| Title : Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast - Gostincar_2018_BMC.Genomics_19_364 |
| Author(s) : Gostincar C , Stajich JE , Zupancic J , Zalar P , Gunde-Cimerman N |
| Ref : BMC Genomics , 19 :364 , 2018 |
| PubMedID: 29764372 |
| Gene_locus related to this paper: horwe-a0a3m7em55 |
| Title : Bifiguratus adelaidae, gen. et sp. nov., a new member of Mucoromycotina in endophytic and soil-dwelling habitats - Torres-Cruz_2017_Mycologia_109_363 |
| Author(s) : Torres-Cruz TJ , Billingsley Tobias TL , Almatruk M , Hesse CN , Kuske CR , Desiro A , Benucci GMN , Bonito G , Stajich JE , Dunlap C , Arnold AE , Porras-Alfaro A |
| Ref : Mycologia , 109 :363 , 2017 |
| PubMedID: 28876195 |
| Gene_locus related to this paper: 9fung-a0a261xyf2 , 9fung-a0a261y1n4 , 9fung-a0a261xx90 |
| Title : Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis - Teixeira_2014_BMC.Genomics_15_943 |
| Author(s) : Teixeira MM , de Almeida LG , Kubitschek-Barreira P , Alves FL , Kioshima ES , Abadio AK , Fernandes L , Derengowski LS , Ferreira KS , Souza RC , Ruiz JC , de Andrade NC , Paes HC , Nicola AM , Albuquerque P , Gerber AL , Martins VP , Peconick LD , Neto AV , Chaucanez CB , Silva PA , Cunha OL , de Oliveira FF , dos Santos TC , Barros AL , Soares MA , de Oliveira LM , Marini MM , Villalobos-Duno H , Cunha MM , de Hoog S , da Silveira JF , Henrissat B , Nino-Vega GA , Cisalpino PS , Mora-Montes HM , Almeida SR , Stajich JE , Lopes-Bezerra LM , Vasconcelos AT , Felipe MS |
| Ref : BMC Genomics , 15 :943 , 2014 |
| PubMedID: 25351875 |
| Gene_locus related to this paper: spos1-u7pkb8 , 9pezi-a0a0c2epn8 , 9pezi-a0a0c2fvx8 , 9pezi-a0a0c2ihy1 , 9pezi-a0a0c2is67 , 9pezi-a0a0c2j1q8 , 9pezi-a0a0c2j8k6 , sposc-a0a0f2mb37 |
| Title : The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution - Traeger_2013_PLoS.Genet_9_e1003820 |
| Author(s) : Traeger S , Altegoer F , Freitag M , Gabaldon T , Kempken F , Kumar A , Marcet-Houben M , Poggeler S , Stajich JE , Nowrousian M |
| Ref : PLoS Genet , 9 :e1003820 , 2013 |
| PubMedID: 24068976 |
| Gene_locus related to this paper: pyrom-u4ltg1 , pyrom-u4lhe1 , pyrom-u4kwa3 , pyrom-u4lfu9 , pyrom-u4l0a5 , pyrom-u4l0n5 , pyrom-u4lhv4 , pyrom-u4l8w9 , pyrom-u4lvb8 , pyrom-u4l9c9 , pyrom-u4lwe6 , pyrom-u4l3n9 |
| Title : Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis - Gioti_2013_MBio_4_e00572 |
| Author(s) : Gioti A , Nystedt B , Li W , Xu J , Andersson A , Averette AF , Munch K , Wang X , Kappauf C , Kingsbury JM , Kraak B , Walker LA , Johansson HJ , Holm T , Lehtio J , Stajich JE , Mieczkowski P , Kahmann R , Kennell JC , Cardenas ME , Lundeberg J , Saunders CW , Boekhout T , Dawson TL , Munro CA , de Groot PW , Butler G , Heitman J , Scheynius A |
| Ref : MBio , 4 :e00572 , 2013 |
| PubMedID: 23341551 |
| Gene_locus related to this paper: mals4-m5ean5 |
| Title : Shared signatures of parasitism and phylogenomics unite Cryptomycota and microsporidia - James_2013_Curr.Biol_23_1548 |
| Author(s) : James TY , Pelin A , Bonen L , Ahrendt S , Sain D , Corradi N , Stajich JE |
| Ref : Current Biology , 23 :1548 , 2013 |
| PubMedID: 23932404 |
| Title : Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma - Ellison_2011_Genetics_189_55 |
| Author(s) : Ellison CE , Stajich JE , Jacobson DJ , Natvig DO , Lapidus A , Foster B , Aerts A , Riley R , Lindquist EA , Grigoriev IV , Taylor JW |
| Ref : Genetics , 189 :55 , 2011 |
| PubMedID: 21750257 |
| Gene_locus related to this paper: neucr-90C4.300 , neucr-B19A17.360 , neucr-B23G1.090 , neucr-NCU00292.1 , neucr-NCU02679.1 , neucr-NCU04930.1 , neucr-NCU06573.1 , neucr-NCU08752.1 , neucr-NCU09575.1 , neucr-NCU10022.1 , neucr-q7s1x0 , neucr-q7s216 , neucr-q7s259 , neucr-q7s260 , neucr-q7scr4 , neut8-f8n463 , neut9-g4uk39 , neucr-f5hbr2 , neut8-f8mcp7 , neucr-q7ry64 , neucr-FAED , neut8-f8mrh8 |
