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Floudas D

References (8)

Title : Uncovering the hidden diversity of litter-decomposition mechanisms in mushroom-forming fungi - Floudas_2020_Isme.J_14_2046
Author(s) : Floudas D , Bentzer J , Ahren D , Johansson T , Persson P , Tunlid A
Ref : Isme J , 14 :2046 , 2020
Abstract :
PubMedSearch : Floudas_2020_Isme.J_14_2046
PubMedID: 32382073
Gene_locus related to this paper: 9agar-a0a8h5b9g3

Title : Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities - Nagy_2016_Mol.Biol.Evol_33_959
Author(s) : Nagy LG , Riley R , Tritt A , Adam C , Daum C , Floudas D , Sun H , Yadav JS , Pangilinan J , Larsson KH , Matsuura K , Barry K , LaButti K , Kuo R , Ohm RA , Bhattacharya SS , Shirouzu T , Yoshinaga Y , Martin FM , Grigoriev IV , Hibbett DS
Ref : Molecular Biology Evolution , 33 :959 , 2016
Abstract :
PubMedSearch : Nagy_2016_Mol.Biol.Evol_33_959
PubMedID: 26659563
Gene_locus related to this paper: 9homo-a0a164swv2 , 9homo-a0a164tl22 , 9homo-a0a164vkv1 , 9homo-a0a164y4j9 , 9homo-a0a164y4l9 , 9homo-a0a164ytj2 , 9homo-a0a164zeu0 , exigl-a0a165as65 , exigl-a0a165ck85 , 9basi-a0a165cm83 , 9aphy-a0a165dbf1 , 9aphy-a0a165dbf3 , 9basi-a0a165dcb7 , 9aphy-a0a165ddj9 , exigl-a0a165dj22 , exigl-a0a165dmd7 , 9aphy-a0a165egr5 , 9basi-a0a165ekd3 , 9basi-a0a165enc9 , 9basi-a0a165end6 , 9basi-a0a165epz3 , 9basi-a0a165eq46 , 9basi-a0a165eq95 , 9basi-a0a165eqk7 , 9basi-a0a165eup2 , 9aphy-a0a165fb02 , 9aphy-a0a165fmr9 , 9aphy-a0a165g3p1 , 9basi-a0a165g673 , 9basi-a0a165g6g2 , 9aphy-a0a165gec2 , 9basi-a0a165gfp7 , 9aphy-a0a165h505 , 9aphy-a0a165hd72 , 9aphy-a0a165hrk1 , exigl-a0a165hzc8 , 9basi-a0a165i2y7 , 9basi-a0a165iru3 , 9basi-a0a165is19 , 9basi-a0a165is40 , exigl-a0a165j2r4 , exigl-a0a165j754 , 9basi-a0a165jg92 , 9basi-a0a165jgb0 , exigl-a0a165ke04 , exigl-a0a165kpb0 , exigl-a0a165l7g6 , 9aphy-a0a165lux8 , 9aphy-a0a165luy2.1 , 9aphy-a0a165luy2.2 , exigl-a0a165m310 , 9aphy-a0a165mxa5 , 9aphy-a0a165mxc8 , 9aphy-a0a165mxe4 , exigl-a0a165mz73 , 9homo-a0a165nfz4 , 9homo-a0a165ng04 , 9aphy-a0a165nry3 , 9homo-a0a165ntf3 , 9homo-a0a165p2a0 , 9aphy-a0a165ph74 , 9homo-a0a165phz5 , exigl-a0a165pm12 , exigl-a0a165pu90 , exigl-a0a165puh2 , 9aphy-a0a165q9t4 , 9homo-a0a165qeb7 , 9homo-a0a165qeh8 , 9aphy-a0a165qqm2 , 9aphy-a0a165quj0 , 9aphy-a0a165qul3 , exigl-a0a165qxy0 , 