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Visser J

References (27)

Title : Utilization of ferulic acid in Aspergillus niger requires the transcription factor FarA and a newly identified Far-like protein (FarD) that lacks the canonical Zn(II)(2)Cys(6) domain - Arentshorst_2022_Front.Fungal.Biol_3_978845
Author(s) : Arentshorst M , Reijngoud J , van Tol DJC , Reid ID , Arendsen Y , Pel HJ , van Peij N , Visser J , Punt PJ , Tsang A , Ram AFJ
Ref : Front Fungal Biol , 3 :978845 , 2022
Abstract :
PubMedSearch : Arentshorst_2022_Front.Fungal.Biol_3_978845
PubMedID: 37746181
Gene_locus related to this paper: aspng-faeb

Title : Vanillic acid and methoxyhydroquinone production from guaiacyl units and related aromatic compounds using Aspergillus niger cell factories - Lubbers_2021_Microb.Cell.Fact_20_151
Author(s) : Lubbers RJM , Dilokpimol A , Nousiainen PA , Cioc RC , Visser J , Bruijnincx PCA , de Vries RP
Ref : Microb Cell Fact , 20 :151 , 2021
Abstract :
PubMedSearch : Lubbers_2021_Microb.Cell.Fact_20_151
PubMedID: 34344380

Title : Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus - de Vries_2017_Genome.Biol_18_28
Author(s) : de Vries RP , Riley R , Wiebenga A , Aguilar-Osorio G , Amillis S , Uchima CA , Anderluh G , Asadollahi M , Askin M , Barry K , Battaglia E , Bayram O , Benocci T , Braus-Stromeyer SA , Caldana C , Canovas D , Cerqueira GC , Chen F , Chen W , Choi C , Clum A , Dos Santos RA , Damasio AR , Diallinas G , Emri T , Fekete E , Flipphi M , Freyberg S , Gallo A , Gournas C , Habgood R , Hainaut M , Harispe ML , Henrissat B , Hilden KS , Hope R , Hossain A , Karabika E , Karaffa L , Karanyi Z , Krasevec N , Kuo A , Kusch H , LaButti K , Lagendijk EL , Lapidus A , Levasseur A , Lindquist E , Lipzen A , Logrieco AF , Maccabe A , Makela MR , Malavazi I , Melin P , Meyer V , Mielnichuk N , Miskei M , Molnar AP , Mule G , Ngan CY , Orejas M , Orosz E , Ouedraogo JP , Overkamp KM , Park HS , Perrone G , Piumi F , Punt PJ , Ram AF , Ramon A , Rauscher S , Record E , Riano-Pachon DM , Robert V , Rohrig J , Ruller R , Salamov A , Salih NS , Samson RA , Sandor E , Sanguinetti M , Schutze T , Sepcic K , Shelest E , Sherlock G , Sophianopoulou V , Squina FM , Sun H , Susca A , Todd RB , Tsang A , Unkles SE , van de Wiele N , van Rossen-Uffink D , Oliveira JV , Vesth TC , Visser J , Yu JH , Zhou M , Andersen MR , Archer DB , Baker SE , Benoit I , Brakhage AA , Braus GH , Fischer R , Frisvad JC , Goldman GH , Houbraken J , Oakley B , Pocsi I , Scazzocchio C , Seiboth B , vanKuyk PA , Wortman J , Dyer PS , Grigoriev IV
Ref : Genome Biol , 18 :28 , 2017
Abstract :
PubMedSearch : de Vries_2017_Genome.Biol_18_28
PubMedID: 28196534
Gene_locus related to this paper: asptu-a0a1l9nhd0 , aspve-a0a1l9pxx8 , aspve-a0a1l9q4m3 , aspwe-a0a1l9s133 , 9euro-a0a1l9t3v9 , aspwe-a0a1l9rcx6 , aspna-g3y5a6 , aspgl-a0a1l9v4d3 , 9euro-a0a1l9sa36 , aspsb-a0a319eji6 , aspve-a0a1l9px96 , 9euro-a0a1l9tay1 , aspgl-a0a1l9vbc0 , aspc5-a0a1r3rh65 , 9euro-a0a2v5i956 , aspwe-a0a1l9rpp6 , aspna-g3xpw9 , aspve-a0a1l9plv1 , 9euro-a0a1l9tk47 , aspve-a0a1l9pde9 , aspve-a0a1l9pz72 , aspwe-a0a1l9rde6 , 9euro-a0a1l9tdb5 , aspkw-g7xq95 , aspbc-a0a1l9u6h4 , aspbc-a0a1l9u2l4 , asptc-a0a1l9mx83 , aspgl-a0a1l9ve90 , aspve-a0a1l9pvz9 , 9euro-a0a1l9tdh3 , aspc5-a0a1r3rmn9 , aspwe-a0a1l9rlq2 , asptc-a0a1l9nby7 , aspng-a0a100i8t9 , aspc5-a0a1r3rem6 , aspbc-a0a1l9uy89 , aspa1-anee , aspa1-aneh , aspa1-acrc , aspbc-alba , aspa1-acui

