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Kube M

References (23)

Title : Analysis of the complete genomes of Acholeplasma brassicae, A. palmae and A. laidlawii and their comparison to the obligate parasites from 'Candidatus Phytoplasma' - Kube_2014_J.Mol.Microbiol.Biotechnol_24_19
Author(s) : Kube M , Siewert C , Migdoll AM , Duduk B , Holz S , Rabus R , Seemuller E , Mitrovic J , Muller I , Buttner C , Reinhardt R
Ref : J Molecular Microbiology Biotechnol , 24 :19 , 2014
Abstract :
PubMedSearch : Kube_2014_J.Mol.Microbiol.Biotechnol_24_19
PubMedID: 24158107
Gene_locus related to this paper: 9molu-u4krv5

Title : Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica - Kube_2013_Nat.Commun_4_2156
Author(s) : Kube M , Chernikova TN , Al-Ramahi Y , Beloqui A , Lopez-Cortez N , Guazzaroni ME , Heipieper HJ , Klages S , Kotsyurbenko OR , Langer I , Nechitaylo TY , Lunsdorf H , Fernandez M , Juarez S , Ciordia S , Singer A , Kagan O , Egorova O , Petit PA , Stogios P , Kim Y , Tchigvintsev A , Flick R , Denaro R , Genovese M , Albar JP , Reva ON , Martinez-Gomariz M , Tran H , Ferrer M , Savchenko A , Yakunin AF , Yakimov MM , Golyshina OV , Reinhardt R , Golyshin PN
Ref : Nat Commun , 4 :2156 , 2013
Abstract :
PubMedSearch : Kube_2013_Nat.Commun_4_2156
PubMedID: 23877221
Gene_locus related to this paper: olean-olei00960 , olean-r4ym14 , olean-r4yv64 , olean-r4ys13

Title : Complete genome, catabolic sub-proteomes and key-metabolites of Desulfobacula toluolica Tol2, a marine, aromatic compound-degrading, sulfate-reducing bacterium - Wohlbrand_2013_Environ.Microbiol_15_1334
Author(s) : Wohlbrand L , Jacob JH , Kube M , Mussmann M , Jarling R , Beck A , Amann R , Wilkes H , Reinhardt R , Rabus R
Ref : Environ Microbiol , 15 :1334 , 2013
Abstract :
PubMedSearch : Wohlbrand_2013_Environ.Microbiol_15_1334
PubMedID: 23088741
Gene_locus related to this paper: destt-k0nmq2

Title : Structure and activity of the cold-active and anion-activated carboxyl esterase OLEI01171 from the oil-degrading marine bacterium Oleispira antarctica - Lemak_2012_Biochem.J_445_193
Author(s) : Lemak S , Tchigvintsev A , Petit P , Flick R , Singer AU , Brown G , Evdokimova E , Egorova O , Gonzalez CF , Chernikova TN , Yakimov MM , Kube M , Reinhardt R , Golyshin PN , Savchenko A , Yakunin AF
Ref : Biochemical Journal , 445 :193 , 2012
Abstract :
PubMedSearch : Lemak_2012_Biochem.J_445_193
PubMedID: 22519667
Gene_locus related to this paper: olean-d0vwz4

Title : Complete genome sequence of Methylocystis sp. strain SC2, an aerobic methanotroph with high-affinity methane oxidation potential - Dam_2012_J.Bacteriol_194_6008
Author(s) : Dam B , Dam S , Kube M , Reinhardt R , Liesack W
Ref : Journal of Bacteriology , 194 :6008 , 2012
Abstract :
PubMedSearch : Dam_2012_J.Bacteriol_194_6008
PubMedID: 23045511