9aphy-a0a165r6t2 , 9aphy-a0a165r8g4 , 9aphy-a0a165tfc7 , 9homo-a0a165tgm2 , 9homo-a0a165tzv4 , 9homo-a0a165tzw4 , 9homo-a0a165uez3 , 9homo-a0a165ugh4 , 9homo-a0a165ugp4 , 9homo-a0a165ugq6 , 9homo-a0a165uh51 , 9aphy-a0a165umj9 , 9homo-a0a165us14 , 9homo-a0a165xi11 , 9homo-a0a165xmw5 , 9homo-a0a165xmx9 , 9homo-a0a165xsk7 , 9homo-a0a165y3k8 , 9homo-a0a165yhg3 , 9homo-a0a165ymb3 , 9homo-a0a165yt77 , 9homo-a0a165ytu4 , 9homo-a0a165zr30 , 9homo-a0a166a1g9 , 9homo-a0a166a1h1 , exigl-a0a166abe4 , 9homo-a0a166akq6 , exigl-a0a166al33 , 9homo-a0a166arm1 , 9homo-a0a166as45 , 9homo-a0a166as65 , 9homo-a0a166as77 , exigl-a0a166auh4 , 9homo-a0a166azk8 , exigl-a0a166azz6 , 9homo-a0a166bss2 , 9homo-a0a166bsu9 , 9homo-a0a166bui6 , 9homo-a0a166crl5 , 9homo-a0a166d8q4 , 9homo-a0a166dss7 , 9homo-a0a166dtg8 , 9homo-a0a166du49 , 9homo-a0a166du64 , 9homo-a0a166e1z2 , 9homo-a0a166eec5 , 9homo-a0a166eux5 , 9homo-a0a166evw5 , 9homo-a0a166ey75 , 9homo-a0a166eyq0 , 9homo-a0a166ez78 , 9homo-a0a166eze7 , 9homo-a0a166fh25 , 9homo-a0a166g4k8 , 9homo-a0a166gct1 , 9homo-a0a166gf56 , 9homo-a0a166gsr8 , 9homo-a0a166j6i1 , 9homo-a0a166jiu0 , 9homo-a0a166jr36 , 9homo-a0a166kia8 , 9homo-a0a166ks21 , 9homo-a0a166kvn8 , 9homo-a0a166kxf0 , 9homo-a0a166kxg2 , 9homo-a0a166lcs7 , 9homo-a0a166lw48 , 9homo-a0a166lyz4 , 9homo-a0a166puu7.1 , 9homo-a0a166puu7.2 , 9homo-a0a166puz0 , 9homo-a0a166pv75 , 9homo-a0a166pva0 , 9homo-a0a166pvf7 , 9homo-a0a166px11 , 9homo-a0a166q635 , 9basi-a0a167gl88 , 9basi-a0a167gl97 , 9basi-a0a167gla5 , 9basi-a0a167hca0 , 9basi-a0a167hrt3 , 9basi-a0a167hru7 , 9basi-a0a167k219 , 9basi-a0a167k232 , 9basi-a0a167k265 , 9basi-a0a167l6m6 , 9basi-a0a167lrl7 , 9basi-a0a167lt70 , 9basi-a0a167mtk7 , 9basi-a0a167n1z0 , 9basi-a0a167p9x5 , 9basi-a0a167qks1 , 9basi-a0a167qkt4 , 9basi-a0a167qky5 , 9basi-a0a167qln8 , 9basi-a0a167rpp7 , 9homo-a0a167u8e3 , 9homo-a0a167v1m8 , 9homo-a0a166hqx0 , 9homo-a0a166l842 , exigl-a0a165n4f2 , exigl-a0a165q512 , 9agam-a0a165nq75 , 9agam-a0a166cv75 , 9agam-a0a165mvt4 , 9agam-a0a164t8q2 , 9agam-a0a166flp0

Title : Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii - Floudas_2015_Fungal.Genet.Biol_76_78
Author(s) : Floudas D , Held BW , Riley R , Nagy LG , Koehler G , Ransdell AS , Younus H , Chow J , Chiniquy J , Lipzen A , Tritt A , Sun H , Haridas S , LaButti K , Ohm RA , Kues U , Blanchette RA , Grigoriev IV , Minto RE , Hibbett DS