Title : The 2008 update of the Aspergillus nidulans genome annotation: a community effort - Wortman_2009_Fungal.Genet.Biol_46 Suppl 1_S2
Author(s) : Wortman JR , Gilsenan JM , Joardar V , Deegan J , Clutterbuck J , Andersen MR , Archer D , Bencina M , Braus G , Coutinho P , von Dohren H , Doonan J , Driessen AJ , Durek P , Espeso E , Fekete E , Flipphi M , Estrada CG , Geysens S , Goldman G , de Groot PW , Hansen K , Harris SD , Heinekamp T , Helmstaedt K , Henrissat B , Hofmann G , Homan T , Horio T , Horiuchi H , James S , Jones M , Karaffa L , Karanyi Z , Kato M , Keller N , Kelly DE , Kiel JA , Kim JM , van der Klei IJ , Klis FM , Kovalchuk A , Krasevec N , Kubicek CP , Liu B , Maccabe A , Meyer V , Mirabito P , Miskei M , Mos M , Mullins J , Nelson DR , Nielsen J , Oakley BR , Osmani SA , Pakula T , Paszewski A , Paulsen I , Pilsyk S , Pocsi I , Punt PJ , Ram AF , Ren Q , Robellet X , Robson G , Seiboth B , van Solingen P , Specht T , Sun J , Taheri-Talesh N , Takeshita N , Ussery D , vanKuyk PA , Visser H , van de Vondervoort PJ , de Vries RP , Walton J , Xiang X , Xiong Y , Zeng AP , Brandt BW , Cornell MJ , van den Hondel CA , Visser J , Oliver SG , Turner G
Ref : Fungal Genet Biol , 46 Suppl 1 :S2 , 2009
Abstract :
PubMedSearch : Wortman_2009_Fungal.Genet.Biol_46 Suppl 1_S2
PubMedID: 19146970
Gene_locus related to this paper: emeni-axe1 , emeni-c8v4m7 , emeni-faec , emeni-ppme1 , emeni-q5ara9 , emeni-q5arf0 , emeni-q5as30 , emeni-q5ase8 , emeni-q5av79 , emeni-q5aw09 , emeni-q5awc3 , emeni-q5awc7 , emeni-q5awu9 , emeni-q5aww4 , emeni-q5ax50 , emeni-q5ay37 , emeni-q5ay57 , emeni-q5ay59 , emeni-q5ayk9 , emeni-q5ays5 , emeni-q5az32 , emeni-q5az91 , emeni-q5az97 , emeni-q5azp1 , emeni-q5b0i6 , emeni-q5b1h2 , emeni-q5b2a9 , emeni-q5b2p7 , emeni-q5b3d2 , emeni-q5b4q7 , emeni-q5b5u7 , emeni-q5b5y4 , emeni-q5b9e7 , emeni-q5b9i0 , emeni-q5b364 , emeni-q5b446 , emeni-q5b938 , emeni-q5ba78 , emeni-q5bcd1 , emeni-q5bcd2 , emeni-q5bde7 , emeni-q5bdr0 , emeni-q5bf92 , emeni-q7si80 , emeni-q5bdv9 , emeni-c8vu15 , 9euro-a0a3d8t644 , emeni-q5b719 , emeni-q5ax97 , emeni-tdia , emeni-afoc , emeni-dbae

