Polyketide

Polyketides are produced in bacteria, fungi, plants, and certain marine animals (can be macrolides ,macrocycle, cyclic peptides, tetracycline, anthracycline, aflatoxin). The biosynthesis involves stepwise condensation of acetyl-CoA or propionyl-CoA with either malonyl-CoA or methylmalonyl-CoA. Polyketides are synthesized by multienzyme polypeptides that resemble eukaryotic fatty acid synthase but are often much larger (called polyketide synthases PKS). They include acyl-carrier domains plus an assortment of enzymatic units that can function in an iterative fashion, repeating the same elongation\/modification steps (as in fatty acid synthesis), or in a sequential fashion so as to generate more heterogeneous types of polyketides. The last reaction is often performed by a thioesterase which is an alpha\/beta hydrolase. There are various subclasses of polyketides including: aromatics, macrolactones\/macrolides, decalin ring containing, polyether, and polyenes. Polyketide synthases are divided into three classes: Type I PKSs (multimodular megasynthases that are non-iterative, often producing macrolides, polyethers, and polyenes), Type II PKSs (dissociated enzymes with iterative action, often producing aromatics), and Type III PKSs (chalcone synthase-like, producing small aromatic molecules). In addition to these subclasses, there also exist polyketides that are hybridized with nonribosomal peptides (Hybrid NRP-PK and PK-NRP). Since nonribosomal peptide assembly lines use carrier proteins similar to those used in polyketide synthases, convergence of the two systems evolved to form hybrids, resulting in polypeptides with nitrogen in the skeletal structure and complex function groups similar to those found in amino acids
Substrate Main targeted enzyme families Type Structure
Zearalanone Zearalenone-hydrolase-fam2 Zearalenone-hydrolase Natural Toxin Macrolide Polyketide Mycotoxin-metabolite
Rhodomycin-D Aclacinomycin-methylesterase_RdmC Macrolide Polyketide Natural Antibiotic
Tylosin Aclacinomycin-methylesterase_RdmC Macrolide Polyketide Natural Antibiotic
Tilmicosin Aclacinomycin-methylesterase_RdmC Macrolide Polyketide Natural Antibiotic
Tildipirosin Aclacinomycin-methylesterase_RdmC Macrolide Polyketide Natural Antibiotic
Leucomycin-a5 Aclacinomycin-methylesterase_RdmC Macrolide Polyketide Natural Antibiotic
Nanchangmycin-SNAC Thioesterase SNAC Polyketide
Di-ketide-SNAC Thioesterase SNAC Polyketide
Tiancimycin-B Tiancimycin-TnmK-Tripeptidase-HIP Natural Antibiotic Polyketide
Tiancimycin-H Tiancimycin-TnmK-Tripeptidase-HIP Natural Antibiotic Polyketide
Omphalotin-A S9N_PPCE_Peptidase_S9 Peptide Natural Macrolide Polyketide Antibiotic
Skyllamycin-A Thioesterase Peptide Natural Macrolide Polyketide Antibiotic Azabicyclo
Skyllamycin-like-precursor Thioesterase Peptide Natural Polyketide Macrolide Antibiotic
Pimaricin-linear-analogue-synthetic Thioesterase SNAC Polyketide Macrolide
Pimaricin Thioesterase Natural Macrolide Polyketide Antibiotic
Zearalenone Carbon-carbon_bond_hydrolase Zearalenone-hydrolase Zearalenone-hydrolase-fam2 6_AlphaBeta_hydrolase Natural Toxin Macrolide Polyketide Mycotoxin-metabolite
O-Demethylfonsecin Duf_1100-S UPF0255 Polyketide Chromen
10-Deoxymethynolide Thioesterase Polyketide Macrolide
Beta-zearalenol Zearalenone-hydrolase Mycotoxin-metabolite Polyketide Macrolide Natural Toxin
Alpha-zearalenol Zearalenone-hydrolase Mycotoxin-metabolite Polyketide Macrolide Natural Toxin
Aclarubicin Aclacinomycin-methylesterase_RdmC Antibiotic Natural Polyketide
Aclacinomycin Aclacinomycin-methylesterase_RdmC Antibiotic Natural Polyketide