Title : Alkane degradation under anoxic conditions by a nitrate-reducing bacterium with possible involvement of the electron acceptor in substrate activation - Zedelius_2011_Environ.Microbiol.Rep_3_125
Author(s) : Zedelius J , Rabus R , Grundmann O , Werner I , Brodkorb D , Schreiber F , Ehrenreich P , Behrends A , Wilkes H , Kube M , Reinhardt R , Widdel F
Ref : Environ Microbiol Rep , 3 :125 , 2011
Abstract :
PubMedSearch : Zedelius_2011_Environ.Microbiol.Rep_3_125
PubMedID: 21837252
Gene_locus related to this paper: 9gamm-e1vi37 , 9gamm-e1vjh4 , 9gamm-e1vli3 , 9gamm-e1vqy3 , 9gamm-e1vnt0 , 9gamm-e1vj65 , 9gamm-e1vpf8

Title : Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula - Jones_2011_Proc.Natl.Acad.Sci.U.S.A_108_8815
Author(s) : Jones AC , Monroe EA , Podell S , Hess WR , Klages S , Esquenazi E , Niessen S , Hoover H , Rothmann M , Lasken RS , Yates JR, 3rd , Reinhardt R , Kube M , Burkart MD , Allen EE , Dorrestein PC , Gerwick WH , Gerwick L
Ref : Proc Natl Acad Sci U S A , 108 :8815 , 2011
Abstract :
PubMedSearch : Jones_2011_Proc.Natl.Acad.Sci.U.S.A_108_8815
PubMedID: 21555588
Gene_locus related to this paper: 9cyan-f4xvi1 , 9cyan-f4xkf8 , 9cyan-f4y3s0

Title : Comparative genomic analysis of fruiting body formation in Myxococcales - Huntley_2011_Mol.Biol.Evol_28_1083
Author(s) : Huntley S , Hamann N , Wegener-Feldbrugge S , Treuner-Lange A , Kube M , Reinhardt R , Klages S , Muller R , Ronning CM , Nierman WC , Sogaard-Andersen L
Ref : Molecular Biology Evolution , 28 :1083 , 2011
Abstract :
PubMedSearch : Huntley_2011_Mol.Biol.Evol_28_1083
PubMedID: 21037205
Gene_locus related to this paper: stiad-q08nm4 , stiad-q08xf5 , stiad-q08va0 , stiad-e3fgi9

Title : Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group - Meyerdierks_2010_Environ.Microbiol_12_422
Author(s) : Meyerdierks A , Kube M , Kostadinov I , Teeling H , Glockner FO , Reinhardt R , Amann R
Ref : Environ Microbiol , 12 :422 , 2010
Abstract :
PubMedSearch : Meyerdierks_2010_Environ.Microbiol_12_422
PubMedID: 19878267
Gene_locus related to this paper: 9arch-d1j9b3 , 9arch-d1ja37 , 9arch-d1jaz1 , 9arch-q64ad0

Title : Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae - Kube_2010_BMC.Genomics_11_393
Author(s) : Kube M , Migdoll AM , Gehring I , Heitmann K , Mayer Y , Kuhl H , Knaust F , Geider K , Reinhardt R
Ref : BMC Genomics , 11 :393 , 2010
Abstract :
PubMedSearch : Kube_2010_BMC.Genomics_11_393
PubMedID: 20565991
Gene_locus related to this paper: 9entr-d8mru2 , erwac-d4i3s4 , erwbe-d8mnk7 , erwbe-d8mus5 , erwp6-d2tb51 , erwpe-d0fv08 , erwpe-d0fwy1 , erwpe-d0fx20 , erwpy-d0fr69 , erwbe-d8mx29 , erwse-e3dex4 , erwbe-d8mqu3 , erwbe-d8mxb0 , erwbe-d8mmb0

Title : The genome of Erwinia tasmaniensis strain Et1\/99, a non-pathogenic bacterium in the genus Erwinia - Kube_2008_Environ.Microbiol_10_2211
Author(s) : Kube M , Migdoll AM , Muller I , Kuhl H , Beck A , Reinhardt R , Geider K
Ref : Environ Microbiol , 10 :2211 , 2008
Abstract :
PubMedSearch : Kube_2008_Environ.Microbiol_10_2211
PubMedID: 18462403
Gene_locus related to this paper: erwt9-b2vih8 , erwt9-b2vjv8 , erwt9-b2vkk6 , erwt9-y2597 , erwt9-b2vgh9