Title : Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 - Pel_2007_Nat.Biotechnol_25_221
Author(s) : Pel HJ , de Winde JH , Archer DB , Dyer PS , Hofmann G , Schaap PJ , Turner G , de Vries RP , Albang R , Albermann K , Andersen MR , Bendtsen JD , Benen JA , van den Berg M , Breestraat S , Caddick MX , Contreras R , Cornell M , Coutinho PM , Danchin EG , Debets AJ , Dekker P , van Dijck PW , van Dijk A , Dijkhuizen L , Driessen AJ , d'Enfert C , Geysens S , Goosen C , Groot GS , de Groot PW , Guillemette T , Henrissat B , Herweijer M , van den Hombergh JP , van den Hondel CA , van der Heijden RT , van der Kaaij RM , Klis FM , Kools HJ , Kubicek CP , van Kuyk PA , Lauber J , Lu X , van der Maarel MJ , Meulenberg R , Menke H , Mortimer MA , Nielsen J , Oliver SG , Olsthoorn M , Pal K , van Peij NN , Ram AF , Rinas U , Roubos JA , Sagt CM , Schmoll M , Sun J , Ussery D , Varga J , Vervecken W , van de Vondervoort PJ , Wedler H , Wosten HA , Zeng AP , van Ooyen AJ , Visser J , Stam H
Ref : Nat Biotechnol , 25 :221 , 2007
Abstract :
PubMedSearch : Pel_2007_Nat.Biotechnol_25_221
PubMedID: 17259976
Gene_locus related to this paper: aspna-g3yal2 , aspnc-a2q8r7 , aspnc-a2q814 , aspnc-a2qb93 , aspnc-a2qbd3 , aspnc-a2qbh3 , aspnc-a2qbx7 , aspnc-a2qdj6 , aspnc-a2qe77 , aspnc-a2qf54 , aspnc-a2qfe9 , aspnc-a2qg33 , aspnc-a2qgj6 , aspnc-a2qgm6 , aspnc-a2qh52 , aspnc-a2qh76 , aspnc-a2qh85 , aspnc-a2qhe2 , aspnc-a2qi32 , aspnc-a2qib2 , aspnc-a2qk14 , aspnc-a2ql23 , aspnc-a2ql89 , aspnc-a2ql90 , aspnc-a2qla0 , aspnc-a2qlz0 , aspnc-a2qm14 , aspnc-a2qmk5 , aspnc-a2qms0 , aspnc-a2qn29 , aspnc-a2qn56 , aspnc-a2qn70 , aspnc-a2qnw9 , aspnc-a2qr21 , aspnc-a2qs22 , aspnc-a2qt50 , aspnc-a2qti9 , aspnc-a2qtz0 , aspnc-a2quc1 , aspnc-a2qw06 , aspnc-a2qwz6 , aspnc-a2qx92 , aspnc-a2qyf0 , aspnc-a2qys7 , aspnc-a2qz72 , aspnc-a2qzn6 , aspnc-a2qzr0 , aspnc-a2qzs1 , aspnc-a2qzx0 , aspnc-a2qzx4 , aspnc-a2r0p4 , aspnc-a2r0u0 , aspnc-a2r1p3 , aspnc-a2r1r5 , aspnc-a2r2i5 , aspnc-a2r2l0 , aspnc-a2r3s8 , aspnc-a2r4c0 , aspnc-a2r4j8 , aspnc-a2r5r4 , aspnc-a2r6g3 , aspnc-a2r6h5 , aspnc-a2r6h8 , aspnc-a2r7q1 , aspnc-a2r8r3 , aspnc-a2r8z3 , aspnc-a2r9y8 , aspnc-a2r032 , aspnc-a2r040 , aspnc-a2r273 , aspnc-a2r496 , aspnc-a2r502 , aspnc-a2ra07 , aspnc-a2rap4 , aspnc-a2raq2 , aspnc-a2rav1 , aspnc-a5aaf4 , aspnc-a5ab63 , aspnc-a5abc6 , aspnc-a5abe5 , aspnc-a5abe8 , aspnc-a5abf0 , aspnc-a5abh9 , aspnc-a5abk1 , aspnc-a5abt2 , aspnc-a5abz1 , aspnc-atg15 , aspnc-axe1 , aspnc-cuti1 , aspnc-cuti2 , aspnc-faec , aspng-a2q8w0 , aspng-a2qs46 , aspng-a2qst4 , aspng-a2qv27 , aspng-a2qzk9 , aspng-a2r0p8 , aspng-a2r225 , aspng-DAPB , aspng-DPP5 , aspng-faeb , aspni-APSC , aspni-EstA , aspni-FAEA , aspni-PAPA , aspkw-g7y0v7 , aspnc-a2qt47 , aspnc-a2qt66 , aspnc-a2r199 , aspnc-a2r871 , aspnc-a2qbp6 , aspnc-a2qqa1 , aspnc-a2qt70 , aspna-g3y5a6 , aspna-g3xpw9 , aspnc-a2qw57 , aspaw-a0a401kcz4 , aspna-alba , aspnc-kex1 , aspnc-cbpya , aspnc-a2qbg8

