| Title : Genomic adaptation of the Lactobacillus casei group - Toh_2013_PLoS.One_8_e75073 |
| Author(s) : Toh H , Oshima K , Nakano A , Takahata M , Murakami M , Takaki T , Nishiyama H , Igimi S , Hattori M , Morita H |
| Ref : PLoS ONE , 8 :e75073 , 2013 |
| Abstract : |
| PubMedSearch : Toh_2013_PLoS.One_8_e75073 |
| PubMedID: 24116025 |
| Gene_locus related to this paper: lacc3-q03b36 , laccb-b3wcx2 , lacrh-pepr , lacca-b5qt93 , lacca-k0n1x0 , lacpa-s2ter8 , lacpa-s2rz88 |
| Title : Complete Genome Sequence of a Thermophilic Hydrogenotrophic Methanogen, Methanothermobacter sp. Strain CaT2 - Kosaka_2013_Genome.Announc_1_ |
| Author(s) : Kosaka T , Toh H , Toyoda A |
| Ref : Genome Announc , 1 : , 2013 |
| Abstract : |
| PubMedSearch : Kosaka_2013_Genome.Announc_1_ |
| PubMedID: 23990577 |
| Gene_locus related to this paper: 9eury-t2gj08 |
| Title : Genomic analysis by deep sequencing of the probiotic Lactobacillus brevis KB290 harboring nine plasmids reveals genomic stability - Fukao_2013_PLoS.One_8_e60521 |
| Author(s) : Fukao M , Oshima K , Morita H , Toh H , Suda W , Kim SW , Suzuki S , Yakabe T , Hattori M , Yajima N |
| Ref : PLoS ONE , 8 :e60521 , 2013 |
| Abstract : |
| PubMedSearch : Fukao_2013_PLoS.One_8_e60521 |
| PubMedID: 23544154 |
| Gene_locus related to this paper: lacba-q03sl1 |
| Title : Complete genome sequence of Bacillus cereus NC7401, which produces high levels of the emetic toxin cereulide - Takeno_2012_J.Bacteriol_194_4767 |
| Author(s) : Takeno A , Okamoto A , Tori K , Oshima K , Hirakawa H , Toh H , Agata N , Yamada K , Ogasawara N , Hayashi T , Shimizu T , Kuhara S , Hattori M , Ohta M |
| Ref : Journal of Bacteriology , 194 :4767 , 2012 |
| Abstract : |
| PubMedSearch : Takeno_2012_J.Bacteriol_194_4767 |
| PubMedID: 22887669 |
| Gene_locus related to this paper: bacce-c2zyv1 |
| Title : Anammox organism KSU-1 expresses a NirK-type copper-containing nitrite reductase instead of a NirS-type with cytochrome cd1 - Hira_2012_FEBS.Lett_586_1658 |
| Author(s) : Hira D , Toh H , Migita CT , Okubo H , Nishiyama T , Hattori M , Furukawa K , Fujii T |
| Ref : FEBS Letters , 586 :1658 , 2012 |
| Abstract : |
| PubMedSearch : Hira_2012_FEBS.Lett_586_1658 |
| PubMedID: 22673575 |
| Gene_locus related to this paper: 9plan-i3iq59 , 9plan-i3ile2 , 9bact-i3ijt8 |
| Title : Complete genome sequence and comparative analysis of the fish pathogen Lactococcus garvieae - Morita_2011_PLoS.One_6_e23184 |
| Author(s) : Morita H , Toh H , Oshima K , Yoshizaki M , Kawanishi M , Nakaya K , Suzuki T , Miyauchi E , Ishii Y , Tanabe S , Murakami M , Hattori M |
| Ref : PLoS ONE , 6 :e23184 , 2011 |
| Abstract : |
| PubMedSearch : Morita_2011_PLoS.One_6_e23184 |
| PubMedID: 21829716 |
| Gene_locus related to this paper: lacgt-f9v7p0 |
| Title : Complete genome sequences of Arcobacter butzleri ED-1 and Arcobacter sp. strain L, both isolated from a microbial fuel cell - Toh_2011_J.Bacteriol_193_6411 |
| Author(s) : Toh H , Sharma VK , Oshima K , Kondo S , Hattori M , Ward FB , Free A , Taylor TD |
| Ref : Journal of Bacteriology , 193 :6411 , 2011 |
| Abstract : |
| PubMedSearch : Toh_2011_J.Bacteriol_193_6411 |
| PubMedID: 22038970 |
| Gene_locus related to this paper: 9prot-e6l4v2 , 9prot-g2hv40 , 9prot-a0a0g9kwp1 , 9prot-g2hwt3 |
