Title : Whole genome sequence of the Treponema pallidum subsp. endemicum strain Bosnia A: the genome is related to yaws treponemes but contains few loci similar to syphilis treponemes - Staudova_2014_PLoS.Negl.Trop.Dis_8_e3261 |
Author(s) : Staudova B , Strouhal M , Zobanikova M , Cejkova D , Fulton LL , Chen L , Giacani L , Centurion-Lara A , Bruisten SM , Sodergren E , Weinstock GM , Smajs D |
Ref : PLoS Negl Trop Dis , 8 :e3261 , 2014 |
Abstract : |
PubMedSearch : Staudova_2014_PLoS.Negl.Trop.Dis_8_e3261 |
PubMedID: 25375929 |
Gene_locus related to this paper: trepa-TP0902 |
Title : Phylogenomics and the dynamic genome evolution of the genus Streptococcus - Richards_2014_Genome.Biol.Evol_6_741 |
Author(s) : Richards VP , Palmer SR , Pavinski Bitar PD , Qin X , Weinstock GM , Highlander SK , Town CD , Burne RA , Stanhope MJ |
Ref : Genome Biol Evol , 6 :741 , 2014 |
Abstract : |
PubMedSearch : Richards_2014_Genome.Biol.Evol_6_741 |
PubMedID: 24625962 |
Gene_locus related to this paper: strpo-f3l7j8 , 9stre-g5k932 , 9stre-g5ki10 |
Title : Propionibacterium acnes strain populations in the human skin microbiome associated with acne - Fitz-Gibbon_2013_J.Invest.Dermatol_133_2152 |
Author(s) : Fitz-Gibbon S , Tomida S , Chiu BH , Nguyen L , Du C , Liu M , Elashoff D , Erfe MC , Loncaric A , Kim J , Modlin RL , Miller JF , Sodergren E , Craft N , Weinstock GM , Li H |
Ref : Journal of Investigative Dermatology , 133 :2152 , 2013 |
Abstract : |
PubMedSearch : Fitz-Gibbon_2013_J.Invest.Dermatol_133_2152 |
PubMedID: 23337890 |
Gene_locus related to this paper: proac-q6a5t3 , proac-q6a981 |
Title : Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2\% of the genome sequence - Cejkova_2012_PLoS.Negl.Trop.Dis_6_e1471 |
Author(s) : Cejkova D , Zobanikova M , Chen L , Pospisilova P , Strouhal M , Qin X , Mikalova L , Norris SJ , Muzny DM , Gibbs RA , Fulton LL , Sodergren E , Weinstock GM , Smajs D |
Ref : PLoS Negl Trop Dis , 6 :e1471 , 2012 |
Abstract : |
PubMedSearch : Cejkova_2012_PLoS.Negl.Trop.Dis_6_e1471 |
PubMedID: 22292095 |
Gene_locus related to this paper: trepa-TP0902 |
Title : Complete genome sequence of Treponema paraluiscuniculi, strain Cuniculi A: the loss of infectivity to humans is associated with genome decay - Smajs_2011_PLoS.One_6_e20415 |
Author(s) : Smajs D , Zobanikova M , Strouhal M , Cejkova D , Dugan-Rocha S , Pospisilova P , Norris SJ , Albert T , Qin X , Hallsworth-Pepin K , Buhay C , Muzny DM , Chen L , Gibbs RA , Weinstock GM |
Ref : PLoS ONE , 6 :e20415 , 2011 |
Abstract : |
PubMedSearch : Smajs_2011_PLoS.One_6_e20415 |
PubMedID: 21655244 |
Gene_locus related to this paper: trepa-TP0902 |
Title : Genome sequence of the emerging pathogen Helicobacter canadensis - Loman_2009_J.Bacteriol_191_5566 |
Author(s) : Loman NJ , Snyder LA , Linton JD , Langdon R , Lawson AJ , Weinstock GM , Wren BW , Pallen MJ |
Ref : Journal of Bacteriology , 191 :5566 , 2009 |
Abstract : |
PubMedSearch : Loman_2009_J.Bacteriol_191_5566 |
PubMedID: 19542273 |
Gene_locus related to this paper: 9heli-c5zyn0 , 9heli-c5zy65 |
Title : The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse - Durfee_2008_J.Bacteriol_190_2597 |