Title : The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali' - Kube_2008_BMC.Genomics_9_306
Author(s) : Kube M , Schneider B , Kuhl H , Dandekar T , Heitmann K , Migdoll AM , Reinhardt R , Seemuller E
Ref : BMC Genomics , 9 :306 , 2008
Abstract :
PubMedSearch : Kube_2008_BMC.Genomics_9_306
PubMedID: 18582369
Gene_locus related to this paper: phymt-b3qzy9

Title : Genome analysis of the platypus reveals unique signatures of evolution - Warren_2008_Nature_453_175
Author(s) : Warren WC , Hillier LW , Marshall Graves JA , Birney E , Ponting CP , Grutzner F , Belov K , Miller W , Clarke L , Chinwalla AT , Yang SP , Heger A , Locke DP , Miethke P , Waters PD , Veyrunes F , Fulton L , Fulton B , Graves T , Wallis J , Puente XS , Lopez-Otin C , Ordonez GR , Eichler EE , Chen L , Cheng Z , Deakin JE , Alsop A , Thompson K , Kirby P , Papenfuss AT , Wakefield MJ , Olender T , Lancet D , Huttley GA , Smit AF , Pask A , Temple-Smith P , Batzer MA , Walker JA , Konkel MK , Harris RS , Whittington CM , Wong ES , Gemmell NJ , Buschiazzo E , Vargas Jentzsch IM , Merkel A , Schmitz J , Zemann A , Churakov G , Kriegs JO , Brosius J , Murchison EP , Sachidanandam R , Smith C , Hannon GJ , Tsend-Ayush E , McMillan D , Attenborough R , Rens W , Ferguson-Smith M , Lefevre CM , Sharp JA , Nicholas KR , Ray DA , Kube M , Reinhardt R , Pringle TH , Taylor J , Jones RC , Nixon B , Dacheux JL , Niwa H , Sekita Y , Huang X , Stark A , Kheradpour P , Kellis M , Flicek P , Chen Y , Webber C , Hardison R , Nelson J , Hallsworth-Pepin K , Delehaunty K , Markovic C , Minx P , Feng Y , Kremitzki C , Mitreva M , Glasscock J , Wylie T , Wohldmann P , Thiru P , Nhan MN , Pohl CS , Smith SM , Hou S , Nefedov M , de Jong PJ , Renfree MB , Mardis ER , Wilson RK
Ref : Nature , 453 :175 , 2008
Abstract :
PubMedSearch : Warren_2008_Nature_453_175
PubMedID: 18464734
Gene_locus related to this paper: ornan-f6s0q0 , ornan-f6ty74 , ornan-f6u2k2 , ornan-f6uve1 , ornan-f6vpb6 , ornan-f6ybp3 , ornan-f7bgu8 , ornan-f7ct41 , ornan-f7cza1 , ornan-f7ejp8 , ornan-f7exu1 , ornan-f7f392 , ornan-f7f9y6 , ornan-f6ve87 , ornan-f7f1d9 , ornan-f6z3l1 , ornan-f6r3f9 , ornan-f6r3g8 , ornan-f6vs71 , ornan-f7g4v8 , ornan-f7e7q0 , ornan-a0a6i8nt83 , ornan-f6umy6

Title : Comparative genome analysis of four magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function - Richter_2007_J.Bacteriol_189_4899
Author(s) : Richter M , Kube M , Bazylinski DA , Lombardot T , Glockner FO , Reinhardt R , Schuler D
Ref : Journal of Bacteriology , 189 :4899 , 2007
Abstract :
PubMedSearch : Richter_2007_J.Bacteriol_189_4899
PubMedID: 17449609
Gene_locus related to this paper: 9prot-a4u2g1 , 9prot-a4u2n1 , 9prot-a4u4p5 , 9prot-a4u5l5 , 9prot-a4u049 , 9prot-a4u391

