ecoli-ycfp

Escherichia coli, Escherichia fergusonii, Escherichia albertii, hypothetical protein ycfp

Comment

There are more than 3000 strains. Other Uniprot entries and list of strains can be found with the link: Other strains

Relationship

Family : abh_upf00227

Block : X

Position in NCBI Life Tree : Escherichia coli

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)

> cellular organisms N E > Bacteria N E > Proteobacteria N E > Gammaproteobacteria N E > Enterobacterales N E > Enterobacteriaceae N E > Escherichia N E > Escherichia coli N E

Molecular evidence

No mutation

No structure

No kinetic

No disease

No substrate

No inhibitor

Sequence

Peptide

MIIYLHGFDS NSPGNHEKVL QLQFIDPDVR LISYSTRHPK HDMQHLLKEV DKMLQLNVDE RPLICGVGLG GYWAERIGFL CDIRQVIFNP NLFPYENMEG KIDRPEEYAD IATKCVTNFR EKNRDRCLVI LSRNDEALNS QRTSEELHHY YEIVWDEEQT HKFKNISPHL QRIKAFKTLG

References (71)

Title : Draft Genome Sequences of Extended-Spectrum beta-Lactamase-Producing Escherichia coli Strains Isolated from Patients in Lebanon - Tokajian_2014_Genome.Announc_2_e00123
Author(s) : Tokajian S , Eisen JA , Jospin G , Farra A , Coil DA
Ref : Genome Announc , 2 : , 2014
PubMedID: 24558252
Gene_locus related to this paper: ecoli-IROD , ecoli-IROE , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yqia , ecoli-YfhR , ecolx-f4suw9 , ecolx-g0dan0

Title : Genomics of rapid adaptation to antibiotics: convergent evolution and scalable sequence amplification - Laehnemann_2014_Genome.Biol.Evol_6_1287
Author(s) : Laehnemann D , Pena-Miller R , Rosenstiel P , Beardmore R , Jansen G , Schulenburg H
Ref : Genome Biol Evol , 6 :1287 , 2014
PubMedID: 24850796
Gene_locus related to this paper: ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yhet , ecoli-yiel , ecoli-yqia , ecoli-YfhR

Title : Complete Genome Sequences of Two Escherichia coli O145:H28 Outbreak Strains of Food Origin - Cooper_2014_Genome.Announc_2_e00482
Author(s) : Cooper KK , Mandrell RE , Louie JW , Korlach J , Clark TA , Parker CT , Huynh S , Chain PS , Ahmed S , Carter MQ
Ref : Genome Announc , 2 :e00482 , 2014
PubMedID: 24855308
Gene_locus related to this paper: ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341

Title : Escherichia coli isolate for studying colonization of the mouse intestine and its application to two-component signaling knockouts - Lasaro_2014_J.Bacteriol_196_1723
Author(s) : Lasaro M , Liu Z , Bishar R , Kelly K , Chattopadhyay S , Paul S , Sokurenko E , Zhu J , Goulian M
Ref : Journal of Bacteriology , 196 :1723 , 2014
PubMedID: 24563035
Gene_locus related to this paper: ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yqia , ecoli-YfhR

Title : Genome Sequence of Enterotoxigenic Escherichia coli Strain B2C - Madhavan_2014_Genome.Announc_2_e00247
Author(s) : Madhavan TP , Steen JA , Hugenholtz P , Sakellaris H
Ref : Genome Announc , 2 :e00247 , 2014
PubMedID: 24723709
Gene_locus related to this paper: ecoli-fes , ecoli-yaim , ecoli-ycfp , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR

Title : Complete Genome Sequences of Nitrofurantoin-Sensitive and -Resistant Escherichia coli ST540 and ST2747 Strains - Xavier_2014_Genome.Announc_2_e00239
Author(s) : Xavier BB , Vervoort J , Stewardson A , Adriaenssens N , Coenen S , Harbarth S , Goossens H , Malhotra-Kumar S
Ref : Genome Announc , 2 : , 2014
PubMedID: 24723707
Gene_locus related to this paper: ecoli-fes , ecoli-yaim , ecoli-ycfp , ecoli-yiel