Ref : Fungal Genet Biol , 76 :78 , 2015
Abstract :
PubMedSearch : Floudas_2015_Fungal.Genet.Biol_76_78
PubMedID: 25683379
Gene_locus related to this paper: 9agar-a0a0d6zyq5 , 9agar-a0a0d7a2p9 , 9agar-a0a0d7a2v2 , 9agar-a0a0d7abt2 , 9agar-a0a0d7acd3 , 9agar-a0a0d7acx0 , 9agar-a0a0d7acx9 , 9agar-a0a0d7adg2 , 9agar-a0a0d7a6d0 , 9agar-a0a0d7aen7 , 9agar-a0a0d7aez7 , 9agar-a0a0d7ahq5 , 9agar-a0a0d7akr6 , 9agar-a0a0d7al29 , 9agar-a0a0d7an16 , 9agar-a0a0d7ann7 , 9agar-a0a0d7anv1 , 9homo-a0a0d7atv2 , 9homo-a0a0d7ay28 , 9homo-a0a0d7ayz7 , 9homo-a0a0d7b1w8 , 9homo-a0a0d7b2p0 , 9homo-a0a0d7b4n4 , 9homo-a0a0d7b624 , 9homo-a0a0d7b7r3 , 9homo-a0a0d7b7w3 , 9homo-a0a0d7bac5 , 9homo-a0a0d7bav7 , 9homo-a0a0d7bbx7 , 9homo-a0a0d7bdn7 , 9homo-a0a0d7bgj9 , 9homo-a0a0d7biw2 , 9homo-a0a0d7bqi1 , 9homo-a0a0d7bv80 , 9agar-a0a0d7b6f6 , 9agar-a0a0d7b976 , 9agar-a0a0d7aeu9 , 9agar-a0a0d7ag53 , 9agar-a0a0d7b8a5

Title : Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot\/brown-rot paradigm for wood decay fungi - Riley_2014_Proc.Natl.Acad.Sci.U.S.A_111_9923
Author(s) : Riley R , Salamov AA , Brown DW , Nagy LG , Floudas D , Held BW , Levasseur A , Lombard V , Morin E , Otillar R , Lindquist EA , Sun H , LaButti KM , Schmutz J , Jabbour D , Luo H , Baker SE , Pisabarro AG , Walton JD , Blanchette RA , Henrissat B , Martin F , Cullen D , Hibbett DS , Grigoriev IV
Ref : Proc Natl Acad Sci U S A , 111 :9923 , 2014
Abstract :
PubMedSearch : Riley_2014_Proc.Natl.Acad.Sci.U.S.A_111_9923
PubMedID: 24958869
Gene_locus related to this paper: pleos-a0a067nlj6 , 9agar-a0a067t0n0 , 9agar-a0a067sha0 , 9homo-a0a067pav0 , pleos-a0a067n337 , 9homo-a0a067pz82 , 9homo-a0a067m7p7 , pleos-a0a067p245 , 9homo-a0a067lrz6 , 9homo-a0a067m4r5 , 9homo-a0a067mr63 , 9homo-a0a067mrq8 , 9agar-a0a067t4j6 , 9homo-a0a067pdz2 , 9homo-a0a067q2n9 , 9agar-a0a067tsx5 , 9homo-a0a067mfq5 , 9homo-a0a067qc90 , pleos-a0a067p113 , 9homo-a0a067pwi6 , 9agar-a0a067s6d7 , 9agar-a0a067tie7 , pleos-a0a067ngc3 , 9agar-a0a067st69 , 9agar-a0a067t6h9 , 9agar-a0a067tj80 , pleos-a0a067npl2 , 9agar-a0a067sm07 , 9agar-a0a067tar9 , 9agar-a0a067tid6 , 9agar-a0a067u335 , pleos-a0a067ndv5 , pleos-a0a067nqw6 , 9homo-a0a067pkj2 , 9agar-a0a067t683 , 9homo-a0a067mgl1 , 9agar-a0a067sg35 , 9homo-a0a067q7g6 , 9agar-a0a067tub0 , 9agar-a0a067t8f5 , 9agar-a0a067tj19 , 9homo-a0a067pyu9 , 9agar-a0a067tjp8 , 9agar-a0a067sjg9 , 9agar-a0a067u0h4 , pleos-a0a067nxe9 , 9agar-a0a067sqt2 , 9agar-a0a067tgx3 , 9homo-a0a067psv8 , 9agar-a0a067sq58 , 9homo-a0a067m4m0 , 9agar-a0a067tqz5 , pleos-a0a067new9 , 9homo-a0a067m9v3 , 9agar-a0a067tlx5 , 9agar-a0a067tfq4 , pleos-a0a067nln4 , pleos-a0a067ndf5 , pleos-a0a067nn26 , pleos-a0a067nfv2 , 9homo-a0a067pnd3 , 9agar-a0a067sw48 , pleos-a0a067neg3 , pleos-a0a067nz51 , pleos-a0a067naf9 , pleos-a0a067nad7 , 9agar-a0a067sxe2 , 9agar-a0a067slu3 , pleos-a0a067n7p8 , pleos-a0a067nl60 , pleos-a0a067ncd0 , 9agar-a0a067th99 , 9agar-a0a067sp22 , pleos-a0a067pbw7 , 9homo-a0a067q916 , 9homo-a0a067pwe5 , galm3-a0a067scb0 , galm3-popa

Title : Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis - Fernandez-Fueyo_2012_Proc.Natl.Acad.Sci.U.S.A_109_5458
Author(s) : Fernandez-Fueyo E , Ruiz-Duenas FJ , Ferreira P , Floudas D , Hibbett DS , Canessa P , Larrondo LF , James TY , Seelenfreund D , Lobos S , Polanco R , Tello M , Honda Y , Watanabe T , Ryu JS , Kubicek CP , Schmoll M , Gaskell J , Hammel KE , St John FJ , Vanden Wymelenberg A , Sabat G , Splinter BonDurant S , Syed K , Yadav JS , Doddapaneni H , Subramanian V , Lavin JL , Oguiza JA , Perez G , Pisabarro AG , Ramirez L , Santoyo F , Master E , Coutinho PM , Henrissat B , Lombard V , Magnuson JK , Kues U , Hori C , Igarashi K , Samejima M , Held BW , Barry KW , LaButti KM , Lapidus A , Lindquist EA , Lucas SM , Riley R , Salamov AA , Hoffmeister D , Schwenk D , Hadar Y , Yarden O , de Vries RP , Wiebenga A , Stenlid J , Eastwood D , Grigoriev IV , Berka RM , Blanchette RA , Kersten P , Martinez AT , Vicuna R , Cullen D
Ref : Proc Natl Acad Sci U S A , 109 :5458 , 2012
Abstract :
PubMedSearch : Fernandez-Fueyo_2012_Proc.Natl.Acad.Sci.U.S.A_109_5458
PubMedID: 22434909
Gene_locus related to this paper: cers8-m2r3x2 , cers8-m2qf37 , cers8-m2pcy7 , cers8-m2pcz3 , cers8-m2qn26 , cers8-m2r654 , cers8-m2r8g9 , cers8-m2ps90 , cers8-m2qn44 , cers8-m2q837 , cers8-m2pjy6 , cers8-m2r609 , cers8-m2qy35 , cers8-m2r1n1 , cers8-m2rl22 , cers8-m2qkx5 , cers8-m2qib7 , cers8-m2rgs8 , cers8-m2rlx6 , cers8-m2r4p3 , cers8-m2rf62 , cers8-m2qyx5 , cers8-m2pcz2 , cers8-m2rm22 , cers8-m2qwb7 , cers8-m2r9u3 , cers8-m2pp23 , cers8-m2r613 , cers8-m2rup8 , cers8-m2piv7 , cers8-m2rch3 , cers8-m2qvf7 , cers8-m2qvb7 , cers8-m2qvb2 , cers8-m2pip7 , cers8-m2rb73 , cers8-m2qgd3 , cers8-m2rcg8 , cers8-m2rb68

