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Gene_locus Report for: arath-F1P2.110

Arabidopsis thaliana (Mouse-ear cress). hypothetical protein f1p2.110 (at3g47560)

Comment
AY086613 Q8LCG1 only 3 aa diff


Relationship
Family|AlphaBeta_hydrolase
Block| X
Position in NCBI Life Tree|Arabidopsis thaliana
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 2 more: AL132955, AY086613, AY128311
2 UniProt : Q9SN82, Q8L7R4
1 Ncbi-nid : 6434210
2 Ncbi-pid : 4191785, 6522539
3 UniProt : Q8LCG1, Q8L7R4, Q9SN82
3 Interpro : Q8LCG1, Q8L7R4, Q9SN82
3 Pfam : Q8LCG1, Q8L7R4, Q9SN82
3 PIRSF : Q8LCG1, Q8L7R4, Q9SN82
3 SUPERFAM : Q8LCG1, Q8L7R4, Q9SN82
1 Tair database : AT3G47560
Sequence
Peptide
Graphical view for this peptide sequence: arath-F1P2.110
Colored MSA for AlphaBeta_hydrolase (raw) 
MDSSQGSTQQKIVILNSHNENLVGLLHETGSTEIVVLCHGFRSNKNFEIM
KNVAVAIEREGISAFRFDFSGNGESEGSFYYGNYNYEADDLHSVIQYFSN
LNRVVTIILGHSKGGDVVLLYASKYHDIPNVINLSGRYDLKKGIGERLGE
DFLERIKQQGYIDVKDGDSGYRVTEESLMDRLNTDMHEACLKIDKECRVL
TVHGSGDETVPVEDAKEFAKIIPNHELQIVEGADHCYTNYQSQLVLTVME
FIKSHCEEKNDKTCN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
MDSSQGSTQQKIVILNSHNENLVGLLHETGSTEIVVLCHGFRSNKNFEIM
KNVAVAIEREGISAFRFDFSGNGESEGSFYYGNYNYEADDLHSVIQYFSN
LNRVVTIILGHSKGGDVVLLYASKYHDIPNVINLSGRYDLKKGIGERLGE
DFLERIKQQGYIDVKDGDSGYRVTEESLMDRLNTDMHEACLKIDKECRVL
TVHGSGDETVPVEDAKEFAKIIPNHELQIVEGADHCYTNYQSQLVLTVME
FIKSHCEEKNDKTCN

References
    Title: Features of Arabidopsis genes and genome discovered using full-length cDNAs
    Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, Feldmann KA
    Ref: Plant Mol Biol, 60:69, 2006 : PubMed

            

    Title: Full-length messenger RNA sequences greatly improve genome annotation
    Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL
    Ref: Genome Biol, 3:RESEARCH0029, 2002 : PubMed

            

    Title: Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana
    Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Blocker H, Perez-Alonso M and Tabata S <127 more author(s)>
    Ref: Nature, 408:820, 2000 : PubMed

            


Other Papers

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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