Title : Isolation and characterization of two specific regulatory Aspergillus niger mutants shows antagonistic regulation of arabinan and xylan metabolism - de Groot_2003_Microbiology_149_1183
Author(s) : de Groot MJ , van de Vondervoort PJ , de Vries RP , vanKuyk PA , Ruijter GJ , Visser J
Ref : Microbiology , 149 :1183 , 2003
Abstract :
PubMedSearch : de Groot_2003_Microbiology_149_1183
PubMedID: 12724380

Title : Glycerol dehydrogenase, encoded by gldB is essential for osmotolerance in Aspergillus nidulans - de Vries_2003_Mol.Microbiol_49_131
Author(s) : de Vries RP , Flitter SJ , van de Vondervoort PJ , Chaveroche MK , Fontaine T , Fillinger S , Ruijter GJ , d'Enfert C , Visser J
Ref : Molecular Microbiology , 49 :131 , 2003
Abstract :
PubMedSearch : de Vries_2003_Mol.Microbiol_49_131
PubMedID: 12823816

Title : Mannitol is required for stress tolerance in Aspergillus niger conidiospores - Ruijter_2003_Eukaryot.Cell_2_690
Author(s) : Ruijter GJ , Bax M , Patel H , Flitter SJ , van de Vondervoort PJ , de Vries RP , vanKuyk PA , Visser J
Ref : Eukaryot Cell , 2 :690 , 2003
Abstract :
PubMedSearch : Ruijter_2003_Eukaryot.Cell_2_690
PubMedID: 12912888

Title : The Aspergillus niger faeB gene encodes a second feruloyl esterase involved in pectin and xylan degradation and is specifically induced in the presence of aromatic compounds - de Vries_2002_Biochem.J_363_377
Author(s) : de Vries RP , vanKuyk PA , Kester HC , Visser J
Ref : Biochemical Journal , 363 :377 , 2002
Abstract :
PubMedSearch : de Vries_2002_Biochem.J_363_377
PubMedID: 11931668
Gene_locus related to this paper: aspng-faeb

Title : Expression profiling of pectinolytic genes from Aspergillus niger - de Vries_2002_FEBS.Lett_530_41
Author(s) : de Vries RP , Jansen J , Aguilar G , Parenicova L , Joosten V , Wulfert F , Benen JA , Visser J
Ref : FEBS Letters , 530 :41 , 2002
Abstract :
PubMedSearch : de Vries_2002_FEBS.Lett_530_41
PubMedID: 12387863