Title : Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7 - Cooper_2014_BMC.Genomics_15_17
Author(s) : Cooper KK , Mandrell RE , Louie JW , Korlach J , Clark TA , Parker CT , Huynh S , Chain PS , Ahmed S , Carter MQ
Ref : BMC Genomics , 15 :17 , 2014
PubMedID: 24410921
Gene_locus related to this paper: ecoli-fes , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930 , ecoli-YfhR

Title : First Complete Genome Sequence of Escherichia albertii Strain KF1, a New Potential Human Enteric Pathogen - Fiedoruk_2014_Genome.Announc_2_e00004
Author(s) : Fiedoruk K , Daniluk T , Swiecicka I , Murawska E , Sciepuk M , Leszczynska K
Ref : Genome Announc , 2 :e00004 , 2014
PubMedID: 24482506
Gene_locus related to this paper: ecoli-ycfp , ecoli-yqia

Title : Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States - Sanjar_2014_Genome.Announc_2_e01120
Author(s) : Sanjar F , Hazen TH , Shah SM , Koenig SS , Agrawal S , Daugherty S , Sadzewicz L , Tallon LJ , Mammel MK , Feng P , Soderlund R , Tarr PI , Debroy C , Dudley EG , Cebula TA , Ravel J , Fraser CM , Rasko DA , Eppinger M
Ref : Genome Announc , 2 : , 2014
PubMedID: 24407635
Gene_locus related to this paper: ecoli-fes , ecoli-ycfp , ecoli-ypt1 , ecoli-yqia , ecoli-Z1930

Title : Adaptive evolution of Escherichia coli to an alpha-peptide\/beta-peptoid peptidomimetic induces stable resistance - Hein-Kristensen_2013_PLoS.One_8_e73620
Author(s) : Hein-Kristensen L , Franzyk H , Holch A , Gram L
Ref : PLoS ONE , 8 :e73620 , 2013
PubMedID: 24040003
Gene_locus related to this paper: ecoli-IROD , ecoli-ybff , ecoli-ycfp , ecoli-yiel , ecoli-yqia , ecoli-YfhR

Title : Draft Genome Sequence of Uropathogenic Escherichia coli Strain J96 - Klein_2013_Genome.Announc_1_E00245
Author(s) : Klein EA , Gitai Z
Ref : Genome Announc , 1 : , 2013
PubMedID: 23469357
Gene_locus related to this paper: ecoli-IROD , ecoli-IROE , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yqia

Title : Adaptive mutations and replacements of virulence traits in the Escherichia coli O104:H4 outbreak population - Guy_2013_PLoS.One_8_e63027
Author(s) : Guy L , Jernberg C , Arven Norling J , Ivarsson S , Hedenstrom I , Melefors O , Liljedahl U , Engstrand L , Andersson SG
Ref : PLoS ONE , 8 :e63027 , 2013
PubMedID: 23675451
Gene_locus related to this paper: ecoli-MCMK , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yhet , ecoli-yiel , ecoli-yqia

Title : Genome Sequences of Avian Pathogenic Escherichia coli Strains Isolated from Brazilian Commercial Poultry - Rojas_2013_Genome.Announc_1_e0011013
Author(s) : Rojas TC , Maluta RP , Parizzi LP , Koenigkan LV , Yang J , Yu J , Pereira GA , Dias da Silveira W
Ref : Genome Announc , 1 :e0011013 , 2013
PubMedID: 23516222
Gene_locus related to this paper: ecoli-d7xp23 , ecoli-IROD , ecoli-IROE , ecoli-estX , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yiel , ecoli-ypt1 , ecoli-yqia , ecoli-Z1930 , ecoli-YfhR

Title : Genome Sequences of Two Emerging Non-O157 Shiga Toxin-Producing Escherichia coli Strains - Cao_2013_Genome.Announc_1_E00200
Author(s) : Cao G , Ju W , Rump L , Zhao S , Zou L , Wang C , Strain E , Luo Y , Timme R , Allard M , Brown E , Meng J
Ref : Genome Announc , 1 :E00200 , 2013
PubMedID: 23682138
Gene_locus related to this paper: ecoli-d7xp23 , ecoli-ybff , ecoli-ycfp , ecoli-yiel , ecoli-yqia , ecoli-Z1930 , ecoli-YfhR

Title : Draft Genome Sequences of Two O104:H21 Escherichia coli Isolates Causing Hemorrhagic Colitis during a 1994 Montana Outbreak Provide Insight into Their Pathogenicity - Gonzalez-Escalona_2013_Genome.Announc_1_e00805
Author(s) : Gonzalez-Escalona N , McFarland MA , Rump LV , Payne J , Andrzejewski D , Brown EW , Evans PS , Croley TR
Ref : Genome Announc , 1 : , 2013
PubMedID: 24092795
Gene_locus related to this paper: ecoli-d7xp23 , ecoli-ycfp , ecoli-yiel , ecoli-yqia , ecoli-YfhR , ecolx-e1iyu3

Title : Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms - Dziva_2013_Infect.Immun_81_838
Author(s) : Dziva F , Hauser H , Connor TR , van Diemen PM , Prescott G , Langridge GC , Eckert S , Chaudhuri RR , Ewers C , Mellata M , Mukhopadhyay S , Curtiss R, 3rd , Dougan G , Wieler LH , Thomson NR , Pickard DJ , Stevens MP
Ref : Infect Immun , 81 :838 , 2013
PubMedID: 23275093
Gene_locus related to this paper: ecoli-yaim , ecoli-ycfp , ecoli-yqia , ecoli-Z1930

Title : Draft Genome Sequence of an Escherichia coli O157:H43 Strain Isolated from Cattle - Svab_2013_Genome.Announc_1_E00263
Author(s) : Svab D , Horvath B , Szucs A , Maroti G , Toth I
Ref : Genome Announc , 1 : , 2013
PubMedID: 23723396
Gene_locus related to this paper: ecoli-yaim , ecoli-ycfp , ecoli-yhet , ecoli-ypt1 , ecoli-yqia , ecoli-yuar , ecoli-Z1930

Title : Complete Genome Sequence of the Epidemic and Highly Virulent CTX-M-15-Producing H30-Rx Subclone of Escherichia coli ST131 - Andersen_2013_Genome.Announc_1_e00988
Author(s) : Andersen PS , Stegger M , Aziz M , Contente-Cuomo T , Gibbons HS , Keim P , Sokurenko EV , Johnson JR , Price LB
Ref : Genome Announc , 1 :e00988 , 2013
PubMedID: 24309736
Gene_locus related to this paper: ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yiel , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecolx-f4suw9 , ecolx-g0dan0

Title : Complete genome sequence of the avian pathogenic Escherichia coli strain APEC O78 - Mangiamele_2013_Genome.Announc_1_e0002613
Author(s) : Mangiamele P , Nicholson B , Wannemuehler Y , Seemann T , Logue CM , Li G , Tivendale KA , Nolan LK
Ref : Genome Announc , 1 :e0002613 , 2013
PubMedID: 23516182
Gene_locus related to this paper: ecoli-ycfp , ecoli-yqia , ecoli-YfhR

Title : Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains - Eppinger_2013_Genome.Announc_1_e0013412
Author(s) : Eppinger M , Daugherty S , Agrawal S , Galens K , Sengamalay N , Sadzewicz L , Tallon L , Cebula TA , Mammel MK , Feng P , Soderlund R , Tarr PI , Debroy C , Dudley EG , Fraser CM , Ravel J
Ref : Genome Announc , 1 :e0013412 , 2013
PubMedID: 23516226
Gene_locus related to this paper: ecoli-fes , ecoli-estX , ecoli-ycfp , ecoli-yhet , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930

Title : Draft genome of a Brazilian avian-pathogenic Escherichia coli strain and in silico characterization of virulence-related genes - Rojas_2012_J.Bacteriol_194_3023
Author(s) : Rojas TC , Parizzi LP , Tiba MR , Chen L , Pereira GA , Sangal V , Yang J , Yu J , Dias da Silveira W
Ref : Journal of Bacteriology , 194 :3023 , 2012
PubMedID: 22582380
Gene_locus related to this paper: ecoli-IROD , ecoli-IROE , ecoli-ycfp , ecoli-YFBB , ecoli-ypt1 , ecoli-YfhR

