Rasko DA

References (18)

Title : Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States - Sanjar_2014_Genome.Announc_2_e01120
Author(s) : Sanjar F , Hazen TH , Shah SM , Koenig SS , Agrawal S , Daugherty S , Sadzewicz L , Tallon LJ , Mammel MK , Feng P , Soderlund R , Tarr PI , Debroy C , Dudley EG , Cebula TA , Ravel J , Fraser CM , Rasko DA , Eppinger M
Ref : Genome Announc , 2 : , 2014
Abstract :
PubMedSearch : Sanjar_2014_Genome.Announc_2_e01120
PubMedID: 24407635
Gene_locus related to this paper: ecoli-fes , ecoli-ycfp , ecoli-ypt1 , ecoli-yqia , ecoli-Z1930

Title : Whole-genome assembly of Klebsiella pneumoniae coproducing NDM-1 and OXA-232 carbapenemases using single-molecule, real-time sequencing - Doi_2014_Antimicrob.Agents.Chemother_58_5947
Author(s) : Doi Y , Hazen TH , Boitano M , Tsai YC , Clark TA , Korlach J , Rasko DA
Ref : Antimicrobial Agents & Chemotherapy , 58 :5947 , 2014
Abstract :
PubMedSearch : Doi_2014_Antimicrob.Agents.Chemother_58_5947
PubMedID: 25070096

Title : Draft genome sequence of Vibrio fischeri SR5, a strain isolated from the light organ of the Mediterranean squid Sepiola robusta - Gyllborg_2012_J.Bacteriol_194_1639
Author(s) : Gyllborg MC , Sahl JW , Cronin DC, 3rd , Rasko DA , Mandel MJ
Ref : Journal of Bacteriology , 194 :1639 , 2012
Abstract :
PubMedSearch : Gyllborg_2012_J.Bacteriol_194_1639
PubMedID: 22374964
Gene_locus related to this paper: vibf1-q5e481 , alifs-h1r1i6

Title : Whole-genome sequences of Bacillus subtilis and close relatives - Earl_2012_J.Bacteriol_194_2378
Author(s) : Earl AM , Eppinger M , Fricke WF , Rosovitz MJ , Rasko DA , Daugherty S , Losick R , Kolter R , Ravel J
Ref : Journal of Bacteriology , 194 :2378 , 2012
Abstract :
PubMedSearch : Earl_2012_J.Bacteriol_194_2378
PubMedID: 22493193
Gene_locus related to this paper: bacsu-YBAC , bacsu-ytxm , bacsu-YVAK

Title : Draft genome sequences of the diarrheagenic Escherichia coli collection - Hazen_2012_J.Bacteriol_194_3026
Author(s) : Hazen TH , Sahl JW , Redman JC , Morris CR , Daugherty SC , Chibucos MC , Sengamalay NA , Fraser-Liggett CM , Steinsland H , Whittam TS , Whittam B , Manning SD , Rasko DA
Ref : Journal of Bacteriology , 194 :3026 , 2012
Abstract :
PubMedSearch : Hazen_2012_J.Bacteriol_194_3026
PubMedID: 22582382
Gene_locus related to this paper: ecoli-d7xp23 , ecoli-fes , ecoli-MCMK , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930 , ecoli-YfhR

Title : Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany - Rasko_2011_N.Engl.J.Med_365_709
Author(s) : Rasko DA , Webster DR , Sahl JW , Bashir A , Boisen N , Scheutz F , Paxinos EE , Sebra R , Chin CS , Iliopoulos D , Klammer A , Peluso P , Lee L , Kislyuk AO , Bullard J , Kasarskis A , Wang S , Eid J , Rank D , Redman JC , Steyert SR , Frimodt-Moller J , Struve C , Petersen AM , Krogfelt KA , Nataro JP , Schadt EE , Waldor MK
Ref : N Engl J Med , 365 :709 , 2011
Abstract :
PubMedSearch : Rasko_2011_N.Engl.J.Med_365_709
PubMedID: 21793740
Gene_locus related to this paper: ecoli-fes , ecoli-MCMK , ecoli-yaim , ecoli-ycfp , ecoli-YFBB , ecoli-yiel , ecoli-yqia

