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Nishiyama T

References (15)

Title : An ancestral function of strigolactones as symbiotic rhizosphere signals - Kodama_2022_Nat.Commun_13_3974
Author(s) : Kodama K , Rich MK , Yoda A , Shimazaki S , Xie X , Akiyama K , Mizuno Y , Komatsu A , Luo Y , Suzuki H , Kameoka H , Libourel C , Keller J , Sakakibara K , Nishiyama T , Nakagawa T , Mashiguchi K , Uchida K , Yoneyama K , Tanaka Y , Yamaguchi S , Shimamura M , Delaux PM , Nomura T , Kyozuka J
Ref : Nat Commun , 13 :3974 , 2022
Abstract :
PubMedSearch : Kodama_2022_Nat.Commun_13_3974
PubMedID: 35803942

Title : The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization - Nishiyama_2018_Cell_174_448
Author(s) : Nishiyama T , Sakayama H , de Vries J , Buschmann H , Saint-Marcoux D , Ullrich KK , Haas FB , Vanderstraeten L , Becker D , Lang D , Vosolsobe S , Rombauts S , Wilhelmsson PKI , Janitza P , Kern R , Heyl A , Rumpler F , Villalobos L , Clay JM , Skokan R , Toyoda A , Suzuki Y , Kagoshima H , Schijlen E , Tajeshwar N , Catarino B , Hetherington AJ , Saltykova A , Bonnot C , Breuninger H , Symeonidi A , Radhakrishnan GV , Van Nieuwerburgh F , Deforce D , Chang C , Karol KG , Hedrich R , Ulvskov P , Glockner G , Delwiche CF , Petrasek J , Van de Peer Y , Friml J , Beilby M , Dolan L , Kohara Y , Sugano S , Fujiyama A , Delaux PM , Quint M , Theissen G , Hagemann M , Harholt J , Dunand C , Zachgo S , Langdale J , Maumus F , Van Der Straeten D , Gould SB , Rensing SA
Ref : Cell , 174 :448 , 2018
Abstract :
PubMedSearch : Nishiyama_2018_Cell_174_448
PubMedID: 30007417
Gene_locus related to this paper: chabu-a0a388kgf1 , chabu-a0a388jwy2

Title : Re-characterization of mono-2-ethylhexyl phthalate hydrolase belonging to the serine hydrolase family - Iwata_2016_J.Biosci.Bioeng_122_140
Author(s) : Iwata M , Imaoka T , Nishiyama T , Fujii T
Ref : J Biosci Bioeng , 122 :140 , 2016
Abstract :
PubMedSearch : Iwata_2016_J.Biosci.Bioeng_122_140
PubMedID: 26868518
Gene_locus related to this paper: 9noca-a0a0u5adh4

Title : Algal ancestor of land plants was preadapted for symbiosis - Delaux_2015_Proc.Natl.Acad.Sci.U.S.A_112_13390
Author(s) : Delaux PM , Radhakrishnan GV , Jayaraman D , Cheema J , Malbreil M , Volkening JD , Sekimoto H , Nishiyama T , Melkonian M , Pokorny L , Rothfels CJ , Sederoff HW , Stevenson DW , Surek B , Zhang Y , Sussman MR , Dunand C , Morris RJ , Roux C , Wong GK , Oldroyd GE , Ane JM
Ref : Proc Natl Acad Sci U S A , 112 :13390 , 2015
Abstract :
PubMedSearch : Delaux_2015_Proc.Natl.Acad.Sci.U.S.A_112_13390
PubMedID: 26438870

Title : Whole-Genome Sequence of Burkholderia sp. Strain RPE67, a Bacterial Gut Symbiont of the Bean Bug Riptortus pedestris - Takeshita_2014_Genome.Announc_2_e00556
Author(s) : Takeshita K , Shibata TF , Nikoh N , Nishiyama T , Hasebe M , Fukatsu T , Shigenobu S , Kikuchi Y
Ref : Genome Announc , 2 : , 2014
Abstract :
PubMedSearch : Takeshita_2014_Genome.Announc_2_e00556
PubMedID: 24948758
Gene_locus related to this paper: 9burk-a0a069nn99 , 9burk-a0a060pb06 , 9burk-a0a060pes1 , 9burk-g8m682

