| Title : Whole-genome assembly of Klebsiella pneumoniae coproducing NDM-1 and OXA-232 carbapenemases using single-molecule, real-time sequencing - Doi_2014_Antimicrob.Agents.Chemother_58_5947 |
| Author(s) : Doi Y , Hazen TH , Boitano M , Tsai YC , Clark TA , Korlach J , Rasko DA |
| Ref : Antimicrobial Agents & Chemotherapy , 58 :5947 , 2014 |
| Abstract : |
| PubMedSearch : Doi_2014_Antimicrob.Agents.Chemother_58_5947 |
| PubMedID: 25070096 |
| Title : Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States - Sanjar_2014_Genome.Announc_2_e01120 |
| Author(s) : Sanjar F , Hazen TH , Shah SM , Koenig SS , Agrawal S , Daugherty S , Sadzewicz L , Tallon LJ , Mammel MK , Feng P , Soderlund R , Tarr PI , Debroy C , Dudley EG , Cebula TA , Ravel J , Fraser CM , Rasko DA , Eppinger M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : |
| PubMedSearch : Sanjar_2014_Genome.Announc_2_e01120 |
| PubMedID: 24407635 |
| Gene_locus related to this paper: ecoli-fes , ecoli-ycfp , ecoli-ypt1 , ecoli-yqia , ecoli-Z1930 |
| Title : Draft genome sequence of Vibrio fischeri SR5, a strain isolated from the light organ of the Mediterranean squid Sepiola robusta - Gyllborg_2012_J.Bacteriol_194_1639 |
| Author(s) : Gyllborg MC , Sahl JW , Cronin DC, 3rd , Rasko DA , Mandel MJ |
| Ref : Journal of Bacteriology , 194 :1639 , 2012 |
| Abstract : |
| PubMedSearch : Gyllborg_2012_J.Bacteriol_194_1639 |
| PubMedID: 22374964 |
| Gene_locus related to this paper: vibf1-q5e481 , alifs-h1r1i6 |
| Title : Whole-genome sequences of Bacillus subtilis and close relatives - Earl_2012_J.Bacteriol_194_2378 |
| Author(s) : Earl AM , Eppinger M , Fricke WF , Rosovitz MJ , Rasko DA , Daugherty S , Losick R , Kolter R , Ravel J |
| Ref : Journal of Bacteriology , 194 :2378 , 2012 |
| Abstract : |
| PubMedSearch : Earl_2012_J.Bacteriol_194_2378 |
| PubMedID: 22493193 |
| Gene_locus related to this paper: bacsu-YBAC , bacsu-ytxm , bacsu-YVAK |
| Title : Draft genome sequences of the diarrheagenic Escherichia coli collection - Hazen_2012_J.Bacteriol_194_3026 |
| Author(s) : Hazen TH , Sahl JW , Redman JC , Morris CR , Daugherty SC , Chibucos MC , Sengamalay NA , Fraser-Liggett CM , Steinsland H , Whittam TS , Whittam B , Manning SD , Rasko DA |
| Ref : Journal of Bacteriology , 194 :3026 , 2012 |
| Abstract : |
| PubMedSearch : Hazen_2012_J.Bacteriol_194_3026 |
| PubMedID: 22582382 |
| Gene_locus related to this paper: ecoli-d7xp23 , ecoli-fes , ecoli-MCMK , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930 , ecoli-YfhR |
| Title : Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany - Rasko_2011_N.Engl.J.Med_365_709 |
| Author(s) : Rasko DA , Webster DR , Sahl JW , Bashir A , Boisen N , Scheutz F , Paxinos EE , Sebra R , Chin CS , Iliopoulos D , Klammer A , Peluso P , Lee L , Kislyuk AO , Bullard J , Kasarskis A , Wang S , Eid J , Rank D , Redman JC , Steyert SR , Frimodt-Moller J , Struve C , Petersen AM , Krogfelt KA , Nataro JP , Schadt EE , Waldor MK |
| Ref : N Engl J Med , 365 :709 , 2011 |
| Abstract : |
| PubMedSearch : Rasko_2011_N.Engl.J.Med_365_709 |
| PubMedID: 21793740 |
| Gene_locus related to this paper: ecoli-fes , ecoli-MCMK , ecoli-yaim , ecoli-ycfp , ecoli-YFBB , ecoli-yiel , ecoli-yqia |
| Title : Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042 - Chaudhuri_2010_PLoS.One_5_e8801 |
| Author(s) : Chaudhuri RR , Sebaihia M , Hobman JL , Webber MA , Leyton DL , Goldberg MD , Cunningham AF , Scott-Tucker A , Ferguson PR , Thomas CM , Frankel G , Tang CM , Dudley EG , Roberts IS , Rasko DA , Pallen MJ , Parkhill J , Nataro JP , Thomson NR , Henderson IR |
| Ref : PLoS ONE , 5 :e8801 , 2010 |
| Abstract : |
| PubMedSearch : Chaudhuri_2010_PLoS.One_5_e8801 |
| PubMedID: 20098708 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-YfhR , yerpe-YBTT |
| Title : The complete genome sequence of Bacillus anthracis Ames Ancestor - Ravel_2009_J.Bacteriol_191_445 |
| Author(s) : Ravel J , Jiang L , Stanley ST , Wilson MR , Decker RS , Read TD , Worsham P , Keim PS , Salzberg SL , Fraser-Liggett CM , Rasko DA |
