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yeast-hda1

Saccharomyces cerevisiae (Baker's yeast); Saccharomyces cerevisiae x Saccharomyces kudriavzevii . Histone deacetylase HDA1 (only c-term Arb2 domain)

Comment

Other strains: Saccharomyces cerevisiae (strain ATCC 204508 \/ S288c) (Baker's yeast)\; Saccharomyces cerevisiae x Saccharomyces kudriavzevii (strain VIN7) (Yeast) || Other strains: Saccharomyces cerevisiae (ATCC 204508 \/ S288c\; YJM789\; CEN.PK113-7D\; Kyokai no. 7 \/ NBRC 101557\; AWRI1631\; JAY291\; Lalvin EC1118 \/ Prise de mousse\; RM11-1a)\; Saccharomyces sp. 'boulardii\; Saccharomyces cerevisiae x Saccharomyces kudriavzevii (strain VIN7)

Relationship

Family : Arb2_domain

Block : X

Position in NCBI Life Tree : Saccharomyces cerevisiae

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)

> cellular organisms N E > Eukaryota N E > Opisthokonta N E > Fungi N E > Dikarya N E > Ascomycota N E > saccharomyceta N E > Saccharomycotina N E > Saccharomycetes N E > Saccharomycetales N E > Saccharomycetaceae N E > Saccharomyces N E > Saccharomyces cerevisiae N E

Molecular evidence

No mutation

No kinetic

No disease

No substrate

No inhibitor

Database

Sequence

Peptide

PLQKAIRQQQ QHYLSDEFNF VTLPLVSMDL PDNTVLCTPN ISESNTIIIV VHDTSDIWAK RNVISGTIDL SSSVIIDNSL DFIKWGLDRK YGIIDVNIPL TLFEPDNYSG MITSQEVLIY LWDNYIKYFP SVAKIAFIGI GDSYSGIVHL LGHRDTRAVT KTVINFLGDK QLKPLVPLVD ETLSEWYFKN SLIFSNNSHQ CWKENESRKP RKKFGRVLRC DTDGLNNIIE ERFEEATDFI LDSFEEWSDE E

References (12)

Title : Structural and histone binding ability characterization of the ARB2 domain of a histone deacetylase Hda1 from Saccharomyces cerevisiae - Shen_2016_Sci.Rep_6_33905
Author(s) : Shen H , Zhu Y , Wang C , Yan H , Teng M , Li X
Ref : Sci Rep , 6 :33905 , 2016
Abstract :
PubMedSearch : Shen_2016_Sci.Rep_6_33905
PubMedID: 27665728
Gene_locus related to this paper: yeast-hda1

Title : The reference genome sequence of Saccharomyces cerevisiae: then and now - Engel_2014_G3.(Bethesda)_4_389
Author(s) : Engel SR , Dietrich FS , Fisk DG , Binkley G , Balakrishnan R , Costanzo MC , Dwight SS , Hitz BC , Karra K , Nash RS , Weng S , Wong ED , Lloyd P , Skrzypek MS , Miyasato SR , Simison M , Cherry JM
Ref : G3 (Bethesda) , 4 :389 , 2014
Abstract :
PubMedSearch : Engel_2014_G3.(Bethesda)_4_389
PubMedID: 24374639
Gene_locus related to this paper: yeast-hda1 , yeast-ymc0

Title : The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins - Borneman_2012_FEMS.Yeast.Res_12_88
Author(s) : Borneman AR , Desany BA , Riches D , Affourtit JP , Forgan AH , Pretorius IS , Egholm M , Chambers PJ
Ref : FEMS Yeast Res , 12 :88 , 2012
Abstract :
PubMedSearch : Borneman_2012_FEMS.Yeast.Res_12_88
PubMedID: 22136070
Gene_locus related to this paper: sacck-h0gtd1 , yeast-hda1

Title : De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology - Nijkamp_2012_Microb.Cell.Fact_11_36
Author(s) : Nijkamp JF , van den Broek M , Datema E , de Kok S , Bosman L , Luttik MA , Daran-Lapujade P , Vongsangnak W , Nielsen J , Heijne WH , Klaassen P , Paddon CJ , Platt D , Kotter P , van Ham RC , Reinders MJ , Pronk JT , de Ridder D , Daran JM
Ref : Microb Cell Fact , 11 :36 , 2012
Abstract :
PubMedSearch : Nijkamp_2012_Microb.Cell.Fact_11_36
PubMedID: 22448915
Gene_locus related to this paper: yeast-YDR428C , yeast-hda1

