| Title : Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus - Tang_2011_BMC.Genomics_12_334 |
| Author(s) : Tang KH , Barry K , Chertkov O , Dalin E , Han CS , Hauser LJ , Honchak BM , Karbach LE , Land ML , Lapidus A , Larimer FW , Mikhailova N , Pitluck S , Pierson BK , Blankenship RE |
| Ref : BMC Genomics , 12 :334 , 2011 |
| Abstract : |
| PubMedSearch : Tang_2011_BMC.Genomics_12_334 |
| PubMedID: 21714912 |
| Gene_locus related to this paper: chlaa-a9we32 |
| Title : Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614 - Coleman_2011_J.Bacteriol_193_3399 |
| Author(s) : Coleman NV , Wilson NL , Barry K , Brettin TS , Bruce DC , Copeland A , Dalin E , Detter JC , Del Rio TG , Goodwin LA , Hammon NM , Han S , Hauser LJ , Israni S , Kim E , Kyrpides N , Land ML , Lapidus A , Larimer FW , Lucas S , Pitluck S , Richardson P , Schmutz J , Tapia R , Thompson S , Tice HN , Spain JC , Gossett JG , Mattes TE |
| Ref : Journal of Bacteriology , 193 :3399 , 2011 |
| Abstract : |
| PubMedSearch : Coleman_2011_J.Bacteriol_193_3399 |
| PubMedID: 21551312 |
| Gene_locus related to this paper: nocsj-a1sil5 |
| Title : Genome sequence of Chthoniobacter flavus Ellin428, an aerobic heterotrophic soil bacterium - Kant_2011_J.Bacteriol_193_2902 |
| Author(s) : Kant R , van Passel MW , Palva A , Lucas S , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Larimer FW , Land ML , Hauser L , Sangwan P , de Vos WM , Janssen PH , Smidt H |
| Ref : Journal of Bacteriology , 193 :2902 , 2011 |
| Abstract : |
| PubMedSearch : Kant_2011_J.Bacteriol_193_2902 |
| PubMedID: 21460085 |
| Gene_locus related to this paper: 9bact-b4cw55 , 9bact-b4cx55 , 9bact-b4cy19 , 9bact-b4cyt2 , 9bact-b4cyu5 , 9bact-b4cza3 , 9bact-b4d1u0 , 9bact-b4d2s5 , 9bact-b4d373 , 9bact-b4d393 , 9bact-b4d914 , 9bact-b4daa7 , 9bact-b4dav5 , 9bact-b4db04 , 9bact-b4dc95 , 9bact-b4d3q8.1 , 9bact-b4d3q8.2 |
| Title : Genome sequence of Pedosphaera parvula Ellin514, an aerobic Verrucomicrobial isolate from pasture soil - Kant_2011_J.Bacteriol_193_2900 |
| Author(s) : Kant R , van Passel MW , Sangwan P , Palva A , Lucas S , Copeland A , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Chertkov O , Larimer FW , Land ML , Hauser L , Brettin TS , Detter JC , Han S , de Vos WM , Janssen PH , Smidt H |
| Ref : Journal of Bacteriology , 193 :2900 , 2011 |
| Abstract : |
| PubMedSearch : Kant_2011_J.Bacteriol_193_2900 |
| PubMedID: 21460084 |
| Gene_locus related to this paper: 9bact-b9xah7.1 , 9bact-b9xah7.2 , 9bact-b9xba2 , 9bact-b9xfz4 , 9bact-b9xh19 , 9bact-b9xhn8 , 9bact-b9xj62 , 9bact-b9xjh1 , 9bact-b9xku6 , 9bact-b9xku8 , 9bact-b9xnx1 , 9bact-b9xp64 , 9bact-b9xp74 |
| Title : Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract - van Passel_2011_J.Bacteriol_193_2373 |