| Title : Bifidobacteria can protect from enteropathogenic infection through production of acetate - Fukuda_2011_Nature_469_543 |
| Author(s) : Fukuda S , Toh H , Hase K , Oshima K , Nakanishi Y , Yoshimura K , Tobe T , Clarke JM , Topping DL , Suzuki T , Taylor TD , Itoh K , Kikuchi J , Morita H , Hattori M , Ohno H |
| Ref : Nature , 469 :543 , 2011 |
| Abstract : |
| PubMedSearch : Fukuda_2011_Nature_469_543 |
| PubMedID: 21270894 |
| Gene_locus related to this paper: bifli-c2gxu7 , biflo-BL0073 , biflo-BL0336 , biflo-BL0581 , biflo-BL0582 , biflo-BL0682 , biflo-BL0787 , biflo-BL0807 , biflo-BL1109 , biflo-BL1514 , biflo-PAP , biflo-PTRB , bifln-c2gtr2 |
| Title : Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2 - Toh_2010_J.Bacteriol_192_1165 |
| Author(s) : Toh H , Oshima K , Toyoda A , Ogura Y , Ooka T , Sasamoto H , Park SH , Iyoda S , Kurokawa K , Morita H , Itoh K , Taylor TD , Hayashi T , Hattori M |
| Ref : Journal of Bacteriology , 192 :1165 , 2010 |
| Abstract : |
| PubMedSearch : Toh_2010_J.Bacteriol_192_1165 |
| PubMedID: 20008064 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecos5-d2nhh3 , yerpe-YBTT , ecolx-f4suw9 |
| Title : Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103 - Morita_2009_J.Bacteriol_191_7630 |
| Author(s) : Morita H , Toh H , Oshima K , Murakami M , Taylor TD , Igimi S , Hattori M |
| Ref : Journal of Bacteriology , 191 :7630 , 2009 |
| Abstract : |
| PubMedSearch : Morita_2009_J.Bacteriol_191_7630 |
| PubMedID: 19820099 |
| Gene_locus related to this paper: lacrg-c7tei3 , lacrh-B2CZF3 , lacrh-b5qmk1 , lacrh-pepr , lacrh-pepx , lacrl-pip |
| Title : Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli - Ogura_2009_Proc.Natl.Acad.Sci.U.S.A_106_17939 |
| Author(s) : Ogura Y , Ooka T , Iguchi A , Toh H , Asadulghani M , Oshima K , Kodama T , Abe H , Nakayama K , Kurokawa K , Tobe T , Hattori M , Hayashi T |
| Ref : Proc Natl Acad Sci U S A , 106 :17939 , 2009 |
| Abstract : |
| PubMedSearch : Ogura_2009_Proc.Natl.Acad.Sci.U.S.A_106_17939 |
| PubMedID: 19815525 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C2429 , ecoli-C4836 , ecoli-d7xp23 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR , yerpe-YBTT |
| Title : Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production - Morita_2008_DNA.Res_15_151 |
| Author(s) : Morita H , Toh H , Fukuda S , Horikawa H , Oshima K , Suzuki T , Murakami M , Hisamatsu S , Kato Y , Takizawa T , Fukuoka H , Yoshimura T , Itoh K , O'Sullivan DJ , McKay LL , Ohno H , Kikuchi J , Masaoka T , Hattori M |
| Ref : DNA Research , 15 :151 , 2008 |
| Abstract : |
| PubMedSearch : Morita_2008_DNA.Res_15_151 |
| PubMedID: 18487258 |
| Gene_locus related to this paper: lacfe-c0wz89 , lacre-a5vi88 , lacre-b3xl59 , lacre-b3xl60 , lacre-b3xlh0 , lacre-b3xps7 , lacre-q4jle7 , lacre-q4jlf2 , lacre-q4jll5 , lacre-q6wu85 , lacrj-b2g622 |
| Title : Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen - Goto_2008_DNA.Res_15_39 |
| Author(s) : Goto T , Yamashita A , Hirakawa H , Matsutani M , Todo K , Ohshima K , Toh H , Miyamoto K , Kuhara S , Hattori M , Shimizu T , Akimoto S |
| Ref : DNA Research , 15 :39 , 2008 |
| Abstract : |
| PubMedSearch : Goto_2008_DNA.Res_15_39 |