Title : The DNA sequence, annotation and analysis of human chromosome 3 - Muzny_2006_Nature_440_1194
Author(s) : Muzny DM , Scherer SE , Kaul R , Wang J , Yu J , Sudbrak R , Buhay CJ , Chen R , Cree A , Ding Y , Dugan-Rocha S , Gill R , Gunaratne P , Harris RA , Hawes AC , Hernandez J , Hodgson AV , Hume J , Jackson A , Khan ZM , Kovar-Smith C , Lewis LR , Lozado RJ , Metzker ML , Milosavljevic A , Miner GR , Morgan MB , Nazareth LV , Scott G , Sodergren E , Song XZ , Steffen D , Wei S , Wheeler DA , Wright MW , Worley KC , Yuan Y , Zhang Z , Adams CQ , Ansari-Lari MA , Ayele M , Brown MJ , Chen G , Chen Z , Clendenning J , Clerc-Blankenburg KP , Davis C , Delgado O , Dinh HH , Dong W , Draper H , Ernst S , Fu G , Gonzalez-Garay ML , Garcia DK , Gillett W , Gu J , Hao B , Haugen E , Havlak P , He X , Hennig S , Hu S , Huang W , Jackson LR , Jacob LS , Kelly SH , Kube M , Levy R , Li Z , Liu B , Liu J , Liu W , Lu J , Maheshwari M , Nguyen BV , Okwuonu GO , Palmeiri A , Pasternak S , Perez LM , Phelps KA , Plopper FJ , Qiang B , Raymond C , Rodriguez R , Saenphimmachak C , Santibanez J , Shen H , Shen Y , Subramanian S , Tabor PE , Verduzco D , Waldron L , Wang Q , Williams GA , Wong GK , Yao Z , Zhang J , Zhang X , Zhao G , Zhou J , Zhou Y , Nelson D , Lehrach H , Reinhardt R , Naylor SL , Yang H , Olson M , Weinstock G , Gibbs RA
Ref : Nature , 440 :1194 , 2006
Abstract :
PubMedSearch : Muzny_2006_Nature_440_1194
PubMedID: 16641997
Gene_locus related to this paper: human-AADAC , human-AADACL2 , human-ABHD5 , human-ABHD6 , human-ABHD10 , human-ABHD14A , human-APEH , human-BCHE , human-CIB , human-LIPH , human-MGLL , human-NLGN1 , human-PLA1A

Title : Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere - Erkel_2006_Science_313_370
Author(s) : Erkel C , Kube M , Reinhardt R , Liesack W
Ref : Science , 313 :370 , 2006
Abstract :
PubMedSearch : Erkel_2006_Science_313_370
PubMedID: 16857943
Gene_locus related to this paper: uncma-q0w2a8 , uncma-q0w2n6 , uncma-q0w6n9 , uncma-q0w8i3 , uncma-q0w8x7 , uncma-q0w484 , uncma-q0w562

Title : Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter - Bauer_2006_Environ.Microbiol_8_2201
Author(s) : Bauer M , Kube M , Teeling H , Richter M , Lombardot T , Allers E , Wurdemann CA , Quast C , Kuhl H , Knaust F , Woebken D , Bischof K , Mussmann M , Choudhuri JV , Meyer F , Reinhardt R , Amann RI , Glockner FO
Ref : Environ Microbiol , 8 :2201 , 2006
Abstract :
PubMedSearch : Bauer_2006_Environ.Microbiol_8_2201
PubMedID: 17107561
Gene_locus related to this paper: grafk-a0ly58 , grafk-a0lyb1 , grafk-a0lzl9 , grafk-a0lzn2 , grafk-a0m3f2 , grafk-a0m3h3 , grafk-a0m3u0 , grafk-a0m4n9 , grafk-a0m5m4 , grafk-a0m6x9 , grafk-a0m6z1 , grafk-a0m243 , grafk-a0m536 , grafk-a0m641 , grafk-a0m784 , grafk-a0m4i1

