Report for Gabaldon T

Title : Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence - Alioto_2020_Plant.J_101_455

Author(s) : Alioto T , Alexiou KG , Bardil A , Barteri F , Castanera R , Cruz F , Dhingra A , Duval H , Fernandez IMA , Frias L , Galan B , Garcia JL , Howad W , Gomez-Garrido J , Gut M , Julca I , Morata J , Puigdomenech P , Ribeca P , Rubio Cabetas MJ , Vlasova A , Wirthensohn M , Garcia-Mas J , Gabaldon T , Casacuberta JM , Arus P

Ref : Plant J , 101 :455 , 2020

Abstract : Alioto_2020_Plant.J_101_455

ESTHER : Alioto_2020_Plant.J_101_455

PubMedSearch : Alioto_2020_Plant.J_101_455

PubMedID: 31529539

Gene_locus related to this paper: prupe-m5wr61

Title : The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest - Rispe_2020_BMC.Biol_18_90

Author(s) : Rispe C , Legeai F , Nabity PD , Fernandez R , Arora AK , Baa-Puyoulet P , Banfill CR , Bao L , Barbera M , Bouallegue M , Bretaudeau A , Brisson JA , Calevro F , Capy P , Catrice O , Chertemps T , Couture C , Deliere L , Douglas AE , Dufault-Thompson K , Escuer P , Feng H , Forneck A , Gabaldon T , Guigo R , Hilliou F , Hinojosa-Alvarez S , Hsiao YM , Hudaverdian S , Jacquin-Joly E , James EB , Johnston S , Joubard B , Le Goff G , Le Trionnaire G , Librado P , Liu S , Lombaert E , Lu HL , Maibeche M , Makni M , Marcet-Houben M , Martinez-Torres D , Meslin C , Montagne N , Moran NA , Papura D , Parisot N , Rahbe Y , Lopes MR , Ripoll-Cladellas A , Robin S , Roques C , Roux P , Rozas J , Sanchez-Gracia A , Sanchez-Herrero JF , Santesmasses D , Scatoni I , Serre RF , Tang M , Tian W , Umina PA , van Munster M , Vincent-Monegat C , Wemmer J , Wilson ACC , Zhang Y , Zhao C , Zhao J , Zhao S , Zhou X , Delmotte F , Tagu D

Ref : BMC Biol , 18 :90 , 2020

Abstract : Rispe_2020_BMC.Biol_18_90

ESTHER : Rispe_2020_BMC.Biol_18_90

PubMedSearch : Rispe_2020_BMC.Biol_18_90

PubMedID: 32698880

Title : Regulatory Mechanisms of a Highly Pectinolytic Mutant of Penicillium occitanis and Functional Analysis of a Candidate Gene in the Plant Pathogen Fusarium oxysporum - Bravo-Ruiz_2017_Front.Microbiol_8_1627

Author(s) : Bravo-Ruiz G , Sassi AH , Marcet-Houben M , Di Pietro A , Gargouri A , Gabaldon T , Roncero MIG

Ref : Front Microbiol , 8 :1627 , 2017

Abstract : Bravo-Ruiz_2017_Front.Microbiol_8_1627

ESTHER : Bravo-Ruiz_2017_Front.Microbiol_8_1627

PubMedSearch : Bravo-Ruiz_2017_Front.Microbiol_8_1627

PubMedID: 28951729

Gene_locus related to this paper: 9euro-a0a2h3iaz6 , 9euro-a0a2h3idj6 , talmq-b6qez0 , 9euro-a0a6v8hq83 , 9euro-a0a2h3iyg9

Title : Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum - Banani_2016_BMC.Genomics_17_19

Author(s) : Banani H , Marcet-Houben M , Ballester AR , Abbruscato P , Gonzalez-Candelas L , Gabaldon T , Spadaro D

Ref : BMC Genomics , 17 :19 , 2016

Abstract : Banani_2016_BMC.Genomics_17_19

ESTHER : Banani_2016_BMC.Genomics_17_19

PubMedSearch : Banani_2016_BMC.Genomics_17_19

PubMedID: 26729047

Gene_locus related to this paper: penpa-a0a135lje1 , penpa-a0a135lr60 , penpa-a0a135le68 , penpa-a0a135lm58 , penpa-a0a135ln75 , penpa-a0a135ljx5

