Gene_Locus Report

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Gene_locus Report for: orysa-cbp3

Oryza sativa, subsp. indica subsp. japonica (Rice) serine cbp3 gene for carboxypeptidase III

Comment
Oryza sativa subsp. japonica subsp. indica (Rice) Oryza glaberrima (African rice)


Relationship
Family|Carboxypeptidase_S10
Block| X
Position in NCBI Life Tree|Oryza sativa
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : D10985, AP004090, AP004867
>3 UniProt links 1 more: P37891, A2X026, Q0E4K7
1 Ncbi-nid : 218152
1 Ncbi-pid : 218153
>3 UniProt links 1 more: P37891, A2X026, Q0E4K7
>3 Interpro links 1 more: P37891, A2X026, Q0E4K7
>3 Prodom links 1 more: P37891, A2X026, Q0E4K7
>3 Pfam links 1 more: P37891, A2X026, Q0E4K7
>3 PIRSF links 1 more: P37891, A2X026, Q0E4K7
>3 SUPERFAM links 1 more: P37891, A2X026, Q0E4K7
Sequence
Graphical view for this peptide sequence: orysa-cbp3
Colored MSA for Carboxypeptidase_S10 (raw)
MATARVSLILLVVVLAASACAEGLRLPRDAKFPAAQAERLIRSLNLLPKE
AGPTGAGDVPSVAPGELLERRVTLPGLPQGVGDLGHHAGYYRLPNTHDAR
MFYFLFESRGKKEDPVVIWLTGGPGCSSELAVFYENGPFTISNNMSLAWN
KFGWDTISNIIFVDQPTGTGFSYSSDDRDTRHDETGVSNDLYSFLQVFFK
KHPEFAKNDFFITGESYAGHYIPAFASRVHQGNKANEGIHINLKGFAIGN
GLTDPAIQYKAYTDYALDMNLIKKSDYDRINKFIPPCEFAIKLCGTNGKA
SCMAAYMVCNSIFSSIMKLVGTKNYYDVRKECEGKLCYDFSNLEKFFGDK
AVKEAIGVGDLEFVSCSTTVYQAMLTDWMRNLEVGIPALLEDGINVLIYA
GEYDLICNWLGNSRWVHSMEWSGQKDFVSSHESPFVVDGAEAGVLKSHGP
LSFLKVHNAGHMVPMDQPKASLEMLRRFTQGKLKEEWLAELPEQPMYAAM
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MATARVSLILLVVVLAASACAEGLRLPRDAKFPAAQAERLIRSLNLLPKE
AGPTGAGDVPSVAPGELLERRVTLPGLPQGVGDLGHHAGYYRLPNTHDAR
MFYFLFESRGKKEDPVVIWLTGGPGCSSELAVFYENGPFTISNNMSLAWN
KFGWDTISNIIFVDQPTGTGFSYSSDDRDTRHDETGVSNDLYSFLQVFFK
KHPEFAKNDFFITGESYAGHYIPAFASRVHQGNKANEGIHINLKGFAIGN
GLTDPAIQYKAYTDYALDMNLIKKSDYDRINKFIPPCEFAIKLCGTNGKA
SCMAAYMVCNSIFSSIMKLVGTKNYYDVRKECEGKLCYDFSNLEKFFGDK
AVKEAIGVGDLEFVSCSTTVYQAMLTDWMRNLEVGIPALLEDGINVLIYA
GEYDLICNWLGNSRWVHSMEWSGQKDFVSSHESPFVVDGAEAGVLKSHGP
LSFLKVHNAGHMVPMDQPKASLEMLRRFTQGKLKEEWLAELPEQPMYAAM


References
3 more
    Title: The Genomes of Oryza sativa: a history of duplications
    Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S and Yang H <88 more author(s)>
    Ref: PLoS Biol, 3:e38, 2005 : PubMed

            

    Title: Organ-specific and hormone-dependent expression of genes for serine carboxypeptidases during development and following germination of rice grains
    Washio K, Ishikawa K
    Ref: Plant Physiol, 105:1275, 1994 : PubMed

            

    Title: Structure and expression during the germination of rice seeds of the gene for a carboxypeptidase
    Washio K, Ishikawa K
    Ref: Plant Mol Biol, 19:631, 1992 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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