Gene_Locus Report

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Gene_locus Report for: lismo-LMO2677

Listeria monocytogenes (and strains 1/2a F6854; 4b H7858) hypothetical protein lmo2677

Comment
Could be the alpha/beta hydrolase OrfX downstream of KDE descibed in Brondsted et al. However more homologous to other alpha/beta hydrolase than RSbQ as mentioned in this paper. Q71W94 Listeria monocytogenes (serotype 4b / strain F2365) Nelson et al


Relationship
Family|6_AlphaBeta_hydrolase
Block| X
Position in NCBI Life Tree|Listeria monocytogenes
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Firmicutes: N E > Bacilli: N E > Bacillales: N E > Listeriaceae: N E > Listeria: N E > Listeria monocytogenes: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 1 more: AE017331, AL591984, AADQ01000007
1 UniProt : Q8Y401
1 UniProt : Q8Y401
1 Interpro : Q8Y401
1 Prodom : Q8Y401
1 Pfam : Q8Y401
1 PIRSF : Q8Y401
1 SUPERFAM : Q8Y401
Sequence
Graphical view for this peptide sequence: lismo-LMO2677
Colored MSA for 6_AlphaBeta_hydrolase (raw)
MHKTIRSVDVYYEKYGEGIPIIMIHGFAPDSQLMIGCMEPVFDKESSFSR
IYLDLPGMGKTENYDSIQNADHVLTLLLEFIEAVIPGEQFVLAGESYGGY
LTRGIAAKMPDRVLGVLLICPVIYPEKERRTLPEQKVMYQDDTFVQSLSK
GDRAYFSKSGVILTARNWNRFLAEVMAGMINADGEFLDRLSANYELSFDP
DEKVQFDVPALFLFGRQDDHVGYADGLTLLEKYPHASIAILDFAGHNLQI
EQPKIFTTMVQDFLFRVKPE
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MHKTIRSVDVYYEKYGEGIPIIMIHGFAPDSQLMIGCMEPVFDKESSFSR
IYLDLPGMGKTENYDSIQNADHVLTLLLEFIEAVIPGEQFVLAGESYGGY
LTRGIAAKMPDRVLGVLLICPVIYPEKERRTLPEQKVMYQDDTFVQSLSK
GDRAYFSKSGVILTARNWNRFLAEVMAGMINADGEFLDRLSANYELSFDP
DEKVQFDVPALFLFGRQDDHVGYADGLTLLEKYPHASIAILDFAGHNLQI
EQPKIFTTMVQDFLFRVKPE


References
    Title: Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species
    Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, Kolonay JF, Rasko DA, Angiuoli SV, Gill SR and Fraser CM <23 more author(s)>
    Ref: Nucleic Acids Research, 32:2386, 2004 : PubMed

            

    Title: kdpE and a putative RsbQ homologue contribute to growth of Listeria monocytogenes at high osmolarity and low temperature
    Brondsted L, Kallipolitis BH, Ingmer H, Knochel S
    Ref: FEMS Microbiology Letters, 219:233, 2003 : PubMed

            

    Title: Comparative genomics of Listeria species
    Glaser P, Frangeul L, Buchrieser C, Rusniok C, Amend A, Baquero F, Berche P, Bloecker H, Brandt P and Cossart P <45 more author(s)>
    Ref: Science, 294:849, 2001 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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