Title : Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042 - Chaudhuri_2010_PLoS.One_5_e8801
Author(s) : Chaudhuri RR , Sebaihia M , Hobman JL , Webber MA , Leyton DL , Goldberg MD , Cunningham AF , Scott-Tucker A , Ferguson PR , Thomas CM , Frankel G , Tang CM , Dudley EG , Roberts IS , Rasko DA , Pallen MJ , Parkhill J , Nataro JP , Thomson NR , Henderson IR
Ref : PLoS ONE , 5 :e8801 , 2010
Abstract :
PubMedSearch : Chaudhuri_2010_PLoS.One_5_e8801
PubMedID: 20098708
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-YfhR , yerpe-YBTT

Title : The complete genome sequence of Bacillus anthracis Ames Ancestor - Ravel_2009_J.Bacteriol_191_445
Author(s) : Ravel J , Jiang L , Stanley ST , Wilson MR , Decker RS , Read TD , Worsham P , Keim PS , Salzberg SL , Fraser-Liggett CM , Rasko DA
Ref : Journal of Bacteriology , 191 :445 , 2009
Abstract :
PubMedSearch : Ravel_2009_J.Bacteriol_191_445
PubMedID: 18952800
Gene_locus related to this paper: bacan-BA1866 , bacan-BA3703 , bacan-BA3805 , bacan-DHBF , bacce-BC0192 , bacce-BC1788 , bacce-BC4862 , bacce-PHAC , bacan-a0a6l7h3w8

Title : Antimicrobial resistance-conferring plasmids with similarity to virulence plasmids from avian pathogenic Escherichia coli strains in Salmonella enterica serovar Kentucky isolates from poultry - Fricke_2009_Appl.Environ.Microbiol_75_5963
Author(s) : Fricke WF , McDermott PF , Mammel MK , Zhao S , Johnson TJ , Rasko DA , Fedorka-Cray PJ , Pedroso A , Whichard JM , Leclerc JE , White DG , Cebula TA , Ravel J
Ref : Applied Environmental Microbiology , 75 :5963 , 2009
Abstract :
PubMedSearch : Fricke_2009_Appl.Environ.Microbiol_75_5963
PubMedID: 19648374
Gene_locus related to this paper: ecoli-IROD , shidy-q67dv1

Title : The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates - Rasko_2008_J.Bacteriol_190_6881
Author(s) : Rasko DA , Rosovitz MJ , Myers GS , Mongodin EF , Fricke WF , Gajer P , Crabtree J , Sebaihia M , Thomson NR , Chaudhuri R , Henderson IR , Sperandio V , Ravel J
Ref : Journal of Bacteriology , 190 :6881 , 2008
Abstract :
PubMedSearch : Rasko_2008_J.Bacteriol_190_6881
PubMedID: 18676672
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z2445 , ecoli-YfhR

Title : Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1 - Rasko_2007_J.Bacteriol_189_52
Author(s) : Rasko DA , Rosovitz MJ , Okstad OA , Fouts DE , Jiang L , Cer RZ , Kolsto AB , Gill SR , Ravel J
Ref : Journal of Bacteriology , 189 :52 , 2007
Abstract :
PubMedSearch : Rasko_2007_J.Bacteriol_189_52
PubMedID: 17041058
Gene_locus related to this paper: bacce-c2zyv1 , bacce-q20cj0 , bacce-q20cj2 , bacti-q3elq7

Title : The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever - Eppinger_2007_PLoS.Genet_3_e142
Author(s) : Eppinger M , Rosovitz MJ , Fricke WF , Rasko DA , Kokorina G , Fayolle C , Lindler LE , Carniel E , Ravel J
Ref : PLoS Genet , 3 :e142 , 2007
Abstract :
PubMedSearch : Eppinger_2007_PLoS.Genet_3_e142
PubMedID: 17784789
Gene_locus related to this paper: yerpe-BIOH , yerpe-dlhh , yerpe-PIP , yerpe-PTRB , yerpe-Y0507 , yerpe-y1616 , yerpe-y3224 , yerpe-YPLA , yerpe-YPO0180 , yerpe-YPO0667 , yerpe-YPO0773 , yerpe-YPO0986 , yerpe-YPO1501 , yerpe-YPO1997 , yerpe-YPO2526 , yerpe-YPO2814

Title : Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens - Myers_2006_Genome.Res_16_1031
Author(s) : Myers GS , Rasko DA , Cheung JK , Ravel J , Seshadri R , DeBoy RT , Ren Q , Varga J , Awad MM , Brinkac LM , Daugherty SC , Haft DH , Dodson RJ , Madupu R , Nelson WC , Rosovitz MJ , Sullivan SA , Khouri H , Dimitrov GI , Watkins KL , Mulligan S , Benton J , Radune D , Fisher DJ , Atkins HS , Hiscox T , Jost BH , Billington SJ , Songer JG , McClane BA , Titball RW , Rood JI , Melville SB , Paulsen IT
Ref : Genome Res , 16 :1031 , 2006
Abstract :
PubMedSearch : Myers_2006_Genome.Res_16_1031
PubMedID: 16825665
Gene_locus related to this paper: clope-CPE0307 , clope-CPE0432 , clope-CPE1581 , clope-CPE1596 , clope-CPE1989 , clope-CPE2231 , clope-lipa , clope-LIPB , clope-PLDB

Title : Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species - Fouts_2005_PLoS.Biol_3_e15
Author(s) : Fouts DE , Mongodin EF , Mandrell RE , Miller WG , Rasko DA , Ravel J , Brinkac LM , DeBoy RT , Parker CT , Daugherty SC , Dodson RJ , Durkin AS , Madupu R , Sullivan SA , Shetty JU , Ayodeji MA , Shvartsbeyn A , Schatz MC , Badger JH , Fraser CM , Nelson KE
Ref : PLoS Biol , 3 :e15 , 2005
Abstract :
PubMedSearch : Fouts_2005_PLoS.Biol_3_e15
PubMedID: 15660156
Gene_locus related to this paper: camje-CJ0796C , camjr-q5ht69 , camjr-q5ht95 , camjr-q5huc7 , camjr-q5hwg6 , camju-a3yll6

Title : Identification of anthrax toxin genes in a Bacillus cereus associated with an illness resembling inhalation anthrax - Hoffmaster_2004_Proc.Natl.Acad.Sci.U.S.A_101_8449
Author(s) : Hoffmaster AR , Ravel J , Rasko DA , Chapman GD , Chute MD , Marston CK , De BK , Sacchi CT , Fitzgerald C , Mayer LW , Maiden MC , Priest FG , Barker M , Jiang L , Cer RZ , Rilstone J , Peterson SN , Weyant RS , Galloway DR , Read TD , Popovic T , Fraser CM
Ref : Proc Natl Acad Sci U S A , 101 :8449 , 2004
Abstract :
PubMedSearch : Hoffmaster_2004_Proc.Natl.Acad.Sci.U.S.A_101_8449
PubMedID: 15155910
Gene_locus related to this paper: bacan-BA1019 , bacan-BA1242 , bacan-BA1727 , bacan-BA3703 , bacan-BA3887 , bacan-BA4577 , bacan-BA5136 , bacc1-q73ab2 , bacc1-q73c56 , bacc1-q735c5 , bacc1-q738j2 , bacce-BC0192 , bacce-BC0303 , bacce-BC1788 , bacce-BC1954 , bacce-BC2141 , bacce-BC2171 , bacce-BC3312 , bacce-BC3746 , bacce-BC4102 , bacce-BC4116 , bacce-BC4730 , bacce-BC4753 , bacce-BC4854 , bacce-BC4862 , bacce-BC5130 , bacce-BCE3188 , bacce-PHAC , bacce-q4mh74 , bacce-q4mmq7 , bacce-q4mrf9 , bacce-q4mue8 , bacce-q4muz0 , bacce-q4mvq8 , bacce-q4mwb5 , bacce-q4mx61 , bacce-q72yu1 , bacce-q736x9 , bacce-q738e6 , baccr-pepx

