Woese C , Bristow J , Kyrpides N
Ref : BMC Genomics , 10 :145 , 2009
Abstract :
PubMedSearch : Anderson_2009_BMC.Genomics_10_145
PubMedID: 19341479

Title : The genomic basis of trophic strategy in marine bacteria - Lauro_2009_Proc.Natl.Acad.Sci.U.S.A_106_15527
Author(s) : Lauro FM , McDougald D , Thomas T , Williams TJ , Egan S , Rice S , DeMaere MZ , Ting L , Ertan H , Johnson J , Ferriera S , Lapidus A , Anderson I , Kyrpides N , Munk AC , Detter C , Han CS , Brown MV , Robb FT , Kjelleberg S , Cavicchioli R
Ref : Proc Natl Acad Sci U S A , 106 :15527 , 2009
Abstract :
PubMedSearch : Lauro_2009_Proc.Natl.Acad.Sci.U.S.A_106_15527
PubMedID: 19805210
Gene_locus related to this paper: phoas-q1zm99 , phoas-q1zpt1 , phoas-q1zwh7 , phoas-q1zx01 , phoas-q1zlj9 , sphal-q1grs6

Title : A korarchaeal genome reveals insights into the evolution of the Archaea - Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102
Author(s) : Elkins JG , Podar M , Graham DE , Makarova KS , Wolf Y , Randau L , Hedlund BP , Brochier-Armanet C , Kunin V , Anderson I , Lapidus A , Goltsman E , Barry K , Koonin EV , Hugenholtz P , Kyrpides N , Wanner G , Richardson P , Keller M , Stetter KO
Ref : Proc Natl Acad Sci U S A , 105 :8102 , 2008
Abstract :
PubMedSearch : Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102
PubMedID: 18535141

Title : Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction - Anderson_2008_J.Bacteriol_190_2957
Author(s) : Anderson I , Rodriguez J , Susanti D , Porat I , Reich C , Ulrich LE , Elkins JG , Mavromatis K , Lykidis A , Kim E , Thompson LS , Nolan M , Land M , Copeland A , Lapidus A , Lucas S , Detter C , Zhulin IB , Olsen GJ , Whitman W , Mukhopadhyay B , Bristow J , Kyrpides N
Ref : Journal of Bacteriology , 190 :2957 , 2008
Abstract :
PubMedSearch : Anderson_2008_J.Bacteriol_190_2957
PubMedID: 18263724
Gene_locus related to this paper: thepd-a1s004

Title : Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX - Lykidis_2007_J.Bacteriol_189_2477
Author(s) : Lykidis A , Mavromatis K , Ivanova N , Anderson I , Land M , DiBartolo G , Martinez M , Lapidus A , Lucas S , Copeland A , Richardson P , Wilson DB , Kyrpides N
Ref : Journal of Bacteriology , 189 :2477 , 2007
Abstract :
PubMedSearch : Lykidis_2007_J.Bacteriol_189_2477
PubMedID: 17209016
Gene_locus related to this paper: thefu-q6a0i3 , thefy-q47l17 , thefy-q47p38 , thefy-q47pm5

Title : The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode - Foster_2005_PLoS.Biol_3_e121
Author(s) : Foster J , Ganatra M , Kamal I , Ware J , Makarova K , Ivanova N , Bhattacharyya A , Kapatral V , Kumar S , Posfai J , Vincze T , Ingram J , Moran L , Lapidus A , Omelchenko M , Kyrpides N , Ghedin E , Wang S , Goltsman E , Joukov V , Ostrovskaya O , Tsukerman K , Mazur M , Comb D , Koonin E , Slatko B
Ref : PLoS Biol , 3 :e121 , 2005
Abstract :
PubMedSearch : Foster_2005_PLoS.Biol_3_e121
PubMedID: 15780005
Gene_locus related to this paper: woltr-q5gs90 , woltr-q5gtr0

Title : Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586 - Kapatral_2002_J.Bacteriol_184_2005
Author(s) : Kapatral V , Anderson I , Ivanova N , Reznik G , Los T , Lykidis A , Bhattacharyya A , Bartman A , Gardner W , Grechkin G , Zhu L , Vasieva O , Chu L , Kogan Y , Chaga O , Goltsman E , Bernal A , Larsen N , D'Souza M , Walunas T , Pusch G , Haselkorn R , Fonstein M , Kyrpides N , Overbeek R
Ref : Journal of Bacteriology , 184 :2005 , 2002
Abstract :
PubMedSearch : Kapatral_2002_J.Bacteriol_184_2005
PubMedID: 11889109
Gene_locus related to this paper: fusnn-FN0616 , fusnn-FN0752 , fusnu-FN0280 , fusnu-FN0484 , fusnu-FN0852 , fusnu-FN1062 , fusnu-FN1128 , fusnu-FN1345 , fusnv-q7p2e5 , fusnv-q7p338

Title : The genome sequence of the facultative intracellular pathogen Brucella melitensis - DelVecchio_2002_Proc.Natl.Acad.Sci.U.S.A_99_443
Author(s) : DelVecchio VG , Kapatral V , Redkar RJ , Patra G , Mujer C , Los T , Ivanova N , Anderson I , Bhattacharyya A , Lykidis A , Reznik G , Jablonski L , Larsen N , D'Souza M , Bernal A , Mazur M , Goltsman E , Selkov E , Elzer PH , Hagius S , O'Callaghan D , Letesson JJ , Haselkorn R , Kyrpides N , Overbeek R
Ref : Proc Natl Acad Sci U S A , 99 :443 , 2002
Abstract :
PubMedSearch : DelVecchio_2002_Proc.Natl.Acad.Sci.U.S.A_99_443
PubMedID: 11756688
Gene_locus related to this paper: brume-BMEI0552 , brume-BMEI0733 , brume-BMEI1044 , brume-BMEI1119 , brume-BMEI1365 , brume-BMEI1594 , brume-BMEI1608 , brume-BMEI1822 , brume-BMEI1884 , brume-BMEI1951 , brume-BMEI2011 , brume-BMEII0047 , brume-BMEII0306 , brume-BMEII0681 , brume-BMEII0989 , brume-dhE2 , brume-PCAD , brusu-BR0288 , brusu-BR1291 , brusu-BR1327