Gene_Locus Report

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Gene_locus Report for: orysa-q67tv0

Oryza sativa subsp. japonica subsp. indica (Rice) gpi inositol-deacylase pgap1-like protein

Comment
only n-term Pfam A PGAP1 79 347


Relationship
Family|PGAP1
Block| X
Position in NCBI Life Tree|Oryza sativa
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AAA33334, AP005903
3 UniProt : Q67TV0, B8BDM5, B9G2G5
3 UniProt : Q67TV0, B8BDM5, B9G2G5
3 Interpro : Q67TV0, B8BDM5, B9G2G5
3 Prodom : Q67TV0, B8BDM5, B9G2G5
3 Pfam : Q67TV0, B8BDM5, B9G2G5
3 PIRSF : Q67TV0, B8BDM5, B9G2G5
3 SUPERFAM : Q67TV0, B8BDM5, B9G2G5
Sequence
Graphical view for this peptide sequence: orysa-q67tv0
Colored MSA for PGAP1 (raw)
MAGFGGTCRVAAVLVFTAWIALTALTRLLRPVPNGCVMTYMYPTYIPVST
PKNVSSDRYALFLYHEGWKQIDFHHHLSNLNGVPVLFIPGNGGSYKQVRS
LAAESFRAYQNGPLEPTFYREASTAFSVNELEGFSIPSRYGRMLDWFAVD
LEGEHSAMDGRILEEHTEYVVYAIHRILDQYKESHLARSKGRAQSSDNLP
SSVILVGHSMGGFVARAALVHPGLRKSAVETILTLSSPHQYPPIALQPSL
GQFFLHVNEEWRNGYKTGLSRTSSAKLSNVVVVSVAGGIHDYQVRSKLAL
LDGIVPSTHGFMVGSSSMKNVWLSMEHQSILWCNQLVVQVAHTLLSMVDP
LNGQPFLSSQKRLFVFAKMLQSAVPQSLSWVAPVSGVKPPNLIASGNKEA
SDLQQKDSLSCPPSLQWTSD
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MAGFGGTCRVAAVLVFTAWIALTALTRLLRPVPNGCVMTYMYPTYIPVST
PKNVSSDRYALFLYHEGWKQIDFHHHLSNLNGVPVLFIPGNGGSYKQVRS
LAAESFRAYQNGPLEPTFYREASTAFSVNELEGFSIPSRYGRMLDWFAVD
LEGEHSAMDGRILEEHTEYVVYAIHRILDQYKESHLARSKGRAQSSDNLP
SSVILVGHSMGGFVARAALVHPGLRKSAVETILTLSSPHQYPPIALQPSL
GQFFLHVNEEWRNGYKTGLSRTSSAKLSNVVVVSVAGGIHDYQVRSKLAL
LDGIVPSTHGFMVGSSSMKNVWLSMEHQSILWCNQLVVQVAHTLLSMVDP
LNGQPFLSSQKRLFVFAKMLQSAVPQSLSWVAPVSGVKPPNLIASGNKEA
SDLQQKDSLSCPPSLQWTSD


References
1 more
    Title: Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
    Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R and Sasaki T <85 more author(s)>
    Ref: Genome Res, 17:175, 2007 : PubMed

            

    Title: The map-based sequence of the rice genome.
    Matsumo T, Sasaki T
    Ref: Nature, 436:793, 2005 : PubMed

            

    Title: Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
    Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H and Yasunishi A <64 more author(s)>
    Ref: Science, 301:376, 2003 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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