Title : Complete Genome Sequence of Burkholderia sp. Strain RPE64, Bacterial Symbiont of the Bean Bug Riptortus pedestris - Shibata_2013_Genome.Announc_1_e00441
Author(s) : Shibata TF , Maeda T , Nikoh N , Yamaguchi K , Oshima K , Hattori M , Nishiyama T , Hasebe M , Fukatsu T , Kikuchi Y , Shigenobu S
Ref : Genome Announc , 1 :e00441 , 2013
Abstract :
PubMedSearch : Shibata_2013_Genome.Announc_1_e00441
PubMedID: 23833137
Gene_locus related to this paper: 9burk-r4wy41 , 9burk-a0a069nn99 , 9burk-r4wtx8 , 9burk-r4wsg0 , 9burk-r4x084 , 9burk-r4wsp2

Title : Anammox organism KSU-1 expresses a NirK-type copper-containing nitrite reductase instead of a NirS-type with cytochrome cd1 - Hira_2012_FEBS.Lett_586_1658
Author(s) : Hira D , Toh H , Migita CT , Okubo H , Nishiyama T , Hattori M , Furukawa K , Fujii T
Ref : FEBS Letters , 586 :1658 , 2012
Abstract :
PubMedSearch : Hira_2012_FEBS.Lett_586_1658
PubMedID: 22673575
Gene_locus related to this paper: 9plan-i3iq59 , 9plan-i3ile2 , 9bact-i3ijt8

Title : The Selaginella genome identifies genetic changes associated with the evolution of vascular plants - Banks_2011_Science_332_960
Author(s) : Banks JA , Nishiyama T , Hasebe M , Bowman JL , Gribskov M , dePamphilis C , Albert VA , Aono N , Aoyama T , Ambrose BA , Ashton NW , Axtell MJ , Barker E , Barker MS , Bennetzen JL , Bonawitz ND , Chapple C , Cheng C , Correa LG , Dacre M , DeBarry J , Dreyer I , Elias M , Engstrom EM , Estelle M , Feng L , Finet C , Floyd SK , Frommer WB , Fujita T , Gramzow L , Gutensohn M , Harholt J , Hattori M , Heyl A , Hirai T , Hiwatashi Y , Ishikawa M , Iwata M , Karol KG , Koehler B , Kolukisaoglu U , Kubo M , Kurata T , Lalonde S , Li K , Li Y , Litt A , Lyons E , Manning G , Maruyama T , Michael TP , Mikami K , Miyazaki S , Morinaga S , Murata T , Mueller-Roeber B , Nelson DR , Obara M , Oguri Y , Olmstead RG , Onodera N , Petersen BL , Pils B , Prigge M , Rensing SA , Riano-Pachon DM , Roberts AW , Sato Y , Scheller HV , Schulz B , Schulz C , Shakirov EV , Shibagaki N , Shinohara N , Shippen DE , Sorensen I , Sotooka R , Sugimoto N , Sugita M , Sumikawa N , Tanurdzic M , Theissen G , Ulvskov P , Wakazuki S , Weng JK , Willats WW , Wipf D , Wolf PG , Yang L , Zimmer AD , Zhu Q , Mitros T , Hellsten U , Loque D , Otillar R , Salamov A , Schmutz J , Shapiro H , Lindquist E , Lucas S , Rokhsar D , Grigoriev IV
Ref : Science , 332 :960 , 2011
Abstract :
PubMedSearch : Banks_2011_Science_332_960
PubMedID: 21551031
Gene_locus related to this paper: selml-d8qua5 , selml-d8qva1 , selml-d8qyh7 , selml-d8qza0 , selml-d8r5d4 , selml-d8r6d4 , selml-d8r504 , selml-d8r506 , selml-d8rbi1 , selml-d8rbs1 , selml-d8rck8 , selml-d8rf38 , selml-d8rkl6 , selml-d8rpr1 , selml-d8rpy0 , selml-d8ru47 , selml-d8ry54 , selml-d8rzp6 , selml-d8rzy7 , selml-d8s0c9 , selml-d8s0u3 , selml-d8s2t1 , selml-d8s3z8 , selml-d8s401 , selml-d8sba6 , selml-d8sch9 , selml-d8spq2 , selml-d8sq37 , selml-d8ssx7 , selml-d8swp2 , selml-d8t7a3 , selml-d8t8v4 , selml-d8taz4 , selml-d8tdq6 , selml-d8rai8 , selml-d8qt54 , selml-d8r2d8 , selml-d8rmd3 , selml-d8rra9 , selml-d8slg4 , selml-d8swp0 , selml-d8s7i0 , selml-d8qz37 , selml-d8sz00 , selml-d8s776 , selml-d8qw15 , selml-d8ska7 , selml-d8t0c4 , selml-d8r194 , selml-d8s5m8 , selml-d8s7r2 , selml-d8ta80 , selml-d8ru55