Title : Whole-genome sequencing of sake yeast Saccharomyces cerevisiae Kyokai no. 7 - Akao_2011_DNA.Res_18_423
Author(s) : Akao T , Yashiro I , Hosoyama A , Kitagaki H , Horikawa H , Watanabe D , Akada R , Ando Y , Harashima S , Inoue T , Inoue Y , Kajiwara S , Kitamoto K , Kitamoto N , Kobayashi O , Kuhara S , Masubuchi T , Mizoguchi H , Nakao Y , Nakazato A , Namise M , Oba T , Ogata T , Ohta A , Sato M , Shibasaki S , Takatsume Y , Tanimoto S , Tsuboi H , Nishimura A , Yoda K , Ishikawa T , Iwashita K , Fujita N , Shimoi H
Ref : DNA Research , 18 :423 , 2011
Abstract :
PubMedSearch : Akao_2011_DNA.Res_18_423
PubMedID: 21900213
Gene_locus related to this paper: yeast-YDR428C , yeast-hda1

Title : Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118 - Novo_2009_Proc.Natl.Acad.Sci.U.S.A_106_16333
Author(s) : Novo M , Bigey F , Beyne E , Galeote V , Gavory F , Mallet S , Cambon B , Legras JL , Wincker P , Casaregola S , Dequin S
Ref : Proc Natl Acad Sci U S A , 106 :16333 , 2009
Abstract :
PubMedSearch : Novo_2009_Proc.Natl.Acad.Sci.U.S.A_106_16333
PubMedID: 19805302
Gene_locus related to this paper: yeast-AIM2 , yeast-BST1 , yeast-cbpy1 , yeast-cld1 , yeast-dap1 , yeast-dap2 , yeast-dlhh , yeast-ECM18 , yeast-FSH1 , yeast-FSH3 , yeast-ict1 , yeast-kex01 , yeast-MCFS1 , yeast-MCFS2 , yeast-met2 , yeast-mgll , yeast-pdat , yeast-ppme1 , yeast-ROG1 , yeast-SAY1 , yeast-tgl1 , yeast-tgl2 , yeast-yby9 , yeast-YDL109C , yeast-YDR428C , yeast-YDR444W , yeast-yg19 , yeast-yj77 , yeast-yjg8 , yeast-YLL012W , yeast-YLR020C , yeast-YLR118c , yeast-ym60 , yeast-ynl5 , yeast-yo059 , yeast-YPR147C , yeast-hda1

Title : Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production - Argueso_2009_Genome.Res_19_2258
Author(s) : Argueso JL , Carazzolle MF , Mieczkowski PA , Duarte FM , Netto OV , Missawa SK , Galzerani F , Costa GG , Vidal RO , Noronha MF , Dominska M , Andrietta MG , Andrietta SR , Cunha AF , Gomes LH , Tavares FC , Alcarde AR , Dietrich FS , McCusker JH , Petes TD , Pereira GA
Ref : Genome Res , 19 :2258 , 2009
Abstract :
PubMedSearch : Argueso_2009_Genome.Res_19_2258
PubMedID: 19812109
Gene_locus related to this paper: yeast-AIM2 , yeast-BST1 , yeast-cbpy1 , yeast-cld1 , yeast-dap1 , yeast-dap2 , yeast-dlhh , yeast-ECM18 , yeast-FSH1 , yeast-FSH3 , yeast-ict1 , yeast-kex01 , yeast-LDH1 , yeast-MCFS1 , yeast-MCFS2 , yeast-met2 , yeast-mgll , yeast-pdat , yeast-ppme1 , yeast-ROG1 , yeast-SAY1 , yeast-tgl1 , yeast-tgl2 , yeast-yby9 , yeast-YDL109C , yeast-YDR428C , yeast-YDR444W , yeast-yg19 , yeast-yj77 , yeast-yjg8 , yeast-YLL012W , yeast-YLR020C , yeast-YLR118c , yeast-ym60 , yeast-ynl5 , yeast-yo059 , yeast-YPR147C , yeast-hda1

Title : Comparative genome analysis of a Saccharomyces cerevisiae wine strain - Borneman_2008_FEMS.Yeast.Res_8_1185
Author(s) : Borneman AR , Forgan AH , Pretorius IS , Chambers PJ
Ref : FEMS Yeast Res , 8 :1185 , 2008
Abstract :
PubMedSearch : Borneman_2008_FEMS.Yeast.Res_8_1185
PubMedID: 18778279
Gene_locus related to this paper: yeast-AIM2 , yeast-BST1 , yeast-cbpy1 , yeast-cld1 , yeast-dap1 , yeast-dap2 , yeast-dlhh , yeast-ECM18 , yeast-FSH1 , yeast-FSH3 , yeast-ict1 , yeast-kex01 , yeast-LDH1 , yeast-MCFS1 , yeast-MCFS2 , yeast-met2 , yeast-mgll , yeast-pdat , yeast-ppme1 , yeast-ROG1 , yeast-SAY1 , yeast-tgl1 , yeast-tgl2 , yeast-yby9 , yeast-YDR428C , yeast-YDR444W , yeast-yfd4 , yeast-yg19 , yeast-yj68 , yeast-yj77 , yeast-yjg8 , yeast-YLL012W , yeast-YLR020C , yeast-YLR118c , yeast-ym60 , yeast-ynl5 , yeast-yo059 , yeast-YPR147C , yeast-hda1