Title : Genome sequence of the olive tree, Olea europaea - Cruz_2016_Gigascience_5_29

Author(s) : Cruz F , Julca I , Gomez-Garrido J , Loska D , Marcet-Houben M , Cano E , Galan B , Frias L , Ribeca P , Derdak S , Gut M , Sanchez-Fernandez M , Garcia JL , Gut IG , Vargas P , Alioto TS , Gabaldon T

Ref : Gigascience , 5 :29 , 2016

Abstract : Cruz_2016_Gigascience_5_29

ESTHER : Cruz_2016_Gigascience_5_29

PubMedSearch : Cruz_2016_Gigascience_5_29

PubMedID: 27346392

Gene_locus related to this paper: aurpu-a0a1a7mdx5

Title : Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus - Perlin_2015_BMC.Genomics_16_461

Author(s) : Perlin MH , Amselem J , Fontanillas E , Toh SS , Chen Z , Goldberg J , Duplessis S , Henrissat B , Young S , Zeng Q , Aguileta G , Petit E , Badouin H , Andrews J , Razeeq D , Gabaldon T , Quesneville H , Giraud T , Hood ME , Schultz DJ , Cuomo CA

Ref : BMC Genomics , 16 :461 , 2015

Abstract : Perlin_2015_BMC.Genomics_16_461

ESTHER : Perlin_2015_BMC.Genomics_16_461

PubMedSearch : Perlin_2015_BMC.Genomics_16_461

PubMedID: 26076695

Gene_locus related to this paper: ustv1-u5h5e5

Title : Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity - Ballester_2015_Mol.Plant.Microbe.Interact_28_232

Author(s) : Ballester AR , Marcet-Houben M , Levin E , Sela N , Selma-Lazaro C , Carmona L , Wisniewski M , Droby S , Gonzalez-Candelas L , Gabaldon T

Ref : Mol Plant Microbe Interact , 28 :232 , 2015

Abstract : Ballester_2015_Mol.Plant.Microbe.Interact_28_232

ESTHER : Ballester_2015_Mol.Plant.Microbe.Interact_28_232

PubMedSearch : Ballester_2015_Mol.Plant.Microbe.Interact_28_232

PubMedID: 25338147

Gene_locus related to this paper: penit-a0a0a2l561 , penen-a0a0a2iyk1 , penen-a0a0a2i229 , penen-a0a0a2i8g2 , penen-a0a0a2ics6 , penen-a0a0a2ify1 , penen-a0a0a2ihw0 , penen-a0a0a2iiw0 , penen-a0a0a2ikw9 , penen-a0a0a2iml7 , penen-a0a0a2iqj9 , penen-a0a0a2ivm8 , penen-a0a0a2ivv1 , penen-a0a0a2iyi6 , penen-a0a0a2iyr7 , penen-a0a0a2jea6 , penen-a0a0a2jfn6 , penen-a0a0a2jis8 , penen-a0a0a2jj44 , penen-a0a0a2jm29 , penen-a0a0a2jn61 , penen-a0a0a2js16 , penen-a0a0a2jub7 , penen-a0a0a2k5c9 , penen-a0a0a2k6i1 , penen-a0a0a2kcd4 , penit-a0a0a2ki35 , penen-a0a0a2kjr7 , penit-a0a0a2ksc5 , penit-a0a0a2ktu4 , penit-a0a0a2kvf2 , penit-a0a0a2kvj8 , penit-a0a0a2kz50 , penit-a0a0a2kzf2 , penit-a0a0a2l3i2 , penit-a0a0a2l784 , penit-a0a0a2l802 , penit-a0a0a2la42 , penit-a0a0a2lc95 , penit-a0a0a2lcl9 , penit-a0a0a2k9q9 , pend2-k9gep5 , penen-a0a0a2jay5 , penit-a0a0a2lf25 , penen-a0a0a2ipm7 , penit-a0a0a2l0j9 , penit-a0a0a2kwb1 , penen-a0a0a2j4q8 , penen-cnsh , penen-a0a0a2kjd4