| Title : Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts - D'Souza_2011_MBio_2_e00342 |
| Author(s) : D'Souza CA , Kronstad JW , Taylor G , Warren R , Yuen M , Hu G , Jung WH , Sham A , Kidd SE , Tangen K , Lee N , Zeilmaker T , Sawkins J , McVicker G , Shah S , Gnerre S , Griggs A , Zeng Q , Bartlett K , Li W , Wang X , Heitman J , Stajich JE , Fraser JA , Meyer W , Carter D , Schein J , Krzywinski M , Kwon-Chung KJ , Varma A , Wang J , Brunham R , Fyfe M , Ouellette BF , Siddiqui A , Marra M , Jones S , Holt R , Birren BW , Galagan JE , Cuomo CA |
| Ref : MBio , 2 :e00342 , 2011 |
| PubMedID: 21304167 |
| Gene_locus related to this paper: crygw-e6qy09 , crygw-e6r2n3 , crygw-e6r7g6 , crygw-e6rbd6 , crygw-e6rcm3 , crygw-e6rg44 , cryne-q5ka03 , cryne-q5km63 , cryne-q5knq0 , cryne-q55va3 , crynj-q5kpe0 , crygr-a0a095cfy5 , crygw-kex1 |
| Title : Genome sequence of the model mushroom Schizophyllum commune - Ohm_2010_Nat.Biotechnol_28_957 |
| Author(s) : Ohm RA , de Jong JF , Lugones LG , Aerts A , Kothe E , Stajich JE , de Vries RP , Record E , Levasseur A , Baker SE , Bartholomew KA , Coutinho PM , Erdmann S , Fowler TJ , Gathman AC , Lombard V , Henrissat B , Knabe N , Kues U , Lilly WW , Lindquist E , Lucas S , Magnuson JK , Piumi F , Raudaskoski M , Salamov A , Schmutz J , Schwarze FW , vanKuyk PA , Horton JS , Grigoriev IV , Wosten HA |
| Ref : Nat Biotechnol , 28 :957 , 2010 |
| PubMedID: 20622885 |
| Gene_locus related to this paper: schcm-d8pqz6 , schcm-d8prj2 , schcm-d8pug6 , schcm-d8pxe8 , schcm-d8pxe9 , schcm-d8pxz1 , schcm-d8q1c7 , schcm-d8q2b4 , schcm-d8q3j1 , schcm-d8q5m5 , schcm-d8q7x7.1 , schcm-d8q7x7.2 , schcm-d8q8y8 , schcm-d8q9n6 , schcm-d8q697 , schcm-d8qip8 , schcm-d8q5s5 , schcm-d8ppb3 , schcm-d8ppb6 , schcm-d8pv73 , schcm-d8pzm1 , schcm-d8q5a7 , schcm-d8qif0 |
| Title : De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis - Nowrousian_2010_PLoS.Genet_6_e1000891 |
| Author(s) : Nowrousian M , Stajich JE , Chu M , Engh I , Espagne E , Halliday K , Kamerewerd J , Kempken F , Knab B , Kuo HC , Osiewacz HD , Poggeler S , Read ND , Seiler S , Smith KM , Zickler D , Kuck U , Freitag M |
| Ref : PLoS Genet , 6 :e1000891 , 2010 |
| PubMedID: 20386741 |
| Gene_locus related to this paper: neucr-q7shu8 , sormk-d1z7y1 , sormk-d1z8p7 , sormk-d1z746 , sormk-d1z812 , sormk-d1zcm2 , sormk-d1zhs5 , sormk-d1zlt5 , sormk-d1zr11 , sormk-d1zr95 , sormk-d1ztn6 , sormk-d1ztt1 , sormk-d1zux2 , sormk-f7vpt4 , sormk-f7vqu7 , sormk-f7vyd8 , sormk-f7w1j4 , sormk-f7w1p0 , sormk-f7w5h1 , sormk-f7w7t7 , sormk-f7w263 , sormk-f7w570 , sormk-f7w670 , sormk-f7wad9 , sormk-f7w8d0 , sormk-f7w8d1 , sormk-f7wbq7 , sormk-f7vmc7 , sormk-f7vq06 , sormk-f7w6v4 , sormk-f7w1s1 , sormk-kex1 |
| Title : Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control - Neafsey_2010_Genome.Res_20_938 |
| Author(s) : Neafsey DE , Barker BM , Sharpton TJ , Stajich JE , Park DJ , Whiston E , Hung CY , McMahan C , White J , Sykes S , Heiman D , Young S , Zeng Q , Abouelleil A , Aftuck L , Bessette D , Brown A , FitzGerald M , Lui A , Macdonald JP , Priest M , Orbach MJ , Galgiani JN , Kirkland TN , Cole GT , Birren BW , Henn MR , Taylor JW , Rounsley SD |
| Ref : Genome Res , 20 :938 , 2010 |
| PubMedID: 20516208 |
| Gene_locus related to this paper: cocp7-c5p2u8 , cocp7-c5p5s7 , cocp7-c5pe69 , cocp7-c5pf68 , cocp7-c5pgk6 , cocim-j3ka92 , cocp7-c5phc6 , cocps-e9d3i4 , cocit-a0a0j8rde7 , cocps-e9csw0 , cocps-e9dgm8 |