Title : The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants - Rensing_2008_Science_319_64
Author(s) : Rensing SA , Lang D , Zimmer AD , Terry A , Salamov A , Shapiro H , Nishiyama T , Perroud PF , Lindquist EA , Kamisugi Y , Tanahashi T , Sakakibara K , Fujita T , Oishi K , Shin IT , Kuroki Y , Toyoda A , Suzuki Y , Hashimoto S , Yamaguchi K , Sugano S , Kohara Y , Fujiyama A , Anterola A , Aoki S , Ashton N , Barbazuk WB , Barker E , Bennetzen JL , Blankenship R , Cho SH , Dutcher SK , Estelle M , Fawcett JA , Gundlach H , Hanada K , Heyl A , Hicks KA , Hughes J , Lohr M , Mayer K , Melkozernov A , Murata T , Nelson DR , Pils B , Prigge M , Reiss B , Renner T , Rombauts S , Rushton PJ , Sanderfoot A , Schween G , Shiu SH , Stueber K , Theodoulou FL , Tu H , Van de Peer Y , Verrier PJ , Waters E , Wood A , Yang L , Cove D , Cuming AC , Hasebe M , Lucas S , Mishler BD , Reski R , Grigoriev IV , Quatrano RS , Boore JL
Ref : Science , 319 :64 , 2008
Abstract :
PubMedSearch : Rensing_2008_Science_319_64
PubMedID: 18079367
Gene_locus related to this paper: phypa-a9rbi6 , phypa-a9rfh1 , phypa-a9rg19 , phypa-a9rgt9 , phypa-a9rhz9 , phypa-a9rkj1 , phypa-a9rns2 , phypa-a9rp52 , phypa-a9rq03 , phypa-a9ry17 , phypa-a9ry72 , phypa-a9s5n8 , phypa-a9s6w1 , phypa-a9s8c7 , phypa-a9s299 , phypa-a9san7 , phypa-a9sc75 , phypa-a9se75 , phypa-a9sg07 , phypa-a9skf7 , phypa-a9skr1 , phypa-a9skw1 , phypa-a9sl58 , phypa-a9slp7 , phypa-a9smq5 , phypa-a9sp13 , phypa-a9ssb0 , phypa-a9sse1 , phypa-a9ssf6 , phypa-a9st85 , phypa-a9sx74 , phypa-a9sy58 , phypa-a9syy4 , phypa-a9t0n4 , phypa-a9t0p4 , phypa-a9t1j2 , phypa-a9t5h1 , phypa-a9t7g6 , phypa-a9t8u8 , phypa-a9t9c9 , phypa-a9t9d9 , phypa-a0a7i4d2t7 , phypa-a9t498 , phypa-a9tbu4 , phypa-a9tc36 , phypa-a9tds0 , phypa-a9te64 , phypa-a9tfw2 , phypa-a9tin6 , phypa-a9tja4 , phypa-a9tmp3 , phypa-a9tmr4 , phypa-a9tql4 , phypa-a9tr83 , phypa-a9tsl1 , phypa-a9tsv6 , phypa-a9tu05 , phypa-a9tw81 , phypa-a9tyr8 , phypa-a9u0c9 , phypa-a9u0k3 , phypa-a9u0p4 , phypa-a9u2u7 , phypa-a9u3s0 , phypa-a9tfm7 , phypa-a9tfp6 , phypa-a9syg9 , phypa-a9tzk2 , phypa-a9tvg4 , phypa-a9t1y4 , phypa-a9tqt6 , phypa-a9st18 , phypa-a9tix9 , phypa-a0a2k1kfe3 , phypa-a9sqk3 , phypa-a0a2k1ie71 , phypa-a0a2k1kg29 , phypa-a0a2k1iji3