Title : The genome of the recently domesticated crop plant sugar beet (Beta vulgaris) - Dohm_2014_Nature_505_546

Author(s) : Dohm JC , Minoche AE , Holtgrawe D , Capella-Gutierrez S , Zakrzewski F , Tafer H , Rupp O , Sorensen TR , Stracke R , Reinhardt R , Goesmann A , Kraft T , Schulz B , Stadler PF , Schmidt T , Gabaldon T , Lehrach H , Weisshaar B , Himmelbauer H

Ref : Nature , 505 :546 , 2014

Abstract : Dohm_2014_Nature_505_546

ESTHER : Dohm_2014_Nature_505_546

PubMedSearch : Dohm_2014_Nature_505_546

PubMedID: 24352233

Gene_locus related to this paper: betvu-a0a0j8bcg5 , betvu-a0a0j8fqe7 , spiol-a0a0k9r9x3 , spiol-a0a0k9rit5 , spiol-a0a0k9riw3 , spiol-a0a0k9rub8 , spiol-a0a0k9rxl0 , spiol-a0a0k9qau1 , spiol-a0a0k9rrd8 , spiol-a0a0k9qe58 , spiol-a0a0k9r322 , betvv-a0a0j8b442 , spiol-a0a0k9qnw2 , spiol-a0a0k9ri52 , spiol-a0a0k9r6e9

Title : The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution - Traeger_2013_PLoS.Genet_9_e1003820

Author(s) : Traeger S , Altegoer F , Freitag M , Gabaldon T , Kempken F , Kumar A , Marcet-Houben M , Poggeler S , Stajich JE , Nowrousian M

Ref : PLoS Genet , 9 :e1003820 , 2013

Abstract : Traeger_2013_PLoS.Genet_9_e1003820

ESTHER : Traeger_2013_PLoS.Genet_9_e1003820

PubMedSearch : Traeger_2013_PLoS.Genet_9_e1003820

PubMedID: 24068976

Gene_locus related to this paper: pyrom-u4ltg1 , pyrom-u4lhe1 , pyrom-u4kwa3 , pyrom-u4lfu9 , pyrom-u4l0a5 , pyrom-u4l0n5 , pyrom-u4lhv4 , pyrom-u4l8w9 , pyrom-u4lvb8 , pyrom-u4l9c9 , pyrom-u4lwe6 , pyrom-u4l3n9

Title : Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida - Collen_2013_Proc.Natl.Acad.Sci.U.S.A_110_5247

Author(s) : Collen J , Porcel B , Carre W , Ball SG , Chaparro C , Tonon T , Barbeyron T , Michel G , Noel B , Valentin K , Elias M , Artiguenave F , Arun A , Aury JM , Barbosa-Neto JF , Bothwell JH , Bouget FY , Brillet L , Cabello-Hurtado F , Capella-Gutierrez S , Charrier B , Cladiere L , Cock JM , Coelho SM , Colleoni C , Czjzek M , Da Silva C , Delage L , Denoeud F , Deschamps P , Dittami SM , Gabaldon T , Gachon CM , Groisillier A , Herve C , Jabbari K , Katinka M , Kloareg B , Kowalczyk N , Labadie K , LeBlanc C , Lopez PJ , McLachlan DH , Meslet-Cladiere L , Moustafa A , Nehr Z , Nyvall Collen P , Panaud O , Partensky F , Poulain J , Rensing SA , Rousvoal S , Samson G , Symeonidi A , Weissenbach J , Zambounis A , Wincker P , Boyen C

Ref : Proc Natl Acad Sci U S A , 110 :5247 , 2013

Abstract : Collen_2013_Proc.Natl.Acad.Sci.U.S.A_110_5247

ESTHER : Collen_2013_Proc.Natl.Acad.Sci.U.S.A_110_5247

PubMedSearch : Collen_2013_Proc.Natl.Acad.Sci.U.S.A_110_5247

PubMedID: 23503846

Gene_locus related to this paper: chocr-r7qut2 , chocr-r7qfm4 , chocr-r7qf11

Title : Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus - Marcet-Houben_2012_BMC.Genomics_13_646