Title : The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1 - Rabus_2005_Arch.Microbiol_183_27
Author(s) : Rabus R , Kube M , Heider J , Beck A , Heitmann K , Widdel F , Reinhardt R
Ref : Arch Microbiol , 183 :27 , 2005
Abstract :
PubMedSearch : Rabus_2005_Arch.Microbiol_183_27
PubMedID: 15551059
Gene_locus related to this paper: aroae-metx , aroae-q5nz38 , aroae-q5nzf6 , aroae-q5nzt3 , aroae-q5nzz6 , aroae-q5p0p4 , aroae-q5p0w7 , aroae-q5p1d0 , aroae-q5p1l8 , aroae-q5p3d9 , aroae-q5p3m7 , aroae-q5p3t3 , aroae-q5p4k6 , aroae-q5p4m0 , aroae-q5p4u0 , aroae-q5p6k3 , aroae-q5p8f6 , aroae-q5p072 , aroae-q5p115 , aroae-q5p962 , aroae-q5p966 , aroae-q5p2a5 , aroae-q5p2a4

Title : Insights into the genomes of archaea mediating the anaerobic oxidation of methane - Meyerdierks_2005_Environ.Microbiol_7_1937
Author(s) : Meyerdierks A , Kube M , Lombardot T , Knittel K , Bauer M , Glockner FO , Reinhardt R , Amann R
Ref : Environ Microbiol , 7 :1937 , 2005
Abstract :
PubMedSearch : Meyerdierks_2005_Environ.Microbiol_7_1937
PubMedID: 16309392

Title : Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1 - Kube_2005_Nat.Biotechnol_23_1269
Author(s) : Kube M , Beck A , Zinder SH , Kuhl H , Reinhardt R , Adrian L
Ref : Nat Biotechnol , 23 :1269 , 2005
Abstract :
PubMedSearch : Kube_2005_Nat.Biotechnol_23_1269
PubMedID: 16116419
Gene_locus related to this paper: dehsc-q3zxf2 , dehsc-q3zy55 , dehsc-q3zyd4 , dehsc-q3zyk7 , dehmv-d2bg80

Title : The genome of the kinetoplastid parasite, Leishmania major - Ivens_2005_Science_309_436
Author(s) : Ivens AC , Peacock CS , Worthey EA , Murphy L , Aggarwal G , Berriman M , Sisk E , Rajandream MA , Adlem E , Aert R , Anupama A , Apostolou Z , Attipoe P , Bason N , Bauser C , Beck A , Beverley SM , Bianchettin G , Borzym K , Bothe G , Bruschi CV , Collins M , Cadag E , Ciarloni L , Clayton C , Coulson RM , Cronin A , Cruz AK , Davies RM , De Gaudenzi J , Dobson DE , Duesterhoeft A , Fazelina G , Fosker N , Frasch AC , Fraser A , Fuchs M , Gabel C , Goble A , Goffeau A , Harris D , Hertz-Fowler C , Hilbert H , Horn D , Huang Y , Klages S , Knights A , Kube M , Larke N , Litvin L , Lord A , Louie T , Marra M , Masuy D , Matthews K , Michaeli S , Mottram JC , Muller-Auer S , Munden H , Nelson S , Norbertczak H , Oliver K , O'Neil S , Pentony M , Pohl TM , Price C , Purnelle B , Quail MA , Rabbinowitsch E , Reinhardt R , Rieger M , Rinta J , Robben J , Robertson L , Ruiz JC , Rutter S , Saunders D , Schafer M , Schein J , Schwartz DC , Seeger K , Seyler A , Sharp S , Shin H , Sivam D , Squares R , Squares S , Tosato V , Vogt C , Volckaert G , Wambutt R , Warren T , Wedler H , Woodward J , Zhou S , Zimmermann W , Smith DF , Blackwell JM , Stuart KD , Barrell B , Myler PJ
Ref : Science , 309 :436 , 2005
Abstract :
PubMedSearch : Ivens_2005_Science_309_436
PubMedID: 16020728
Gene_locus related to this paper: leima-e9ady6 , leima-L2464.12 , leima-L2802.02 , leima-OPB , leima-q4fw33 , leima-q4fwg8 , leima-q4fwj0 , leima-q4fya7 , leima-q4q0a1 , leima-q4q0t5 , leima-q4q0v0 , leima-q4q1h9 , leima-q4q2c9 , leima-q4q4j7 , leima-q4q4t6 , leima-q4q5j1 , leima-q4q6e9 , leima-q4q7v8 , leima-q4q8a8 , leima-q4q9g9 , leima-q4q080 , leima-q4q398 , leima-q4q615 , leima-q4q819 , leima-q4q871 , leima-q4q942 , leima-q4qae7 , leima-q4qb85 , leima-q4qdz7 , leima-q4qe26 , leima-q4qe31 , leima-q4qe85 , leima-q4qe86 , leima-q4qe87 , leima-q4qe90 , leima-q4qec8 , leima-q4qgz4 , leima-q4qgz5 , leima-q4qhs0 , leima-q4qj45