| PubMedID: 18263572 |
| Title : Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult - Oshima_2008_DNA.Res_15_375 |
| Author(s) : Oshima K , Toh H , Ogura Y , Sasamoto H , Morita H , Park SH , Ooka T , Iyoda S , Taylor TD , Hayashi T , Itoh K , Hattori M |
| Ref : DNA Research , 15 :375 , 2008 |
| Abstract : |
| PubMedSearch : Oshima_2008_DNA.Res_15_375 |
| PubMedID: 18931093 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |
| Title : Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis - Naito_2008_DNA.Res_15_215 |
| Author(s) : Naito M , Hirakawa H , Yamashita A , Ohara N , Shoji M , Yukitake H , Nakayama K , Toh H , Yoshimura F , Kuhara S , Hattori M , Hayashi T |
| Ref : DNA Research , 15 :215 , 2008 |
| Abstract : |
| PubMedSearch : Naito_2008_DNA.Res_15_215 |
| PubMedID: 18524787 |
| Gene_locus related to this paper: porgi-DPP , porgi-q7mub3 , porgi-q7muw6 , porgi-q7mwa7 , porgi-q7mx03 |
| Title : Genome sequence of the cat pathogen, Chlamydophila felis - Azuma_2006_DNA.Res_13_15 |
| Author(s) : Azuma Y , Hirakawa H , Yamashita A , Cai Y , Rahman MA , Suzuki H , Mitaku S , Toh H , Goto S , Murakami T , Sugi K , Hayashi H , Fukushi H , Hattori M , Kuhara S , Shirai M |
| Ref : DNA Research , 13 :15 , 2006 |
| Abstract : |
| PubMedSearch : Azuma_2006_DNA.Res_13_15 |
| PubMedID: 16766509 |
| Gene_locus related to this paper: chlff-q253e0 , chlff-q254l8 |
| Title : Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host - Toh_2006_Genome.Res_16_149 |
| Author(s) : Toh H , Weiss BL , Perkin SA , Yamashita A , Oshima K , Hattori M , Aksoy S |
| Ref : Genome Res , 16 :149 , 2006 |
| Abstract : |
| PubMedSearch : Toh_2006_Genome.Res_16_149 |
| PubMedID: 16365377 |
| Gene_locus related to this paper: sodgm-q2nqh6 , sodgm-q2nqt2 , sodgm-q2nss6 , sodgm-q2nt34 , sodgm-q2nth7 , sodgm-q2nue4 , sodgm-q2nvf1 , sodgm-q2nwd0 |
| Title : Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection - Kuroda_2005_Proc.Natl.Acad.Sci.U.S.A_102_13272 |
| Author(s) : Kuroda M , Yamashita A , Hirakawa H , Kumano M , Morikawa K , Higashide M , Maruyama A , Inose Y , Matoba K , Toh H , Kuhara S , Hattori M , Ohta T |
| Ref : Proc Natl Acad Sci U S A , 102 :13272 , 2005 |
| Abstract : |
| PubMedSearch : Kuroda_2005_Proc.Natl.Acad.Sci.U.S.A_102_13272 |
| PubMedID: 16135568 |
| Gene_locus related to this paper: stas1-q4a0b8 , stas1-q4a0z3 , stas1-q4a018 , stas1-q4a076 , stas1-q4a169 , stas1-q49uw5 , stas1-q49vf8 , stas1-q49vg1 , stas1-q49vk0 , stas1-q49w07 , stas1-q49w20 , stas1-q49we3 , stas1-q49wg7 , stas1-q49ws3 , stas1-q49x95 , stas1-q49xp4 , stas1-q49yj4 , stas1-q49zd4 , stas1-q49zs7 |
| Title : Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation - Kuwahara_2004_Proc.Natl.Acad.Sci.U.S.A_101_14919 |
| Author(s) : Kuwahara T , Yamashita A , Hirakawa H , Nakayama H , Toh H , Okada N , Kuhara S , Hattori M , Hayashi T , Ohnishi Y |
| Ref : Proc Natl Acad Sci U S A , 101 :14919 , 2004 |
| Abstract : |
| PubMedSearch : Kuwahara_2004_Proc.Natl.Acad.Sci.U.S.A_101_14919 |
| PubMedID: 15466707 |
| Gene_locus related to this paper: bacfn-q5lh43 , bacfr-q64mh3 , bacfr-q64n33 , bacfr-q64qs3 , bacfr-q64t24 , bacfr-q64uj8 , bacfr-q64vl4 , bacfr-q64vx6 , bacfr-q64wh2 , bacfr-q64xp9 , bacfr-q64yv4 , bacfr-q650j0 |