| Author(s) : van Passel MW , Kant R , Palva A , Lucas S , Copeland A , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Davenport KW , Sims D , Brettin TS , Detter JC , Han S , Larimer FW , Land ML , Hauser L , Kyrpides N , Ovchinnikova G , Richardson PP , de Vos WM , Smidt H , Zoetendal EG |
| Ref : Journal of Bacteriology , 193 :2373 , 2011 |
| Abstract : |
| PubMedSearch : van Passel_2011_J.Bacteriol_193_2373 |
| PubMedID: 21398537 |
| Gene_locus related to this paper: 9bact-d1n3e0 , 9bact-d1n3w1 , 9bact-d1n5u2 , 9bact-d1n6r9 , 9bact-d1n8l2 , 9bact-d1n8z8 , 9bact-d1n9n1 , 9bact-d1n9u1 , 9bact-d1n752 , 9bact-d1n881 , 9bact-d1naa7 , 9bact-d1nb62 , 9bact-d1nbd5 , 9bact-d1nbg1 , 9bact-d1nbh9 , 9bact-d1nbv9 |
| Title : Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems - van Passel_2011_J.Bacteriol_193_2367 |
| Author(s) : van Passel MW , Kant R , Palva A , Copeland A , Lucas S , Lapidus A , Glavina Del Rio T , Pitluck S , Goltsman E , Clum A , Sun H , Schmutz J , Larimer FW , Land ML , Hauser L , Kyrpides N , Mikhailova N , Richardson PP , Janssen PH , de Vos WM , Smidt H |
| Ref : Journal of Bacteriology , 193 :2367 , 2011 |
| Abstract : |
| PubMedSearch : van Passel_2011_J.Bacteriol_193_2367 |
| PubMedID: 21398538 |
| Gene_locus related to this paper: opitp-b1zrm2 |
| Title : Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans - Sievert_2008_Appl.Environ.Microbiol_74_1145 |
| Author(s) : Sievert SM , Scott KM , Klotz MG , Chain PS , Hauser LJ , Hemp J , Hugler M , Land M , Lapidus A , Larimer FW , Lucas S , Malfatti SA , Meyer F , Paulsen IT , Ren Q , Simon J |
| Ref : Applied Environmental Microbiology , 74 :1145 , 2008 |
| Abstract : |
| PubMedSearch : Sievert_2008_Appl.Environ.Microbiol_74_1145 |
| PubMedID: 18065616 |
| Gene_locus related to this paper: suldn-q30ua6 , suldn-q30rs9 |
| Title : Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation - Stein_2007_Environ.Microbiol_9_2993 |
| Author(s) : Stein LY , Arp DJ , Berube PM , Chain PS , Hauser L , Jetten MS , Klotz MG , Larimer FW , Norton JM , Op den Camp HJ , Shin M , Wei X |
| Ref : Environ Microbiol , 9 :2993 , 2007 |
| Abstract : |
| PubMedSearch : Stein_2007_Environ.Microbiol_9_2993 |
| PubMedID: 17991028 |
| Gene_locus related to this paper: nitec-metx , nitec-q0ae77 , nitec-q0ag98 , nitec-q0ahg3 , nitec-q0aix1 , nitec-q0ajy0 , nitec-q0aea2 , nitec-q0aea3 |
| Title : Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1 - Kane_2007_J.Bacteriol_189_1931 |
| Author(s) : Kane SR , Chakicherla AY , Chain PS , Schmidt R , Shin MW , Legler TC , Scow KM , Larimer FW , Lucas SM , Richardson PM , Hristova KR |
| Ref : Journal of Bacteriology , 189 :1931 , 2007 |
| Abstract : |
| PubMedSearch : Kane_2007_J.Bacteriol_189_1931 |
| PubMedID: 17158667 |
| Gene_locus related to this paper: metpp-a2scm2 , metpp-a2set2 , metpp-a2sg50 , metpp-a2sg73 , metpp-a2si41 , metpp-a2siz8 , metpp-a2skw2 , metpp-a2slp5 , metpp-a2slq1 , metpp-a2slq8 , metpp-a2sly3 , metpp-metx , metpp-a2smg5 , metpp-a2skr2 , metpp-a2sg36 , metpp-a2sjv0 |
