Gene_Locus Report

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Gene_locus Report for: orysa-q69y21

Oryza sativa subsp. japonica subsp. indica (Rice) putative prmc3

Relationship
Family|Plant_carboxylesterase
Block| H
Position in NCBI Life Tree|Oryza sativa
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AP003525, AP003458
3 UniProt : Q69Y21, A3B9M3, A2YAN2
3 UniProt : Q69Y21, A3B9M3, A2YAN2
3 Interpro : Q69Y21, A3B9M3, A2YAN2
3 Prodom : Q69Y21, A3B9M3, A2YAN2
3 Pfam : Q69Y21, A3B9M3, A2YAN2
3 PIRSF : Q69Y21, A3B9M3, A2YAN2
3 SUPERFAM : Q69Y21, A3B9M3, A2YAN2
Sequence
Graphical view for this peptide sequence: orysa-q69y21
Colored MSA for Plant_carboxylesterase (raw)
MASTDADADAVAVELLPFIRVYVSGRVERLLGTDTVAASLDEPTGVASKD
VTVDPATNLSVRLYLPPAVAAGERLPILVYFHGGGFMVESATSPTYHRYL
NALASRARVVAVSVEYRLAPEHPLPAAYDDSWAALAWAVATAAAPGAVDP
EPWLAAHGDASRVFIAGDSAGANIAHNVAMRAAAAPLPGGAGITGVLLMH
PYFWDASNTMGPALEDRIRREWRFMCGSPDVRVDDPRLSPTVQQGAPSLA
ALPCRRVMVAVAGDDFLAGKGRAYHAALVASRWHGEAELVDTPGEDHLFH
LTRPGTAAAAKMMDLVVDFVTR
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MASTDADADAVAVELLPFIRVYVSGRVERLLGTDTVAASLDEPTGVASKD
VTVDPATNLSVRLYLPPAVAAGERLPILVYFHGGGFMVESATSPTYHRYL
NALASRARVVAVSVEYRLAPEHPLPAAYDDSWAALAWAVATAAAPGAVDP
EPWLAAHGDASRVFIAGDSAGANIAHNVAMRAAAAPLPGGAGITGVLLMH
PYFWDASNTMGPALEDRIRREWRFMCGSPDVRVDDPRLSPTVQQGAPSLA
ALPCRRVMVAVAGDDFLAGKGRAYHAALVASRWHGEAELVDTPGEDHLFH
LTRPGTAAAAKMMDLVVDFVTR


References
1 more
    Title: Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
    Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R and Sasaki T <85 more author(s)>
    Ref: Genome Res, 17:175, 2007 : PubMed

            

    Title: The map-based sequence of the rice genome.
    Matsumo T, Sasaki T
    Ref: Nature, 436:793, 2005 : PubMed

            

    Title: Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
    Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H and Yasunishi A <64 more author(s)>
    Ref: Science, 301:376, 2003 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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