Gene_Locus Report

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Gene_locus Report for: xanax-PTRB

Xanthomonas axonopodis, Xanthomonas campestris, Xanthomonas oryzae, Xanthomonas fuscans, Xanthomonas vesicatoria, Xanthomonas perforans, protease II

Comment
Other strains: Xanthomonas axonopodis pv. citri (strain 306) Xanthomonas campestris pv. vesicatoria (strain 85-10)pv. campestris (8004; ATCC 33913 / NCPPB 528 / LMG 568; B100), Xanthomonas oryzae pv. oryzae (MAFF 311018; PXO99A), Xanthomonas fuscans subsp. aurantifolii (ICPB 11122; ICPB 10535), Xanthomonas vesicatoria ATCC 35937, Xanthomonas perforans 91-118


Relationship
Family|S9N_PREPL_Peptidase_S9
Block| X
Position in NCBI Life Tree|Xanthomonas axonopodis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Xanthomonadales: N E > Xanthomonadaceae: N E > Xanthomonas: N E > Xanthomonas axonopodis: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 3 more: AE011691, AM039952, AE013598
>3 UniProt links 4 more: Q8PPQ4, Q3BXU5, Q5GVM0
>3 UniProt links 4 more: Q8PPQ4, Q3BXU5, Q5GVM0
>3 Interpro links 4 more: Q8PPQ4, Q3BXU5, Q5GVM0
>3 Pfam links 4 more: Q8PPQ4, Q3BXU5, Q5GVM0
>3 PIRSF links 4 more: Q8PPQ4, Q3BXU5, Q5GVM0
>3 SUPERFAM links 4 more: Q8PPQ4, Q3BXU5, Q5GVM0
Sequence
Graphical view for this peptide sequence: xanax-PTRB
Colored MSA for S9N_PREPL_Peptidase_S9 (raw)
MTTVPAFAALPSPPDVAKHPHVVKAPFGATRNDDYYWLRDDKRQDKAMLA
YLNAENAYTDKVMAPLKPLEEALYTEIVGRIKQDDASVPYRERGYWYYTR
FETGKDYPIQARRKGSMEAPEEILLDVNQMAQGKGYFSVGDAAVSQDNRI
LAWADDAVGRRQYTIRFKNLETGELYPDTVEGVSANVVWADDNKTLFYIE
NDPETLLTVRVKKHVLGTPSRDDALVYEEKDDSFYMGIGRTRDDKYITIE
MESTVSSETRYALAAKPDAFKVLARRERDVEYHAEHFDGRWVIRTNADNA
RNFKLVTAPTDATTRTHWTDWVAHDDNVYIEDFELFDGFTAIEERSGGLE
RVRLLKRDGSHEYVKADEPAYSMGLSVNSEPDTAWLRYSYTSLTTPGTTY
ELNTQTGERRLLKQQPVIGYDASKYVTERVWVTARDGVKVPVSLVYKKGF
KKDGSAALFQYAYGSYGMSMDPAFNLPAISLLDRGVVYAIAHIRGGQEMG
RQWYDDGKLLHKKNTFNDFIDVTRGLVTQGYAAKDRVAASGGSAGGLLMG
AVANMAPQDYRVMVAQVPFVDVVTTMLDASIPLTTNEYDEWGNPETQDYY
AYMLSYSPYDNVRKQAYPALFVGTGLWDSQVQYWEPAKWVAKLRDDNTGT
QPIVFRTNMEAGHGGKSGRFRRYRELAESYAFVLDQLGVK
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MTTVPAFAALPSPPDVAKHPHVVKAPFGATRNDDYYWLRDDKRQDKAMLA
YLNAENAYTDKVMAPLKPLEEALYTEIVGRIKQDDASVPYRERGYWYYTR
FETGKDYPIQARRKGSMEAPEEILLDVNQMAQGKGYFSVGDAAVSQDNRI
LAWADDAVGRRQYTIRFKNLETGELYPDTVEGVSANVVWADDNKTLFYIE
NDPETLLTVRVKKHVLGTPSRDDALVYEEKDDSFYMGIGRTRDDKYITIE
MESTVSSETRYALAAKPDAFKVLARRERDVEYHAEHFDGRWVIRTNADNA
RNFKLVTAPTDATTRTHWTDWVAHDDNVYIEDFELFDGFTAIEERSGGLE
RVRLLKRDGSHEYVKADEPAYSMGLSVNSEPDTAWLRYSYTSLTTPGTTY
ELNTQTGERRLLKQQPVIGYDASKYVTERVWVTARDGVKVPVSLVYKKGF
KKDGSAALFQYAYGSYGMSMDPAFNLPAISLLDRGVVYAIAHIRGGQEMG
RQWYDDGKLLHKKNTFNDFIDVTRGLVTQGYAAKDRVAASGGSAGGLLMG
AVANMAPQDYRVMVAQVPFVDVVTTMLDASIPLTTNEYDEWGNPETQDYY
AYMLSYSPYDNVRKQAYPALFVGTGLWDSQVQYWEPAKWVAKLRDDNTGT
QPIVFRTNMEAGHGGKSGRFRRYRELAESYAFVLDQLGVK


References
6 more
    Title: The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice
    Lee BM, Park YJ, Park DS, Kang HW, Kim JG, Song ES, Park IC, Yoon UH, Hahn JH and Go SJ <9 more author(s)>
    Ref: Nucleic Acids Research, 33:577, 2005 : PubMed

            

    Title: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence
    Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Buttner D, Caldana C, Gaigalat L, Goesmann A and Kaiser O <19 more author(s)>
    Ref: Journal of Bacteriology, 187:7254, 2005 : PubMed

            

    Title: Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
    da Silva ACR, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida Jr NF and Kitajima JP <55 more author(s)>
    Ref: Nature, 417:459, 2002 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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