| Title : Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707 - Klotz_2006_Appl.Environ.Microbiol_72_6299 |
| Author(s) : Klotz MG , Arp DJ , Chain PS , El-Sheikh AF , Hauser LJ , Hommes NG , Larimer FW , Malfatti SA , Norton JM , Poret-Peterson AT , Vergez LM , Ward BB |
| Ref : Applied Environmental Microbiology , 72 :6299 , 2006 |
| Abstract : |
| PubMedSearch : Klotz_2006_Appl.Environ.Microbiol_72_6299 |
| PubMedID: 16957257 |
| Gene_locus related to this paper: nitoc-q3jai4 , nitoc-q3jbe6 , nitoc-q3j9s2 |
| Title : Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255 - Starkenburg_2006_Appl.Environ.Microbiol_72_2050 |
| Author(s) : Starkenburg SR , Chain PS , Sayavedra-Soto LA , Hauser L , Land ML , Larimer FW , Malfatti SA , Klotz MG , Bottomley PJ , Arp DJ , Hickey WJ |
| Ref : Applied Environmental Microbiology , 72 :2050 , 2006 |
| Abstract : |
| PubMedSearch : Starkenburg_2006_Appl.Environ.Microbiol_72_2050 |
| PubMedID: 16517654 |
| Gene_locus related to this paper: nitwn-metx , nitwn-q3sn49 , nitwn-q3snc4 , nitwn-q3sne0 , nitwn-q3spr7 , nitwn-q3sqi0 , nitwn-q3sqk9 , nitwn-q3ss14 , nitwn-q3ss30 , nitwn-q3svd2 , nitwn-q3swe3 |
| Title : The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2 - Scott_2006_PLoS.Biol_4_e383 |
| Author(s) : Scott KM , Sievert SM , Abril FN , Ball LA , Barrett CJ , Blake RA , Boller AJ , Chain PS , Clark JA , Davis CR , Detter C , Do KF , Dobrinski KP , Faza BI , Fitzpatrick KA , Freyermuth SK , Harmer TL , Hauser LJ , Hugler M , Kerfeld CA , Klotz MG , Kong WW , Land M , Lapidus A , Larimer FW , Longo DL , Lucas S , Malfatti SA , Massey SE , Martin DD , McCuddin Z , Meyer F , Moore JL , Ocampo LH, Jr. , Paul JH , Paulsen IT , Reep DK , Ren Q , Ross RL , Sato PY , Thomas P , Tinkham LE , Zeruth GT |
| Ref : PLoS Biol , 4 :e383 , 2006 |
| Abstract : |
| PubMedSearch : Scott_2006_PLoS.Biol_4_e383 |
| PubMedID: 17105352 |
| Gene_locus related to this paper: thicr-q31fm2 , thicr-q31ih5 |
| Title : The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans - Beller_2006_J.Bacteriol_188_1473 |
| Author(s) : Beller HR , Chain PS , Letain TE , Chakicherla A , Larimer FW , Richardson PM , Coleman MA , Wood AP , Kelly DP |
| Ref : Journal of Bacteriology , 188 :1473 , 2006 |
| Abstract : |
| PubMedSearch : Beller_2006_J.Bacteriol_188_1473 |
| PubMedID: 16452431 |
| Gene_locus related to this paper: thida-q3sez3 , thida-q3sfi8 , thida-q3sfs9 , thida-q3sgm5 , thida-q3sh03 , thida-q3sij1 , thida-q3sja9 , thida-q3sk45 , thida-q3slh7 , thida-q3slx8 |
| Title : Whole-genome analyses of speciation events in pathogenic Brucellae - Chain_2005_Infect.Immun_73_8353 |
| Author(s) : Chain PS , Comerci DJ , Tolmasky ME , Larimer FW , Malfatti SA , Vergez LM , Aguero F , Land ML , Ugalde RA , Garcia E |
| Ref : Infect Immun , 73 :8353 , 2005 |
| Abstract : |
| PubMedSearch : Chain_2005_Infect.Immun_73_8353 |
| PubMedID: 16299333 |