Title : The beta-1,4-endogalactanase A gene from Aspergillus niger is specifically induced on arabinose and galacturonic acid and plays an important role in the degradation of pectic hairy regions - De Vries_2002_Eur.J.Biochem_269_4985
Author(s) : de Vries RP , Parenicova L , Hinz SW , Kester HC , Beldman G , Benen JA , Visser J
Ref : European Journal of Biochemistry , 269 :4985 , 2002
Abstract :
PubMedSearch : De Vries_2002_Eur.J.Biochem_269_4985
PubMedID: 12383257

Title : Regulation of the alpha-glucuronidase-encoding gene ( aguA) from Aspergillus niger - de Vries_2002_Mol.Genet.Genomics_268_96
Author(s) : de Vries RP , van de Vondervoort PJ , Hendriks L , van de Belt M , Visser J
Ref : Mol Genet Genomics , 268 :96 , 2002
Abstract :
PubMedSearch : de Vries_2002_Mol.Genet.Genomics_268_96
PubMedID: 12242504

Title : The Aspergillus niger D-xylulose kinase gene is co-expressed with genes encoding arabinan degrading enzymes, and is essential for growth on D-xylose and L-arabinose - vanKuyk_2001_Eur.J.Biochem_268_5414
Author(s) : vanKuyk PA , de Groot MJ , Ruijter GJ , de Vries RP , Visser J
Ref : European Journal of Biochemistry , 268 :5414 , 2001
Abstract :
PubMedSearch : vanKuyk_2001_Eur.J.Biochem_268_5414
PubMedID: 11606204

Title : Cloning and characterization of Aspergillus niger genes encoding an alpha-galactosidase and a beta-mannosidase involved in galactomannan degradation - Ademark_2001_Eur.J.Biochem_268_2982
Author(s) : Ademark P , de Vries RP , Hagglund P , Stalbrand H , Visser J
Ref : European Journal of Biochemistry , 268 :2982 , 2001
Abstract :
PubMedSearch : Ademark_2001_Eur.J.Biochem_268_2982
PubMedID: 11358516

Title : Aspergillus enzymes involved in degradation of plant cell wall polysaccharides - de Vries_2001_Microbiol.Mol.Biol.Rev_65_497
Author(s) : de Vries RP , Visser J
Ref : Microbiol Mol Biol Rev , 65 :497 , 2001
Abstract :
PubMedSearch : de Vries_2001_Microbiol.Mol.Biol.Rev_65_497
PubMedID: 11729262

Title : Synergy between enzymes from Aspergillus involved in the degradation of plant cell wall polysaccharides - de Vries_2000_Carbohydr.Res_327_401
Author(s) : de Vries RP , Kester HC , Poulsen CH , Benen JA , Visser J
Ref : Carbohydr Res , 327 :401 , 2000
Abstract :
PubMedSearch : de Vries_2000_Carbohydr.Res_327_401
PubMedID: 10990025

Title : Inverting character of alpha-glucuronidase A from Aspergillus tubingensis - Biely_2000_Biochim.Biophys.Acta_1474_360
Author(s) : Biely P , de Vries RP , Vrsanska M , Visser J
Ref : Biochimica & Biophysica Acta , 1474 :360 , 2000
Abstract :
PubMedSearch : Biely_2000_Biochim.Biophys.Acta_1474_360
PubMedID: 10779688

Title : Differential expression of three alpha-galactosidase genes and a single beta-galactosidase gene from Aspergillus niger - de Vries_1999_Appl.Environ.Microbiol_65_2453
Author(s) : de Vries RP , van den Broeck HC , Dekkers E , Manzanares P , De Graaff LH , Visser J
Ref : Applied Environmental Microbiology , 65 :2453 , 1999
Abstract :
PubMedSearch : de Vries_1999_Appl.Environ.Microbiol_65_2453
PubMedID: 10347026