Title : The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes - Floudas_2012_Science_336_1715
Author(s) : Floudas D , Binder M , Riley R , Barry K , Blanchette RA , Henrissat B , Martinez AT , Otillar R , Spatafora JW , Yadav JS , Aerts A , Benoit I , Boyd A , Carlson A , Copeland A , Coutinho PM , de Vries RP , Ferreira P , Findley K , Foster B , Gaskell J , Glotzer D , Gorecki P , Heitman J , Hesse C , Hori C , Igarashi K , Jurgens JA , Kallen N , Kersten P , Kohler A , Kues U , Kumar TK , Kuo A , LaButti K , Larrondo LF , Lindquist E , Ling A , Lombard V , Lucas S , Lundell T , Martin R , McLaughlin DJ , Morgenstern I , Morin E , Murat C , Nagy LG , Nolan M , Ohm RA , Patyshakuliyeva A , Rokas A , Ruiz-Duenas FJ , Sabat G , Salamov A , Samejima M , Schmutz J , Slot JC , St John F , Stenlid J , Sun H , Sun S , Syed K , Tsang A , Wiebenga A , Young D , Pisabarro A , Eastwood DC , Martin F , Cullen D , Grigoriev IV , Hibbett DS
Ref : Science , 336 :1715 , 2012
Abstract :
PubMedSearch : Floudas_2012_Science_336_1715
PubMedID: 22745431
Gene_locus related to this paper: aurde-j0d098 , aurde-j0dc31 , glota-s7rlc1 , fompi-s8f7s4 , dacsp-m5fpg2 , dicsq-r7sm16 , dacsp-m5g7q5 , dacsp-m5fr12 , glota-s7q5w3 , fompi-s8f826.1 , fompi-s8f826.2 , dicsq-r7sy09 , glota-s7rt87 , dicsq-r7t032 , glota-s7rym7 , fompi-s8fiv2 , dacsp-m5gda3.2 , dicsq-r7swi6 , dacsp-m5frf2 , fompi-s8ebb6 , dicsq-r7sln3 , dicsq-r7sya6 , dacsp-m5g7g1 , dicsq-r7syx7 , dicsq-r7sx57 , dacsp-m5fps7 , glota-s7pwi7 , dicsq-r7swj6 , fompi-s8ejq6 , dicsq-r7spc3 , glota-s7q258 , dacsp-m5ft65 , glota-s7q3m7 , fompi-s8dkc7 , glota-s7q1z1 , fompi-s8eqi2 , glota-s7q1z8 , fompi-s8du50 , dacsp-m5gg33 , dacsp-m5g3a7 , fompi-s8ecd7 , fompi-s8dps1 , dacsp-m5fwr0 , dicsq-r7sub7 , glota-s7q8k9 , fompi-s8ffc3 , dacsp-m5g2f9 , fompi-s8ecc2 , dacsp-m5g868 , fompi-s8f890 , dicsq-r7t1a8 , fompi-s8ebx4 , fompi-s8eb97 , glota-s7q222 , glota-s7puf0 , fompi-s8f6v9 , dacsp-m5g0z2 , dacsp-m5gdh9 , fompi-s8fb37 , dacsp-m5fy91 , glota-s7q5v6 , fompi-s8fl44 , dicsq-r7stv9 , dicsq-r7szk3 , fompi-s8epq9 , glota-s7rh56 , dacsp-m5gbt1 , punst-r7s3x9 , punst-r7s0t5 , glota-s7q312 , glota-s7rhh6 , dicsq-r7t117 , dicsq-r7slz3

Title : Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche - Morin_2012_Proc.Natl.Acad.Sci.U.S.A_109_17501
