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Gene_locus Report for: orysj-pla1

Oryza sativa subsp. japonica ; indica (Rice). Phospholipase A1-II 1

Comment
Other strains: Oryza sativa subsp. japonica ; indica (Rice)


Relationship
Family|Plant_phospholipase
Block| L
Position in NCBI Life Tree|Oryza sativa subsp. japonica
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E > Oryza sativa Japonica Group: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 2 more: AP008207, AP014957, CM000138
2 UniProt : A2ZW16, A2WT95
2 UniProt : A2ZW16, A2WT95
2 Interpro : A2ZW16, A2WT95
2 Pfam : A2ZW16, A2WT95
2 PIRSF : A2ZW16, A2WT95
2 SUPERFAM : A2ZW16, A2WT95
Sequence
Graphical view for this peptide sequence: orysj-pla1
Colored MSA for Plant_phospholipase (raw)
MSSLRGLGNIARRWRELNGVSYWKGLLDPLDVDLRNNIINYGELSQAAYT
GLNRERRSRYAGSCLFSRKDFLSRVDVSNPNLYVITKFIYAMCTVSLPDA
FMIKSWSKAAWSKQSNWMGFVAVATDEGKEVLGRRDVVVAWRGTIRMVEW
MDDLDISLVPASEIVRPGSADDPCVHGGWLSVYTSADPESQYNKQSARYQ
VLNEIKRLQDMYEHEETSITITGHSLGAALATINATDIVSNGYNKSCPVS
AFVFGSPRVGNPDFQKAFDSAPDLRLLRIRNSPDVVPNWPKLGYSDAGTE
LMIDTGKSPYLKAPGNPLTWHDMECYMHGVAGTQGSNGGFKLEIDRDIAL
VNKHEDALKNEYAIPSSWWVVQNKGMVKGTDGRWHLADHEDDD
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSSLRGLGNIARRWRELNGVSYWKGLLDPLDVDLRNNIINYGELSQAAYT
GLNRERRSRYAGSCLFSRKDFLSRVDVSNPNLYVITKFIYAMCTVSLPDA
FMIKSWSKAAWSKQSNWMGFVAVATDEGKEVLGRRDVVVAWRGTIRMVEW
MDDLDISLVPASEIVRPGSADDPCVHGGWLSVYTSADPESQYNKQSARYQ
VLNEIKRLQDMYEHEETSITITGHSLGAALATINATDIVSNGYNKSCPVS
AFVFGSPRVGNPDFQKAFDSAPDLRLLRIRNSPDVVPNWPKLGYSDAGTE
LMIDTGKSPYLKAPGNPLTWHDMECYMHGVAGTQGSNGGFKLEIDRDIAL
VNKHEDALKNEYAIPSSWWVVQNKGMVKGTDGRWHLADHEDDD


References
1 more
    Title: Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
    Kawahara Y, de la Bastide M, Hamilton JP, Kanamori H, McCombie WR, Ouyang S, Schwartz DC, Tanaka T, Wu J and Matsumoto T <12 more author(s)>
    Ref: Rice (N Y), 6:4, 2013 : PubMed

            

    Title: The Rice Annotation Project Database (RAP-DB): 2008 update
    Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T and Echeverria M <80 more author(s)>
    Ref: Nucleic Acids Research, 36:D1028, 2008 : PubMed

            

    Title: The map-based sequence of the rice genome.
    Matsumo T, Sasaki T
    Ref: Nature, 436:793, 2005 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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