arath-AT1G73920

 
Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) putative lipase

Comment
only c-term Pfam A Abhydro_lipase 296 351


Relationship
Block X
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



>3 Genbank links 2 more: AY050984, BT004416, AC016662
>3 UniProt links 1 more: Q949N8, Q9C9B3, D7KRN7
>3 UniProtTrembl links 1 more: Q949N8, Q9C9B3, D7KRN7
>3 Interpro links 1 more: Q949N8, Q9C9B3, D7KRN7
>3 Prodom links 1 more: Q949N8, Q9C9B3, D7KRN7
>3 Pfam links 1 more: Q949N8, Q9C9B3, D7KRN7
>3 PIRSF links 1 more: Q949N8, Q9C9B3, D7KRN7
>3 SUPERFAM links 1 more: Q949N8, Q9C9B3, D7KRN7
>3 QuickSwissBlast links 1 more: Q949N8, Q9C9B3, D7KRN7
1 Tair database : AT1G73920
 
Sequence
Graphical view for this peptide sequence: arath-AT1G73920
Colored MSA for Acidic_Lipase (raw)
PSPTERPVESPTRLYNSMNTDTRTCQDVITELGYPYEAIRVITSDGYVLV
LERIPRRDARKAVFLQHGVLDSSMGWVSNGVVGSPAFAAYDQGYDVFLGN
FRGLVSRDHVNKNISSKEFWRYSINEHGTEDIPAMIEKIHEIKTTELKLC
QPNIDEEINQEEPYKLCAICHSLGGAAILMYVITRKIKEKPHRLSRLILL
SPAGFHEDSNLGFTIVEYIFLFISPVLARIVPAFYIPTRFFRMLLNKLAR
DFHNYPALGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPAVSFRVAQ
HLAQIKHTGKFRMYDYGSRSANMEVYGSPEPLDLGESYKFIDVPVDLVAG
RNDKVIRSSMVKKHYNVMRDAEVDVSFNEFEYAHLDFTFSHREELLRYVM
SRLLLVKQTPVQQRQTSQKGMKLKKKKKEGTVV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

PSPTERPVESPTRLYNSMNTDTRTCQDVITELGYPYEAIRVITSDGYVLV
LERIPRRDARKAVFLQHGVLDSSMGWVSNGVVGSPAFAAYDQGYDVFLGN
FRGLVSRDHVNKNISSKEFWRYSINEHGTEDIPAMIEKIHEIKTTELKLC
QPNIDEEINQEEPYKLCAICHSLGGAAILMYVITRKIKEKPHRLSRLILL
SPAGFHEDSNLGFTIVEYIFLFISPVLARIVPAFYIPTRFFRMLLNKLAR
DFHNYPALGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPAVSFRVAQ
HLAQIKHTGKFRMYDYGSRSANMEVYGSPEPLDLGESYKFIDVPVDLVAG
RNDKVIRSSMVKKHYNVMRDAEVDVSFNEFEYAHLDFTFSHREELLRYVM
SRLLLVKQTPVQQRQTSQKGMKLKKKKKEGTVV

no DNA




References
    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            

    Title: Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
    Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R and Davis RW <79 more author(s)>
    Ref: Nature, 408:816, 2000 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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