Author(s) : Marcet-Houben M , Ballester AR , de la Fuente B , Harries E , Marcos JF , Gonzalez-Candelas L , Gabaldon T

Ref : BMC Genomics , 13 :646 , 2012

Abstract : Marcet-Houben_2012_BMC.Genomics_13_646

ESTHER : Marcet-Houben_2012_BMC.Genomics_13_646

PubMedSearch : Marcet-Houben_2012_BMC.Genomics_13_646

PubMedID: 23171342

Gene_locus related to this paper: pend2-k9fpm0 , pend1-k9gj54 , pend1-k9g8k4 , pend1-k9fb74 , pend2-k9gs82 , pend2-k9fwv2 , pend2-k9gsr6 , pend2-k9fhm2 , pend2-k9ga52 , pend1-k9fxn6 , pend1-k9ge15 , pend1-k9f6u9 , pend1-k9gkp0 , pend2-k9frp1 , pend2-k9gep5

Title : The genome of melon (Cucumis melo L.) - Garcia-Mas_2012_Proc.Natl.Acad.Sci.U.S.A_109_11872

Author(s) : Garcia-Mas J , Benjak A , Sanseverino W , Bourgeois M , Mir G , Gonzalez VM , Henaff E , Camara F , Cozzuto L , Lowy E , Alioto T , Capella-Gutierrez S , Blanca J , Canizares J , Ziarsolo P , Gonzalez-Ibeas D , Rodriguez-Moreno L , Droege M , Du L , Alvarez-Tejado M , Lorente-Galdos B , Mele M , Yang L , Weng Y , Navarro A , Marques-Bonet T , Aranda MA , Nuez F , Pico B , Gabaldon T , Roma G , Guigo R , Casacuberta JM , Arus P , Puigdomenech P

Ref : Proc Natl Acad Sci U S A , 109 :11872 , 2012

Abstract : Garcia-Mas_2012_Proc.Natl.Acad.Sci.U.S.A_109_11872

ESTHER : Garcia-Mas_2012_Proc.Natl.Acad.Sci.U.S.A_109_11872

PubMedSearch : Garcia-Mas_2012_Proc.Natl.Acad.Sci.U.S.A_109_11872

PubMedID: 22753475

Gene_locus related to this paper: cucme-a0a1s3cge4 , cucme-a0a1s3ct47 , cucme-a0a1s3bcl7 , cucsa-a0a0a0m228 , cucme-a0a1s3bnl4 , cucme-a0a1s3b1c9 , cucme-a0a1s3b1d4 , cucme-a0a1s3buy0 , cucme-a0a1s3bva9 , cucme-a0a1s3c6j4 , cucme-a0a1s3cky2 , cucme-a0a1s3clz8 , cucme-a0a1s3buy6 , cucme-a0a1s3bp26

Title : Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains - Pena_2010_ISME.J_4_882

Author(s) : Pena A , Teeling H , Huerta-Cepas J , Santos F , Yarza P , Brito-Echeverria J , Lucio M , Schmitt-Kopplin P , Meseguer I , Schenowitz C , Dossat C , Barbe V , Dopazo J , Rossello-Mora R , Schuler M , Glockner FO , Amann R , Gabaldon T , Anton J

Ref : Isme J , 4 :882 , 2010

Abstract : Pena_2010_ISME.J_4_882

ESTHER : Pena_2010_ISME.J_4_882

PubMedSearch : Pena_2010_ISME.J_4_882

PubMedID: 20164864

Gene_locus related to this paper: salrd-q2rzy1 , salrd-q2s0e4 , salrd-q2s1i8

Report for Gabaldon T

General

References (13)

Report for Gabaldon T

General

References (13)

1. Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence

2. The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

3. Regulatory Mechanisms of a Highly Pectinolytic Mutant of Penicillium occitanis and Functional Analysis of a Candidate Gene in the Plant Pathogen Fusarium oxysporum

4. Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum

5. Genome sequence of the olive tree, Olea europaea

6. Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

7. Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity

8. The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)

9. The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution

10. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

11. Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus

12. The genome of melon (Cucumis melo L.)

13. Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains