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Gene_locus Report for: ratno-d4aa05

Rattus norvegicus (Rat) Putative uncharacterized protein LOC679817

Relationship
Family|Carb_B_Chordata
Block| C
Position in NCBI Life Tree|Rattus norvegicus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Sarcopterygii: N E > Dipnotetrapodomorpha: N E > Tetrapoda: N E > Amniota: N E > Mammalia: N E > Theria: N E > Eutheria: N E > Boreoeutheria: N E > Euarchontoglires: N E > Glires: N E > Rodentia: N E > Myomorpha: N E > Muroidea: N E > Muridae: N E > Murinae: N E > Rattus: N E > Rattus norvegicus: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 UniProt : D4AA05
1 UniProt : D4AA05
1 Interpro : D4AA05
1 Pfam : D4AA05
1 PIRSF : D4AA05
1 SUPERFAM : D4AA05
Sequence
Graphical view for this peptide sequence: ratno-d4aa05
Colored MSA for Carb_B_Chordata (raw)
MWLFALALTSLNTYMAFGHPSSPPVVDTLQGKVLGKYISLEGFTQPVAVF
LGVPFAKPPLGSLRFAPPQPAESWSFVKNATSYPPMCSQITGVGPVLSEV
FTNQLENVPLEYSEDCLYLNIYSPTDLTSKDRLPVMVWVHGGGLLSGGAS
TFDGLALSTHEKVVVVVIQYRLGIWGFLSTGDEHSRGNWGHFDQVAALQW
VQNNIVNFGGDPNSVTLFGESAGGESVSVLVLSPLTKNLFHRAISESGVA
LTPCLFRENTRLAAEQVAIATGCAATTSADIVRCLREKTEEELLATTLKM
KFFALDLHGDPRESYPFLTTVIDGVLLPKAPEEILSEKNFNTVPYIVGIN
KQEFGWFIPTMMGYPLSESKLDQKTATSLLWKSYPLTNISKELTPVATEK
YLGGSDCPDKKKDLFLDMMGDVLFAVPSVIVARYHRDARATTYVYEFKYH
PSFVSDMRPKTVIADHGDEVYSVWGTPFLKEGASEEEINLSTMMMKFWGN
FARNGNPNGEGLPHWPEYDEKESYLQIGTTIQQAQKLKYKEVAFWTGLRG
MEVEEATEEDTQK
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MWLFALALTSLNTYMAFGHPSSPPVVDTLQGKVLGKYISLEGFTQPVAVF
LGVPFAKPPLGSLRFAPPQPAESWSFVKNATSYPPMCSQITGVGPVLSEV
FTNQLENVPLEYSEDCLYLNIYSPTDLTSKDRLPVMVWVHGGGLLSGGAS
TFDGLALSTHEKVVVVVIQYRLGIWGFLSTGDEHSRGNWGHFDQVAALQW
VQNNIVNFGGDPNSVTLFGESAGGESVSVLVLSPLTKNLFHRAISESGVA
LTPCLFRENTRLAAEQVAIATGCAATTSADIVRCLREKTEEELLATTLKM
KFFALDLHGDPRESYPFLTTVIDGVLLPKAPEEILSEKNFNTVPYIVGIN
KQEFGWFIPTMMGYPLSESKLDQKTATSLLWKSYPLTNISKELTPVATEK
YLGGSDCPDKKKDLFLDMMGDVLFAVPSVIVARYHRDARATTYVYEFKYH
PSFVSDMRPKTVIADHGDEVYSVWGTPFLKEGASEEEINLSTMMMKFWGN
FARNGNPNGEGLPHWPEYDEKESYLQIGTTIQQAQKLKYKEVAFWTGLRG
MEVEEATEEDTQK


Reference
    Title: Genome sequence of the Brown Norway rat yields insights into mammalian evolution
    Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC and Collins F <218 more author(s)>
    Ref: Nature, 428:493, 2004 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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