Title : Regulation of the feruloyl esterase (faeA) gene from Aspergillus niger - de Vries_1999_Appl.Environ.Microbiol_65_5500
Author(s) : de Vries RP , Visser J
Ref : Applied Environmental Microbiology , 65 :5500 , 1999
Abstract :
PubMedSearch : de Vries_1999_Appl.Environ.Microbiol_65_5500
PubMedID: 10584009

Title : CreA modulates the XlnR-induced expression on xylose of Aspergillus niger genes involved in xylan degradation - de Vries_1999_Res.Microbiol_150_281
Author(s) : de Vries RP , Visser J , De Graaff LH
Ref : Res Microbiol , 150 :281 , 1999
Abstract :
PubMedSearch : de Vries_1999_Res.Microbiol_150_281
PubMedID: 10376490

Title : The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger - van Peij_1998_Appl.Environ.Microbiol_64_3615
Author(s) : van Peij NN , Gielkens MM , de Vries RP , Visser J , De Graaff LH
Ref : Applied Environmental Microbiology , 64 :3615 , 1998
Abstract :
PubMedSearch : van Peij_1998_Appl.Environ.Microbiol_64_3615
PubMedID: 9758775

Title : Stability of feruloyl esterases from Aspergillus -
Author(s) : Faulds CB , de Vries RP , Visser J , Williamson G
Ref : Biochemical Society Transactions , 26 :S165 , 1998
PubMedID: 9649840

Title : aguA, the gene encoding an extracellular alpha-glucuronidase from Aspergillus tubingensis, is specifically induced on xylose and not on glucuronic acid - de Vries_1998_J.Bacteriol_180_243
Author(s) : de Vries RP , Poulsen CH , Madrid S , Visser J
Ref : Journal of Bacteriology , 180 :243 , 1998
Abstract :
PubMedSearch : de Vries_1998_J.Bacteriol_180_243
PubMedID: 9440512

Title : The faeA genes from Aspergillus niger and Aspergillus tubingensis encode ferulic acid esterases involved in degradation of complex cell wall polysaccharides - de Vries_1997_Appl.Environ.Microbiol_63_4638
Author(s) : de Vries RP , Michelsen B , Poulsen CH , Kroon PA , van den Heuvel RH , Faulds CB , Williamson G , van den Hombergh JP , Visser J
Ref : Applied Environmental Microbiology , 63 :4638 , 1997
Abstract :
PubMedSearch : de Vries_1997_Appl.Environ.Microbiol_63_4638
PubMedID: 9406381
Gene_locus related to this paper: aspni-FAEA , asptu-FAEA

Title : Influence of ferulic acid on the production of feruloyl esterases by Aspergillus niger - Faulds_1997_FEMS.Microbiol.Lett_157_239
Author(s) : Faulds CB , de Vries RP , Kroon PA , Visser J , Williamson G
Ref : FEMS Microbiology Letters , 157 :239 , 1997
Abstract :
PubMedSearch : Faulds_1997_FEMS.Microbiol.Lett_157_239
PubMedID: 9435103

Title : Cloning, characterization and expression of pepF, a gene encoding a serine carboxypeptidase from Aspergillus niger - van den Hombergh_1994_Gene_151_73
Author(s) : van den Hombergh JP , Jarai G , Buxton FP , Visser J
Ref : Gene , 151 :73 , 1994
Abstract :
PubMedSearch : van den Hombergh_1994_Gene_151_73
PubMedID: 7828908
Gene_locus related to this paper: aspng-pepf

Title : Characterization of an Aspergillus nidulans L-arabitol dehydrogenase mutant - de Vries_1994_FEMS.Microbiol.Lett_123_83
Author(s) : de Vries RP , Flipphi MJ , Witteveen CF , Visser J
Ref : FEMS Microbiology Letters , 123 :83 , 1994
Abstract :
PubMedSearch : de Vries_1994_FEMS.Microbiol.Lett_123_83
PubMedID: 7988903