Author(s) : Durfee T , Nelson R , Baldwin S , Plunkett G, 3rd , Burland V , Mau B , Petrosino JF , Qin X , Muzny DM , Ayele M , Gibbs RA , Csorgo B , Posfai G , Weinstock GM , Blattner FR |
Ref : Journal of Bacteriology , 190 :2597 , 2008 |
Abstract : |
PubMedSearch : Durfee_2008_J.Bacteriol_190_2597 |
PubMedID: 18245285 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR |
Title : Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays - Matejkova_2008_BMC.Microbiol_8_76 |
Author(s) : Matejkova P , Strouhal M , Smajs D , Norris SJ , Palzkill T , Petrosino JF , Sodergren E , Norton JE , Singh J , Richmond TA , Molla MN , Albert TJ , Weinstock GM |
Ref : BMC Microbiol , 8 :76 , 2008 |
Abstract : |
PubMedSearch : Matejkova_2008_BMC.Microbiol_8_76 |
PubMedID: 18482458 |
Gene_locus related to this paper: trepa-naptd , trepa-TP0902 |
Title : Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF - Bourgogne_2008_Genome.Biol_9_R110 |
Author(s) : Bourgogne A , Garsin DA , Qin X , Singh KV , Sillanpaa J , Yerrapragada S , Ding Y , Dugan-Rocha S , Buhay C , Shen H , Chen G , Williams G , Muzny D , Maadani A , Fox KA , Gioia J , Chen L , Shang Y , Arias CA , Nallapareddy SR , Zhao M , Prakash VP , Chowdhury S , Jiang H , Gibbs RA , Murray BE , Highlander SK , Weinstock GM |
Ref : Genome Biol , 9 :R110 , 2008 |
Abstract : |
PubMedSearch : Bourgogne_2008_Genome.Biol_9_R110 |
PubMedID: 18611278 |
Gene_locus related to this paper: entfa-EF0101 , entfa-EF0449 , entfa-EF1236 , entfa-EF2618 , entfa-q5j1l4 , entfl-e2z7d4 |
Title : Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032 - Gioia_2007_PLoS.One_2_e928 |
Author(s) : Gioia J , Yerrapragada S , Qin X , Jiang H , Igboeli OC , Muzny D , Dugan-Rocha S , Ding Y , Hawes A , Liu W , Perez L , Kovar C , Dinh H , Lee S , Nazareth L , Blyth P , Holder M , Buhay C , Tirumalai MR , Liu Y , Dasgupta I , Bokhetache L , Fujita M , Karouia F , Eswara Moorthy P , Siefert J , Uzman A , Buzumbo P , Verma A , Zwiya H , McWilliams BD , Olowu A , Clinkenbeard KD , Newcombe D , Golebiewski L , Petrosino JF , Nicholson WL , Fox GE , Venkateswaran K , Highlander SK , Weinstock GM |
Ref : PLoS ONE , 2 :e928 , 2007 |
Abstract : |
PubMedSearch : Gioia_2007_PLoS.One_2_e928 |
PubMedID: 17895969 |
Gene_locus related to this paper: bacp2-a8f9m3 , bacp2-a8fa85 , bacp2-a8fgk8 , bacp2-a8fhg9 , bacp2-a8fjc9 , bacpu-AXE , bacpu-b4af62 , bacpu-b4ail3 , bacpu-b4ann4 , bacpu-b4apa9 , bacp2-a8f983 , bacp2-a8fgz0 |
Title : The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny - Gioia_2006_J.Bacteriol_188_7257 |
Author(s) : Gioia J , Qin X , Jiang H , Clinkenbeard K , Lo R , Liu Y , Fox GE , Yerrapragada S , McLeod MP , McNeill TZ , Hemphill L , Sodergren E , Wang Q , Muzny DM , Homsi FJ , Weinstock GM , Highlander SK |
Ref : Journal of Bacteriology , 188 :7257 , 2006 |
Abstract : |
PubMedSearch : Gioia_2006_J.Bacteriol_188_7257 |
PubMedID: 17015664 |
Gene_locus related to this paper: pasha-a7jrr2 , pasha-a7js08 , pasha-a7jsd4 , pasha-a7jsj9 , pasha-a7ju47 , pasmu-q9cjt9 |
Title : Insights into social insects from the genome of the honeybee Apis mellifera - Weinstock_2006_Nature_443_931 |