Title : The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1 - Rasko_2004_Nucleic.Acids.Res_32_977
Author(s) : Rasko DA , Ravel J , Okstad OA , Helgason E , Cer RZ , Jiang L , Shores KA , Fouts DE , Tourasse NJ , Angiuoli SV , Kolonay J , Nelson WC , Kolsto AB , Fraser CM , Read TD
Ref : Nucleic Acids Research , 32 :977 , 2004
Abstract :
PubMedSearch : Rasko_2004_Nucleic.Acids.Res_32_977
PubMedID: 14960714
Gene_locus related to this paper: bacan-BA1727 , bacan-BA2392 , bacan-BA2687 , bacan-BA3165 , bacan-BA3178 , bacan-BA3343 , bacan-BA4324 , bacan-BA5009 , bacan-BA5110 , bacc1-q72z64 , bacc1-q73a27 , bacc1-q73ab2 , bacc1-q73br9 , bacc1-q73bx8 , bacc1-q73c56 , bacc1-q73c93 , bacc1-q73cm7 , bacc1-q730c7 , bacc1-q731i0 , bacc1-q732y1 , bacc1-q732z3 , bacc1-q734r1 , bacc1-q735c5 , bacc1-q737t7 , bacc1-q738j2 , bacc1-q739p5 , bacce-BC0192 , bacce-BC0968 , bacce-BC1027 , bacce-BC1788 , bacce-BC1954 , bacce-BC2141 , bacce-BC2171 , bacce-BC3642 , bacce-BC4345 , bacce-BC4730 , bacce-BC4862 , bacce-BC4904 , bacce-BC5130 , bacce-BCE3188 , bacce-lipP , bacce-PHAC , bacce-q72yu1 , bacce-q73af5 , bacce-q735f1 , bacce-q736x9 , bacce-q738e6 , baccr-pepx

Title : Whole genome comparisons of serotype 4b and 1\/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species - Nelson_2004_Nucleic.Acids.Res_32_2386
Author(s) : Nelson KE , Fouts DE , Mongodin EF , Ravel J , DeBoy RT , Kolonay JF , Rasko DA , Angiuoli SV , Gill SR , Paulsen IT , Peterson J , White O , Nelson WC , Nierman W , Beanan MJ , Brinkac LM , Daugherty SC , Dodson RJ , Durkin AS , Madupu R , Haft DH , Selengut J , Van Aken S , Khouri H , Fedorova N , Forberger H , Tran B , Kathariou S , Wonderling LD , Uhlich GA , Bayles DO , Luchansky JB , Fraser CM
Ref : Nucleic Acids Research , 32 :2386 , 2004
Abstract :
PubMedSearch : Nelson_2004_Nucleic.Acids.Res_32_2386
PubMedID: 15115801
Gene_locus related to this paper: lismc-c1l0d9 , lismf-q71xq4 , lismo-LMO0110 , lismo-LMO0493 , lismo-LMO0580 , lismo-LMO0752 , lismo-LMO0760 , lismo-LMO0857 , lismo-LMO0950 , lismo-LMO0951 , lismo-LMO0977 , lismo-LMO1128 , lismo-LMO1258 , lismo-LMO1674 , lismo-LMO2089 , lismo-LMO2109 , lismo-LMO2433 , lismo-LMO2450 , lismo-LMO2452 , lismo-LMO2453 , lismo-LMO2578 , lismo-LMO2677 , lismo-LMO2755 , lismo-metx

Title : Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment - Moran_2004_Nature_432_910
Author(s) : Moran MA , Buchan A , Gonzalez JM , Heidelberg JF , Whitman WB , Kiene RP , Henriksen JR , King GM , Belas R , Fuqua C , Brinkac L , Lewis M , Johri S , Weaver B , Pai G , Eisen JA , Rahe E , Sheldon WM , Ye W , Miller TR , Carlton J , Rasko DA , Paulsen IT , Ren Q , Daugherty SC , DeBoy RT , Dodson RJ , Durkin AS , Madupu R , Nelson WC , Sullivan SA , Rosovitz MJ , Haft DH , Selengut J , Ward N
Ref : Nature , 432 :910 , 2004
Abstract :
PubMedSearch : Moran_2004_Nature_432_910
PubMedID: 15602564
Gene_locus related to this paper: silpo-q5lke5 , silpo-q5lke7 , silpo-q5lke8 , silpo-q5lkk5 , silpo-q5lkv2 , silpo-q5lln9 , silpo-q5llu0 , silpo-q5llu2 , silpo-q5llx5 , silpo-q5lm66 , silpo-q5lmb9 , silpo-q5lml9 , silpo-q5lnp6 , silpo-q5lp28 , silpo-q5lp48 , silpo-q5lp56 , silpo-q5lpa5 , silpo-q5lpf7 , silpo-q5lpy6 , silpo-q5lrk1 , silpo-q5lsn7 , silpo-q5ltb5 , silpo-q5ltk0 , silpo-q5ltm5 , silpo-q5ltw8 , silpo-q5ltw9 , silpo-q5ltx1 , silpo-q5ltx5 , silpo-q5lu02 , silpo-q5lv12 , silpo-q5lv17 , silpo-q5lv53 , silpo-q5lvg9 , silpo-q5lw35 , silpo-q5lwk9 , silpo-q5lws0