| Gene_locus related to this paper: brume-BMEI0552 , brume-BMEI0733 , brume-BMEI1044 , brume-BMEI1119 , brume-BMEI1365 , brume-BMEI1594 , brume-BMEI1608 , brume-BMEI1822 , brume-BMEI1884 , brume-BMEI1951 , brume-BMEI2011 , brume-BMEII0047 , brume-BMEII0681 , brume-dhE2 , brume-PCAD , brusu-BR0288 , brusu-BR1327 |
| Title : Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis - Chain_2004_Proc.Natl.Acad.Sci.U.S.A_101_13826 |
| Author(s) : Chain PS , Carniel E , Larimer FW , Lamerdin J , Stoutland PO , Regala WM , Georgescu AM , Vergez LM , Land ML , Motin VL , Brubaker RR , Fowler J , Hinnebusch J , Marceau M , Medigue C , Simonet M , Chenal-Francisque V , Souza B , Dacheux D , Elliott JM , Derbise A , Hauser LJ , Garcia E |
| Ref : Proc Natl Acad Sci U S A , 101 :13826 , 2004 |
| Abstract : |
| PubMedSearch : Chain_2004_Proc.Natl.Acad.Sci.U.S.A_101_13826 |
| PubMedID: 15358858 |
| Gene_locus related to this paper: yerpe-BIOH , yerpe-dlhh , yerpe-IRP1 , yerpe-PIP , yerpe-PLDB , yerpe-PTRB , yerpe-Y0507 , yerpe-Y0644 , yerpe-y1616 , yerpe-y3224 , yerpe-YBTT , yerpe-YPLA , yerpe-YPO0180 , yerpe-YPO0667 , yerpe-YPO0773 , yerpe-YPO0776 , yerpe-YPO0986 , yerpe-YPO1501 , yerpe-YPO1997 , yerpe-YPO2002 , yerpe-YPO2336 , yerpe-YPO2526 , yerpe-YPO2638 , yerpe-YPO2814 |
| Title : The genome of a motile marine Synechococcus - Palenik_2003_Nature_424_1037 |
| Author(s) : Palenik B , Brahamsha B , Larimer FW , Land M , Hauser L , Chain P , Lamerdin J , Regala W , Allen EE , McCarren J , Paulsen I , Dufresne A , Partensky F , Webb EA , Waterbury J |
| Ref : Nature , 424 :1037 , 2003 |
| Abstract : |
| PubMedSearch : Palenik_2003_Nature_424_1037 |
| PubMedID: 12917641 |
| Gene_locus related to this paper: synpx-q7u3b1 , synpx-q7u3f4 , synpx-q7u3l2 , synpx-q7u7h0 , synpx-q7u8c6 , synpx-q7u8i5 , synpx-q7u9d5 , synpx-q7u9k7 , synpx-q7u648 , synpx-q7u656 , synpx-q7ua09 , synsp-SYNW0105 , synsp-SYNW0159 , synsp-SYNW0681 , synsp-SYNW0940 |
| Title : Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation - Rocap_2003_Nature_424_1042 |
| Author(s) : Rocap G , Larimer FW , Lamerdin J , Malfatti S , Chain P , Ahlgren NA , Arellano A , Coleman M , Hauser L , Hess WR , Johnson ZI , Land M , Lindell D , Post AF , Regala W , Shah M , Shaw SL , Steglich C , Sullivan MB , Ting CS , Tolonen A , Webb EA , Zinser ER , Chisholm SW |
| Ref : Nature , 424 :1042 , 2003 |
| Abstract : |
| PubMedSearch : Rocap_2003_Nature_424_1042 |
| PubMedID: 12917642 |
| Gene_locus related to this paper: prom3-a2c804 , proma-PMM0356 , proma-PMM1153 , proma-PMM1599 , proma-PMM1628 , proma-PMT0128 , proma-PMT1063 , proma-PMT1175 , proma-PMT1943 , proma-TODF , promm-q7v4t5 , promm-q7v5f8 , promm-q7v6l0 , promm-q7v6v8 , promm-q7v8b7 , promm-q7v8c5 , promm-q7v8g2 , promp-q7v0v8 , promp-q7v3k6 , promp-q7v139 , promp-q7v266 , promp-q7v291 , promp-q7v298 , promp-q7v327 , promm-q7v8g5 , prom3-a2ce38 |