Gene_Locus Report

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Gene_locus Report for: xanca-XCC3164

Xanthomonas campestris pv. campestris str. ATCC 33913(and pv. vesicatoria (strain 85-10)) (and strain B100)pv. raphani 756C , XCC3164 gene

Comment
strain 8004


Relationship
Family|Carb_B_Bacteria
Block| C
Position in NCBI Life Tree|Xanthomonas campestris
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Xanthomonadales: N E > Xanthomonadaceae: N E > Xanthomonas: N E > Xanthomonas campestris: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 5 more: NC_003902, AE012432, CP000050
3 UniProt : Q3BPZ9, B0RPH6, G0CDT1
1 Ncbi-nid : 21229478
1 Ncbi-pid : 21232593
>3 UniProt links 2 more: Q8P618, Q3BPZ9, B0RPH6
>3 Interpro links 2 more: Q8P618, Q3BPZ9, B0RPH6
>3 Prodom links 2 more: Q8P618, Q3BPZ9, B0RPH6
>3 Pfam links 2 more: Q8P618, Q3BPZ9, B0RPH6
>3 PIRSF links 2 more: Q8P618, Q3BPZ9, B0RPH6
>3 SUPERFAM links 2 more: Q8P618, Q3BPZ9, B0RPH6
Sequence
Graphical view for this peptide sequence: xanca-XCC3164
Colored MSA for Carb_B_Bacteria (raw)
MRTRVWMFAASCALAVAGNAAALSPVAPPQVQTDHGPVRGQWQDDGSAVF
RAIPFAAPPLGALRWRPPQPAPAWTEVRDATVAATPCVQPALGWNNAMAK
RGTEDCLYVEVQTPALQPAKPLPVFVWIHGGANVAGGADGHLPTNLVAQD
MLVVTLQYRLGAFGFLSLPELRDGDNAAAGNYALLDQIAALQWVRDNIAQ
FGGDPARVTIAGQSAGGQDVGLLMLSPLARGLFSAAIEQSGTAGFGLPAR
SLQDNRALGVSIAARAGIDDAATRLAQLRALPAERVIQAAQGVDVPALDD
DGYLWLQAVVDGRVLPRAPAALLADGKQAKVPLLIGYVVQELTYGGEQGA
QARVRRDYPAQAHAVLQRQQRAQAKRTAREGSPAVQLSTDLTFRCPAVTV
AQRQAALGAPVWHYVFDTAAPGGQVTHSAELPFLFKGLPIGTPPVNLQRY
WAAFVQGGNPNATGLPAWPAFAPTHAALRFDASGVQPIKDARPATCDGIN
LP
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MRTRVWMFAASCALAVAGNAAALSPVAPPQVQTDHGPVRGQWQDDGSAVF
RAIPFAAPPLGALRWRPPQPAPAWTEVRDATVAATPCVQPALGWNNAMAK
RGTEDCLYVEVQTPALQPAKPLPVFVWIHGGANVAGGADGHLPTNLVAQD
MLVVTLQYRLGAFGFLSLPELRDGDNAAAGNYALLDQIAALQWVRDNIAQ
FGGDPARVTIAGQSAGGQDVGLLMLSPLARGLFSAAIEQSGTAGFGLPAR
SLQDNRALGVSIAARAGIDDAATRLAQLRALPAERVIQAAQGVDVPALDD
DGYLWLQAVVDGRVLPRAPAALLADGKQAKVPLLIGYVVQELTYGGEQGA
QARVRRDYPAQAHAVLQRQQRAQAKRTAREGSPAVQLSTDLTFRCPAVTV
AQRQAALGAPVWHYVFDTAAPGGQVTHSAELPFLFKGLPIGTPPVNLQRY
WAAFVQGGNPNATGLPAWPAFAPTHAALRFDASGVQPIKDARPATCDGIN
LP


References
2 more
    Title: Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris
    Qian W, Jia Y, Ren SX, He YQ, Feng JX, Lu LF, Sun Q, Ying G, Tang DJ and He C <18 more author(s)>
    Ref: Genome Res, 15:757, 2005 : PubMed

            

    Title: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence
    Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Buttner D, Caldana C, Gaigalat L, Goesmann A and Kaiser O <19 more author(s)>
    Ref: Journal of Bacteriology, 187:7254, 2005 : PubMed

            

    Title: Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
    da Silva ACR, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida Jr NF and Kitajima JP <55 more author(s)>
    Ref: Nature, 417:459, 2002 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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