Author(s) : Morin E , Kohler A , Baker AR , Foulongne-Oriol M , Lombard V , Nagy LG , Ohm RA , Patyshakuliyeva A , Brun A , Aerts AL , Bailey AM , Billette C , Coutinho PM , Deakin G , Doddapaneni H , Floudas D , Grimwood J , Hilden K , Kues U , LaButti KM , Lapidus A , Lindquist EA , Lucas SM , Murat C , Riley RW , Salamov AA , Schmutz J , Subramanian V , Wosten HA , Xu J , Eastwood DC , Foster GD , Sonnenberg AS , Cullen D , de Vries RP , Lundell T , Hibbett DS , Henrissat B , Burton KS , Kerrigan RW , Challen MP , Grigoriev IV , Martin F
Ref : Proc Natl Acad Sci U S A , 109 :17501 , 2012
Abstract :
PubMedSearch : Morin_2012_Proc.Natl.Acad.Sci.U.S.A_109_17501
PubMedID: 23045686
Gene_locus related to this paper: agabu-k5x1b4 , agabu-k5x521 , agabu-k5w389 , agabu-k5wbk9 , agabu-k5wrh0 , agabu-k5ws85 , agabu-k5wsf9 , agabu-k5wxv1 , agabu-k5x0d9 , agabu-k5x588 , agabu-k5x5x2 , agabu-k5xd51 , agabu-k5xh54 , agabu-k5xsm1 , agabu-k5xsp8 , agabu-k5xtc1 , agabu-k5y2v2 , agabb-k9i3g9 , agabb-k9hnv7 , agabb-k9hr46 , agabu-k5wys0

Title : The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi - Eastwood_2011_Science_333_762
Author(s) : Eastwood DC , Floudas D , Binder M , Majcherczyk A , Schneider P , Aerts A , Asiegbu FO , Baker SE , Barry K , Bendiksby M , Blumentritt M , Coutinho PM , Cullen D , de Vries RP , Gathman A , Goodell B , Henrissat B , Ihrmark K , Kauserud H , Kohler A , LaButti K , Lapidus A , Lavin JL , Lee YH , Lindquist E , Lilly W , Lucas S , Morin E , Murat C , Oguiza JA , Park J , Pisabarro AG , Riley R , Rosling A , Salamov A , Schmidt O , Schmutz J , Skrede I , Stenlid J , Wiebenga A , Xie X , Kues U , Hibbett DS , Hoffmeister D , Hogberg N , Martin F , Grigoriev IV , Watkinson SC
Ref : Science , 333 :762 , 2011
Abstract :
PubMedSearch : Eastwood_2011_Science_333_762
PubMedID: 21764756
Gene_locus related to this paper: serl3-f8prj2 , serl3-f8qcc4 , serl9-f8ngp6 , serl9-f8nhd7 , serl9-f8nhq9 , serl9-f8nq77 , serl9-f8nr67 , serl9-f8nrt5 , serl9-f8nvy7.1 , serl9-f8nvy7.2 , serl9-f8nvy8 , serl9-f8nxt0.1 , serl9-f8nxt0.2 , serl9-f8nzr3 , serl9-f8p0f0 , serl9-f8p6v0 , serl9-f8p015 , serl9-f8p018 , serl9-f8p386 , serl9-f8paz8 , serl9-f8pbv1 , serl9-f8pby1 , serl9-f8pc25 , serl9-f8pc39 , serl9-f8nia7 , serl3-f8pju2 , serl9-f8peh1 , serl9-nps3