Gene_Locus Report

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Gene_locus Report for: orysa-Q6H8G1

Oryza sativa subsp. indica subsp. japonica (Rice) lipase-like protein putative defective in anther dehiscence1

Relationship
Family|Plant_phospholipase
Block| L
Position in NCBI Life Tree|Oryza sativa
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AP002485, AJ307662
3 UniProt : Q6H8G1, A2X7W8, Q949E1
3 UniProt : Q6H8G1, Q949E1, A2X7W8
3 Interpro : Q6H8G1, Q949E1, A2X7W8
3 Pfam : Q6H8G1, Q949E1, A2X7W8
3 PIRSF : Q6H8G1, Q949E1, A2X7W8
3 SUPERFAM : Q6H8G1, Q949E1, A2X7W8
Sequence
Graphical view for this peptide sequence: orysa-Q6H8G1
Colored MSA for Plant_phospholipase (raw)
MPIAAAAVTSPPAAAQVHGVVPRHASPTPQQRAAPRREQSPLNPSSQSIR
SASSGTELAGSAATEASRAHIANLDRVLGKPPQVPRPASHAAASKQERQQ
QDGELEPLNVRHGLLNALNLSFFVPMPGMRARTAADEHMSPRSLMHMQQL
LSADSPRASPRSTIAPRWRSLHGEDGWAGLLDPLDSDLRRELLRYGDFVQ
AAYQAFHSLPTASARHRGLMLPDRSYRPTRSLFATSALSMPPWAKRPNTP
EWLTQQSNWIGYVAVCESEREVARMGRRDIAIVLRGTATCLEWAENLRAS
LVPLDGESGEGGGQEEPKVARGFRSLYKTAGEKVKSLSEEVMGEVRRLME
KYKGEELSITVVGHSLGGALALLVADEIATTVPDAPPVAVVSFGGPKVGN
AAFVDKLQKSGRVNVLRIVNAGDMVTKVPGVAPRLPLTKEQYQHVGAELR
IDSKNSPCLRPDAGPACRHDLEAYLHLIDGFTGTGRPFRHDARRSVIRLL
QLQRGNVKKEYVNRARELGVDPSAPVDVGRSMAYGNCAVASPSS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MPIAAAAVTSPPAAAQVHGVVPRHASPTPQQRAAPRREQSPLNPSSQSIR
SASSGTELAGSAATEASRAHIANLDRVLGKPPQVPRPASHAAASKQERQQ
QDGELEPLNVRHGLLNALNLSFFVPMPGMRARTAADEHMSPRSLMHMQQL
LSADSPRASPRSTIAPRWRSLHGEDGWAGLLDPLDSDLRRELLRYGDFVQ
AAYQAFHSLPTASARHRGLMLPDRSYRPTRSLFATSALSMPPWAKRPNTP
EWLTQQSNWIGYVAVCESEREVARMGRRDIAIVLRGTATCLEWAENLRAS
LVPLDGESGEGGGQEEPKVARGFRSLYKTAGEKVKSLSEEVMGEVRRLME
KYKGEELSITVVGHSLGGALALLVADEIATTVPDAPPVAVVSFGGPKVGN
AAFVDKLQKSGRVNVLRIVNAGDMVTKVPGVAPRLPLTKEQYQHVGAELR
IDSKNSPCLRPDAGPACRHDLEAYLHLIDGFTGTGRPFRHDARRSVIRLL
QLQRGNVKKEYVNRARELGVDPSAPVDVGRSMAYGNCAVASPSS


References
2 more
    Title: The Genomes of Oryza sativa: a history of duplications
    Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S and Yang H <88 more author(s)>
    Ref: PLoS Biol, 3:e38, 2005 : PubMed

            

    Title: Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
    Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H and Yasunishi A <64 more author(s)>
    Ref: Science, 301:376, 2003 : PubMed

            

    Title: Conservation of microstructure between a sequenced region of the genome of rice and multiple segments of the genome of Arabidopsis thaliana
    Mayer K, Murphy G, Tarchini R, Wambutt R, Volckaert G, Pohl T, Dusterhoft A, Stiekema W, Entian KD and Bancroft I <8 more author(s)>
    Ref: Genome Res, 11:1167, 2001 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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