Author(s) : Weinstock GM , Consortium HGS |
Ref : Nature , 443 :931 , 2006 |
Abstract : |
PubMedSearch : Weinstock_2006_Nature_443_931 |
PubMedID: 17073008 |
Gene_locus related to this paper: apime-b2d0j5 , apime-vcp , apime-vdpp4 |
Title : Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence - Petrosino_2006_J.Bacteriol_188_6977 |
Author(s) : Petrosino JF , Xiang Q , Karpathy SE , Jiang H , Yerrapragada S , Liu Y , Gioia J , Hemphill L , Gonzalez A , Raghavan TM , Uzman A , Fox GE , Highlander S , Reichard M , Morton RJ , Clinkenbeard KD , Weinstock GM |
Ref : Journal of Bacteriology , 188 :6977 , 2006 |
Abstract : |
PubMedSearch : Petrosino_2006_J.Bacteriol_188_6977 |
PubMedID: 16980500 |
Gene_locus related to this paper: fratt-q5ng35 , fratt-q5nga8 , fratt-q5ngu5 , fratu-q7wvf7 |
Title : Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes - Seshadri_2004_Proc.Natl.Acad.Sci.U.S.A_101_5646 |
Author(s) : Seshadri R , Myers GS , Tettelin H , Eisen JA , Heidelberg JF , Dodson RJ , Davidsen TM , DeBoy RT , Fouts DE , Haft DH , Selengut J , Ren Q , Brinkac LM , Madupu R , Kolonay J , Durkin SA , Daugherty SC , Shetty J , Shvartsbeyn A , Gebregeorgis E , Geer K , Tsegaye G , Malek J , Ayodeji B , Shatsman S , McLeod MP , Smajs D , Howell JK , Pal S , Amin A , Vashisth P , McNeill TZ , Xiang Q , Sodergren E , Baca E , Weinstock GM , Norris SJ , Fraser CM , Paulsen IT |
Ref : Proc Natl Acad Sci U S A , 101 :5646 , 2004 |
Abstract : |
PubMedSearch : Seshadri_2004_Proc.Natl.Acad.Sci.U.S.A_101_5646 |
PubMedID: 15064399 |
Gene_locus related to this paper: trede-q73j01 , trede-q73kf5 , trede-q73kp3 , trede-q73ks1 , trede-q73nf8 , trede-q73qt5 , trede-q73qv0 , trede-q73ra4 , trede-q73ri8 , trede-Q93EK3 , trede-TDE0521 |
Title : Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae - McLeod_2004_J.Bacteriol_186_5842 |
Author(s) : McLeod MP , Qin X , Karpathy SE , Gioia J , Highlander SK , Fox GE , McNeill TZ , Jiang H , Muzny D , Jacob LS , Hawes AC , Sodergren E , Gill R , Hume J , Morgan M , Fan G , Amin AG , Gibbs RA , Hong C , Yu XJ , Walker DH , Weinstock GM |
Ref : Journal of Bacteriology , 186 :5842 , 2004 |
Abstract : |
PubMedSearch : McLeod_2004_J.Bacteriol_186_5842 |
PubMedID: 15317790 |
Gene_locus related to this paper: ricco-PTRB , ricty-q68vs9 , ricty-q68w06 , ricty-q68w12 , ricty-q68w56 , ricty-q68wq9 , ricty-q68wt4 , ricty-q68x29 , ricty-q68xj3 |
Title : Complete Genome Sequence of Treponema pallidum, the Syphilis Spirochete - Fraser_1998_Science_281_375 |
Author(s) : Fraser CM , Norris SJ , Weinstock GM , White O , Sutton GG , Dodson R , Gwinn M , Hickey EK , Clayton R , Ketchum KA , Sodergren E , Hardham JM , McLeod MP , Salzberg S , Peterson J , Khalak H , Richardson D , Howell JK , Chidambaram M , Utterback T , McDonald L , Artiach P , Bowman C , Cotton MD , Fujii C , Garland S , Hatch B , Horst K , Roberts K , Sandusky M , Weidman J , Smith HO , Venter JC |
Ref : Science , 281 :375 , 1998 |
Abstract : |
PubMedSearch : Fraser_1998_Science_281_375 |
PubMedID: 9665876 |
Gene_locus related to this paper: trepa-naptd , trepa-TP0902 , trepa-TP0952 |