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Gene_locus Report for: orysj-q7f8x1

Oryza sativa subsp. japonica (Rice) OJ000315_02.20 protein

Comment
Other strains: Oryza sativa subsp. japonica (Rice) subsp. indica (Rice)Oryza glaberrima (African rice); Oryza barthii; Oryza nivara (Indian wild rice); Oryza glumipatula (Asian wild rice)


Relationship
Family|Duf_1350
Block| X
Position in NCBI Life Tree|Oryza sativa subsp. japonica
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E > Oryza sativa Japonica Group: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 3 more: AL731639, AP008210, CR855110
>3 UniProt links 3 more: Q7F8X1, Q0JDG2, Q01L39
>3 UniProt links 11 more: Q7F8X1, Q0JDG2, Q01L39
>3 Interpro links 11 more: Q7F8X1, Q0JDG2, Q01L39
>3 Prodom links 11 more: Q7F8X1, Q0JDG2, Q01L39
>3 Pfam links 11 more: Q7F8X1, Q0JDG2, Q01L39
>3 PIRSF links 11 more: Q7F8X1, Q0JDG2, Q01L39
>3 SUPERFAM links 11 more: Q7F8X1, Q0JDG2, Q01L39
Sequence
Graphical view for this peptide sequence: orysj-q7f8x1
Colored MSA for Duf_1350 (raw)
MIRVVSPPPPSTVQLRGGGGTPGPSSSSAVCRFWGSRRGSRVAATSSWGW
GKSRRRRRAAISCCSAEEGEGPRVATPSAPPAPSEGSIQLYSQIERVITE
AAKQSREGWGSTGDWTEIEGAWVLKPKSQEPSFVVHFVGGIFVGAAPQIT
YRFFLERLADKGALVIATPYASGFDHFFIADEVQFKFDRCLRNMVEPVND
LPTFGVGHSLGSVIHLLIGSRYAVQRSGNILMAFNNKEASLAVPLFSPVI
VPMAQSFGPIFSQLTSYPTLRFGAEAAIKQLENLSPPVVKQLLPLVQQLP
PLYMDLVKGREEFVPKPEETRRLVKSYYGISRNLLIKFKDDQIDETSILA
QVLSSESAISSLLDMSIRSLPGDHGLPLQQVLPDVPPAMADAVNRGGELL
TNLATGTPWEAVAKEVGTGGAQYCTVLSANLQFSFTRNVHLVATEGL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MIRVVSPPPPSTVQLRGGGGTPGPSSSSAVCRFWGSRRGSRVAATSSWGW
GKSRRRRRAAISCCSAEEGEGPRVATPSAPPAPSEGSIQLYSQIERVITE
AAKQSREGWGSTGDWTEIEGAWVLKPKSQEPSFVVHFVGGIFVGAAPQIT
YRFFLERLADKGALVIATPYASGFDHFFIADEVQFKFDRCLRNMVEPVND
LPTFGVGHSLGSVIHLLIGSRYAVQRSGNILMAFNNKEASLAVPLFSPVI
VPMAQSFGPIFSQLTSYPTLRFGAEAAIKQLENLSPPVVKQLLPLVQQLP
PLYMDLVKGREEFVPKPEETRRLVKSYYGISRNLLIKFKDDQIDETSILA
QVLSSESAISSLLDMSIRSLPGDHGLPLQQVLPDVPPAMADAVNRGGELL
TNLATGTPWEAVAKEVGTGGAQYCTVLSANLQFSFTRNVHLVATEGL


References
4 more
    Title: The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information
    Ohyanagi H, Tanaka T, Sakai H, Shigemoto Y, Yamaguchi K, Habara T, Fujii Y, Antonio BA, Nagamura Y and Sasaki T <4 more author(s)>
    Ref: Nucleic Acids Research, 34:D741, 2006 : PubMed

            

    Title: The map-based sequence of the rice genome.
    Matsumo T, Sasaki T
    Ref: Nature, 436:793, 2005 : PubMed

            

    Title: Sequence and analysis of rice chromosome 4
    Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y and Han B <61 more author(s)>
    Ref: Nature, 420:316, 2002 : PubMed

            


Other Papers


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Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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