Title : DNA sequence and comparative analysis of chimpanzee chromosome 22 - Watanabe_2004_Nature_429_382
Author(s) : Watanabe H , Fujiyama A , Hattori M , Taylor TD , Toyoda A , Kuroki Y , Noguchi H , BenKahla A , Lehrach H , Sudbrak R , Kube M , Taenzer S , Galgoczy P , Platzer M , Scharfe M , Nordsiek G , Blocker H , Hellmann I , Khaitovich P , Paabo S , Reinhardt R , Zheng HJ , Zhang XL , Zhu GF , Wang BF , Fu G , Ren SX , Zhao GP , Chen Z , Lee YS , Cheong JE , Choi SH , Wu KM , Liu TT , Hsiao KJ , Tsai SF , Kim CG , S OO , Kitano T , Kohara Y , Saitou N , Park HS , Wang SY , Yaspo ML , Sakaki Y
Ref : Nature , 429 :382 , 2004
Abstract :
PubMedSearch : Watanabe_2004_Nature_429_382
PubMedID: 15164055
Gene_locus related to this paper: pantr-a0a2j8lmv7

Title : Complete genome sequence of the marine planctomycete Pirellula sp. strain 1 - Glockner_2003_Proc.Natl.Acad.Sci.U.S.A_100_8298
Author(s) : Glockner FO , Kube M , Bauer M , Teeling H , Lombardot T , Ludwig W , Gade D , Beck A , Borzym K , Heitmann K , Rabus R , Schlesner H , Amann R , Reinhardt R
Ref : Proc Natl Acad Sci U S A , 100 :8298 , 2003
Abstract :
PubMedSearch : Glockner_2003_Proc.Natl.Acad.Sci.U.S.A_100_8298
PubMedID: 12835416
Gene_locus related to this paper: rhoba-DHLA , rhoba-EPHA , rhoba-pepx , rhoba-PLDB , rhoba-q7tty3 , rhoba-q7ufy7 , rhoba-q7ug04 , rhoba-q7uh76 , rhoba-q7uhj7 , rhoba-q7uik0 , rhoba-q7uit3 , rhoba-q7ujb6 , rhoba-q7ujc7.1 , rhoba-q7ujc7.2 , rhoba-q7ujd0 , rhoba-q7ujp7 , rhoba-q7ujv7 , rhoba-q7uk55 , rhoba-q7uk83 , rhoba-q7ul52 , rhoba-q7ule9 , rhoba-q7umh7 , rhoba-q7upt9 , rhoba-q7uq60 , rhoba-q7uqf1 , rhoba-q7uqr5 , rhoba-q7uqz0 , rhoba-q7ur17 , rhoba-q7ur85 , rhoba-q7urv6 , rhoba-q7us57 , rhoba-q7usu9 , rhoba-q7ut87 , rhoba-q7ut89 , rhoba-q7utj6 , rhoba-q7uua2 , rhoba-q7uvu6 , rhoba-q7uw49 , rhoba-q7uw53 , rhoba-q7uwf0 , rhoba-q7uwf1 , rhoba-q7uxn0 , rhoba-q7uyb7 , rhoba-q7uyh2 , rhoba-q7uz96 , rhoba-RB3694 , rhoba-RB4467 , rhoba-RB7907 , rhoba-RB9080 , rhoba-RB9565 , rhoba-RB13257