Title : Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789 - Wei_2007_Proc.Natl.Acad.Sci.U.S.A_104_12825
Author(s) : Wei W , McCusker JH , Hyman RW , Jones T , Ning Y , Cao Z , Gu Z , Bruno D , Miranda M , Nguyen M , Wilhelmy J , Komp C , Tamse R , Wang X , Jia P , Luedi P , Oefner PJ , David L , Dietrich FS , Li Y , Davis RW , Steinmetz LM
Ref : Proc Natl Acad Sci U S A , 104 :12825 , 2007
Abstract :
PubMedSearch : Wei_2007_Proc.Natl.Acad.Sci.U.S.A_104_12825
PubMedID: 17652520
Gene_locus related to this paper: yeast-AIM2 , yeast-BST1 , yeast-cbpy1 , yeast-cld1 , yeast-ATG15 , yeast-dap1 , yeast-dap2 , yeast-dlhh , yeast-ECM18 , yeast-FSH1 , yeast-FSH3 , yeast-ict1 , yeast-kex01 , yeast-LDH1 , yeast-MCFS1 , yeast-MCFS2 , yeast-met2 , yeast-mgll , yeast-pdat , yeast-ppme1 , yeast-ROG1 , yeast-SAY1 , yeast-tgl1 , yeast-tgl2 , yeast-yby9 , yeast-YDL109C , yeast-YDR428C , yeast-YDR444W , yeast-yfd4 , yeast-yg19 , yeast-yj77 , yeast-yjg8 , yeast-YLL012W , yeast-YLR020C , yeast-YLR118c , yeast-ym60 , yeast-ynl5 , yeast-yo059 , yeast-YPR147C , yeast-hda1

Title : Global analysis of protein expression in yeast - Ghaemmaghami_2003_Nature_425_737
Author(s) : Ghaemmaghami S , Huh WK , Bower K , Howson RW , Belle A , Dephoure N , O'Shea EK , Weissman JS
Ref : Nature , 425 :737 , 2003
Abstract :
PubMedSearch : Ghaemmaghami_2003_Nature_425_737
PubMedID: 14562106
Gene_locus related to this paper: yeast-AIM2 , yeast-ECM18 , yeast-FSH1 , yeast-FSH2 , yeast-MCFS1 , yeast-MCFS2 , yeast-mgll , yeast-YDL109C , yeast-YDR444W , yeast-yfd4 , yeast-yjg8 , yeast-YLR118c , yeast-yo059 , yeast-YPR147C , yeast-hda1 , yeast-ymc0

Title : The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications - Philippsen_1997_Nature_387_93
Author(s) : Philippsen P , Kleine K , Pohlmann R , Dusterhoft A , Hamberg K , Hegemann JH , Obermaier B , Urrestarazu LA , Aert R , Albermann K , Altmann R , Andre B , Baladron V , Ballesta JP , Becam AM , Beinhauer J , Boskovic J , Buitrago MJ , Bussereau F , Coster F , Crouzet M , D'Angelo M , Dal Pero F , De Antoni A , del Rey F , Doignon F , Domdey H , Dubois E , Fiedler T , Fleig U , Floeth M , Fritz C , Gaillardin C , Garcia-Cantalejo JM , Glansdorff NN , Goffeau A , Gueldener U , Herbert C , Heumann K , Heuss-Neitzel D , Hilbert H , Hinni K , Iraqui Houssaini I , Jacquet M , Jimenez A , Jonniaux JL , Karpfinger L , Lanfranchi G , Lepingle A , Levesque H , Lyck R , Maftahi M , Mallet L , Maurer KC , Messenguy F , Mewes HW , Mosti D , Nasr F , Nicaud JM , Niedenthal RK , Pandolfo D , Pierard A , Piravandi E , Planta RJ , Pohl TM , Purnelle B , Rebischung C , Remacha M , Revuelta JL , Rinke M , Saiz JE , Sartorello F , Scherens B , Sen-Gupta M , Soler-Mira A , Urbanus JH , Valle G , van Dyck L , Verhasselt P , Vierendeels F , Vissers S , Voet M , Volckaert G , Wach A , Wambutt R , Wedler H , Zollner A , Hani J
Ref : Nature , 387 :93 , 1997
Abstract :
PubMedSearch : Philippsen_1997_Nature_387_93
PubMedID: 9169873
Gene_locus related to this paper: yeast-SCYNR064C , yeast-hda1

Title : HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription - Rundlett_1996_Proc.Natl.Acad.Sci.U.S.A_93_14503
Author(s) : Rundlett SE , Carmen AA , Kobayashi R , Bavykin S , Turner BM , Grunstein M
Ref : Proc Natl Acad Sci U S A , 93 :14503 , 1996
Abstract :
PubMedSearch : Rundlett_1996_Proc.Natl.Acad.Sci.U.S.A_93_14503
PubMedID: 8962081
Gene_locus related to this paper: yeast-hda1