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Gene_locus Report for: orysa-Q5QLC0

Oryza sativa (japonica cultivar-group) putative carboxypeptidase d

Comment
Obsolete Q8LPY6 P0460C04.16 Oryza sativa subsp. japonica subsp. indica (Rice) Oryza glaberrima (African rice)


Relationship
Family|Carboxypeptidase_S10
Block| X
Position in NCBI Life Tree|Oryza sativa
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AP004366, CM000126
3 UniProt : Q5QLC0, A2WWP2, I1NT21
3 UniProt : Q5QLC0, A2WWP2, I1NT21
3 Interpro : Q5QLC0, A2WWP2, I1NT21
3 Pfam : Q5QLC0, A2WWP2, I1NT21
3 PIRSF : Q5QLC0, A2WWP2, I1NT21
3 SUPERFAM : Q5QLC0, A2WWP2, I1NT21
Sequence
Peptide
Graphical view for this peptide sequence: orysa-Q5QLC0
Colored MSA for Carboxypeptidase_S10 (raw) 
MAHKAAALVLLLVSVSVAAAASGDQESDRIRELPGQPAKVRFSQYSGYVT
VNQAHGRALFYWLVEAVPAAGPIAPLVLWLNGGPGCSSVGYGASEEVGPF
RIRPDGKTLYLNPNSWNKAANLLFLESPAGVGFSYSNKTLDLYVAGDAKT
ASDAYAFLVNWLERFPQYKYREFYIAGESYAGHYVPQLAQLIYEQNKGIQ
NPIINLKGFMVGNAVTDDYHDYLGTFEYWWTHGLISDNTYHNLKKTCLLE
SSEHPSPECLKNLNLASSEEGNIDPYSLYTKPCNNTASLKLGLGGRYPWL
SRAYDPCTERYSSIYYNRPEVQIAMHANTTGIQYSWKTCSDIVGSYWADS
PKSMLPIYQELIAAGIRIWVFSGDTDAVVPVTATRYSIDALKLPTMVNWY
PWYDHGKVGGWSQVYKGLTLVTIAGAGHEVPLHRPREALILFRHFLQNTP
MPTQ
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
MAHKAAALVLLLVSVSVAAAASGDQESDRIRELPGQPAKVRFSQYSGYVT
VNQAHGRALFYWLVEAVPAAGPIAPLVLWLNGGPGCSSVGYGASEEVGPF
RIRPDGKTLYLNPNSWNKAANLLFLESPAGVGFSYSNKTLDLYVAGDAKT
ASDAYAFLVNWLERFPQYKYREFYIAGESYAGHYVPQLAQLIYEQNKGIQ
NPIINLKGFMVGNAVTDDYHDYLGTFEYWWTHGLISDNTYHNLKKTCLLE
SSEHPSPECLKNLNLASSEEGNIDPYSLYTKPCNNTASLKLGLGGRYPWL
SRAYDPCTERYSSIYYNRPEVQIAMHANTTGIQYSWKTCSDIVGSYWADS
PKSMLPIYQELIAAGIRIWVFSGDTDAVVPVTATRYSIDALKLPTMVNWY
PWYDHGKVGGWSQVYKGLTLVTIAGAGHEVPLHRPREALILFRHFLQNTP
MPTQ

References
    Title: The Genomes of Oryza sativa: a history of duplications
    Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S and Yang H <88 more author(s)>
    Ref: PLoS Biol, 3:e38, 2005 : PubMed

            

    Title: The genome sequence and structure of rice chromosome 1
    Sasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z and Gojobori T <69 more author(s)>
    Ref: Nature, 420:312, 2002 : PubMed

            


Other Papers

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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