Title : A mono-2-ethylhexyl phthalate hydrolase from a Gordonia sp. that is able to dissimilate di-2-ethylhexyl phthalate - Nishioka_2006_Appl.Environ.Microbiol_72_2394
Author(s) : Nishioka T , Iwata M , Imaoka T , Mutoh M , Egashira Y , Nishiyama T , Shin T , Fujii T
Ref : Applied Environmental Microbiology , 72 :2394 , 2006
Abstract :
PubMedSearch : Nishioka_2006_Appl.Environ.Microbiol_72_2394
PubMedID: 16597936
Gene_locus related to this paper: 9noca-a0a0u5adh4 , 9acto-q2mhh5

Title : A repressor protein, PhaR, regulates polyhydroxyalkanoate (PHA) synthesis via its direct interaction with PHA - Maehara_2002_J.Bacteriol_184_3992
Author(s) : Maehara A , Taguchi S , Nishiyama T , Yamane T , Doi Y
Ref : Journal of Bacteriology , 184 :3992 , 2002
Abstract :
PubMedSearch : Maehara_2002_J.Bacteriol_184_3992
PubMedID: 12081972
Gene_locus related to this paper: parde-Q9WX79

Title : PhaR, a protein of unknown function conserved among short-chain-length polyhydroxyalkanoic acids producing bacteria, is a DNA-binding protein and represses Paracoccus denitrificans phaP expression in vitro - Maehara_2001_FEMS.Microbiol.Lett_200_9
Author(s) : Maehara A , Doi Y , Nishiyama T , Takagi Y , Ueda S , Nakano H , Yamane T
Ref : FEMS Microbiology Letters , 200 :9 , 2001
Abstract :
PubMedSearch : Maehara_2001_FEMS.Microbiol.Lett_200_9
PubMedID: 11410342
Gene_locus related to this paper: parde-PHAC , parde-Q9WX79

Title : Analysis of the genes encoding the antigen 85 complex and MPT51 from Mycobacterium avium - Ohara_1997_Infect.Immun_65_3680
Author(s) : Ohara N , Ohara-Wada N , Kitaura H , Nishiyama T , Matsumoto S , Yamada T
Ref : Infect Immun , 65 :3680 , 1997
Abstract :
PubMedSearch : Ohara_1997_Infect.Immun_65_3680
PubMedID: 9284137
Gene_locus related to this paper: mycav-a85a , mycav-a85c

Title : Characterization of the gene encoding the MPB51, one of the major secreted protein antigens of Mycobacterium bovis BCG, and identification of the secreted protein closely related to the fibronectin binding 85 complex - Ohara_1995_Scand.J.Immunol_41_433
Author(s) : Ohara N , Kitaura H , Hotokezaka H , Nishiyama T , Wada N , Matsumoto S , Matsuo T , Naito M , Yamada T
Ref : Scand J Immunol , 41 :433 , 1995
Abstract :
PubMedSearch : Ohara_1995_Scand.J.Immunol_41_433
PubMedID: 7725062
Gene_locus related to this paper: myctu-a85a , myctu-mpt51

Title : Molecular properties of muscarinic receptors -
Author(s) : Haga T , Haga K , Berstein G , Nishiyama T , Uchiyama H , Ichiyama A
Ref : Trends in Pharmacological Sciences , Suppl :12 , 1988
PubMedID: 3074530