| Ref : Journal of Bacteriology , 191 :445 , 2009 |
| Abstract : |
| PubMedSearch : Ravel_2009_J.Bacteriol_191_445 |
| PubMedID: 18952800 |
| Gene_locus related to this paper: bacan-BA1866 , bacan-BA3703 , bacan-BA3805 , bacan-DHBF , bacce-BC0192 , bacce-BC1788 , bacce-BC4862 , bacce-PHAC , bacan-a0a6l7h3w8 |
| Title : Antimicrobial resistance-conferring plasmids with similarity to virulence plasmids from avian pathogenic Escherichia coli strains in Salmonella enterica serovar Kentucky isolates from poultry - Fricke_2009_Appl.Environ.Microbiol_75_5963 |
| Author(s) : Fricke WF , McDermott PF , Mammel MK , Zhao S , Johnson TJ , Rasko DA , Fedorka-Cray PJ , Pedroso A , Whichard JM , Leclerc JE , White DG , Cebula TA , Ravel J |
| Ref : Applied Environmental Microbiology , 75 :5963 , 2009 |
| Abstract : |
| PubMedSearch : Fricke_2009_Appl.Environ.Microbiol_75_5963 |
| PubMedID: 19648374 |
| Gene_locus related to this paper: ecoli-IROD , shidy-q67dv1 |
| Title : The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates - Rasko_2008_J.Bacteriol_190_6881 |
| Author(s) : Rasko DA , Rosovitz MJ , Myers GS , Mongodin EF , Fricke WF , Gajer P , Crabtree J , Sebaihia M , Thomson NR , Chaudhuri R , Henderson IR , Sperandio V , Ravel J |
| Ref : Journal of Bacteriology , 190 :6881 , 2008 |
| Abstract : |
| PubMedSearch : Rasko_2008_J.Bacteriol_190_6881 |
| PubMedID: 18676672 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z2445 , ecoli-YfhR |
| Title : The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever - Eppinger_2007_PLoS.Genet_3_e142 |
| Author(s) : Eppinger M , Rosovitz MJ , Fricke WF , Rasko DA , Kokorina G , Fayolle C , Lindler LE , Carniel E , Ravel J |
| Ref : PLoS Genet , 3 :e142 , 2007 |
| Abstract : |
| PubMedSearch : Eppinger_2007_PLoS.Genet_3_e142 |
| PubMedID: 17784789 |
| Gene_locus related to this paper: yerpe-BIOH , yerpe-dlhh , yerpe-PIP , yerpe-PTRB , yerpe-Y0507 , yerpe-y1616 , yerpe-y3224 , yerpe-YPLA , yerpe-YPO0180 , yerpe-YPO0667 , yerpe-YPO0773 , yerpe-YPO0986 , yerpe-YPO1501 , yerpe-YPO1997 , yerpe-YPO2526 , yerpe-YPO2814 |
| Title : Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1 - Rasko_2007_J.Bacteriol_189_52 |
| Author(s) : Rasko DA , Rosovitz MJ , Okstad OA , Fouts DE , Jiang L , Cer RZ , Kolsto AB , Gill SR , Ravel J |
| Ref : Journal of Bacteriology , 189 :52 , 2007 |
| Abstract : |
| PubMedSearch : Rasko_2007_J.Bacteriol_189_52 |
| PubMedID: 17041058 |
| Gene_locus related to this paper: bacce-c2zyv1 , bacce-q20cj0 , bacce-q20cj2 , bacti-q3elq7 |
| Title : Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens - Myers_2006_Genome.Res_16_1031 |
| Author(s) : Myers GS , Rasko DA , Cheung JK , Ravel J , Seshadri R , DeBoy RT , Ren Q , Varga J , Awad MM , Brinkac LM , Daugherty SC , Haft DH , Dodson RJ , Madupu R , Nelson WC , Rosovitz MJ , Sullivan SA , Khouri H , Dimitrov GI , Watkins KL , Mulligan S , Benton J , Radune D , Fisher DJ , Atkins HS , Hiscox T , Jost BH , Billington SJ , Songer JG , McClane BA , Titball RW , Rood JI , Melville SB , Paulsen IT |
| Ref : Genome Res , 16 :1031 , 2006 |
| Abstract : |
| PubMedSearch : Myers_2006_Genome.Res_16_1031 |
| PubMedID: 16825665 |
| Gene_locus related to this paper: clope-CPE0307 , clope-CPE0432 , clope-CPE1581 , clope-CPE1596 , clope-CPE1989 , clope-CPE2231 , clope-lipa , clope-LIPB , clope-PLDB |
| Title : Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species - Fouts_2005_PLoS.Biol_3_e15 |
| Author(s) : Fouts DE , Mongodin EF , Mandrell RE , Miller WG , Rasko DA , Ravel J , Brinkac LM , DeBoy RT , Parker CT , Daugherty SC , Dodson RJ , Durkin AS , Madupu R , Sullivan SA , Shetty JU , Ayodeji MA , Shvartsbeyn A , Schatz MC , Badger JH , Fraser CM , Nelson KE |
| Ref : PLoS Biol , 3 :e15 , 2005 |
| Abstract : |
| PubMedSearch : Fouts_2005_PLoS.Biol_3_e15 |
| PubMedID: 15660156 |
| Gene_locus related to this paper: camje-CJ0796C , camjr-q5ht69 , camjr-q5ht95 , camjr-q5huc7 , camjr-q5hwg6 , camju-a3yll6 |