Title : Draft Genome sequence of Escherichia coli AI27, a porcine isolate belonging to phylogenetic group B1 - Lee_2012_J.Bacteriol_194_6640
Author(s) : Lee K , Yi H , Cho YJ , Jang J , Hur HG , Chun J
Ref : Journal of Bacteriology , 194 :6640 , 2012
PubMedID: 23144394
Gene_locus related to this paper: ecoli-IROD , ecoli-yaim , ecoli-ycfp , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR

Title : Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2 - Ahmed_2012_PLoS.One_7_e48228
Author(s) : Ahmed SA , Awosika J , Baldwin C , Bishop-Lilly KA , Biswas B , Broomall S , Chain PS , Chertkov O , Chokoshvili O , Coyne S , Davenport K , Detter JC , Dorman W , Erkkila TH , Folster JP , Frey KG , George M , Gleasner C , Henry M , Hill KK , Hubbard K , Insalaco J , Johnson S , Kitzmiller A , Krepps M , Lo CC , Luu T , McNew LA , Minogue T , Munk CA , Osborne B , Patel M , Reitenga KG , Rosenzweig CN , Shea A , Shen X , Strockbine N , Tarr C , Teshima H , van Gieson E , Verratti K , Wolcott M , Xie G , Sozhamannan S , Gibbons HS
Ref : PLoS ONE , 7 :e48228 , 2012
PubMedID: 23133618
Gene_locus related to this paper: ecoli-MCMK , ecoli-ycfp , ecoli-yqia , ecoli-YfhR

Title : Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes - Turner_2012_J.Ind.Microbiol.Biotechnol_39_629
Author(s) : Turner PC , Yomano LP , Jarboe LR , York SW , Baggett CL , Moritz BE , Zentz EB , Shanmugam KT , Ingram LO
Ref : J Ind Microbiol Biotechnol , 39 :629 , 2012
PubMedID: 22075923
Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yeiG , ecoli-yhet , ecoli-yiel , ecoli-yqia , ecoli-YfhR

Title : Draft genome sequences of the diarrheagenic Escherichia coli collection - Hazen_2012_J.Bacteriol_194_3026
Author(s) : Hazen TH , Sahl JW , Redman JC , Morris CR , Daugherty SC , Chibucos MC , Sengamalay NA , Fraser-Liggett CM , Steinsland H , Whittam TS , Whittam B , Manning SD , Rasko DA
Ref : Journal of Bacteriology , 194 :3026 , 2012
PubMedID: 22582382
Gene_locus related to this paper: ecoli-d7xp23 , ecoli-fes , ecoli-MCMK , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930 , ecoli-YfhR

Title : Phylogenetic analysis of non-O157 Shiga toxin-producing Escherichia coli strains by whole-genome sequencing - Ju_2012_J.Clin.Microbiol_50_4123
Author(s) : Ju W , Cao G , Rump L , Strain E , Luo Y , Timme R , Allard M , Zhao S , Brown E , Meng J
Ref : J Clin Microbiol , 50 :4123 , 2012
PubMedID: 23052305
Gene_locus related to this paper: ecoli-d7xp23 , ecoli-MCMK , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yhet , ecoli-yiel , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930 , ecoli-YfhR

Title : Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic Escherichia coli - Shepard_2012_J.Bacteriol_194_395
Author(s) : Shepard SM , Danzeisen JL , Isaacson RE , Seemann T , Achtman M , Johnson TJ
Ref : Journal of Bacteriology , 194 :395 , 2012
PubMedID: 22081385
Gene_locus related to this paper: ecoli-fes , ecoli-estX , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yqia , ecoli-YfhR

Title : Escherichia coli serotype O55:H7 diversity supports parallel acquisition of bacteriophage at Shiga toxin phage insertion sites during evolution of the O157:H7 lineage - Kyle_2012_J.Bacteriol_194_1885
Author(s) : Kyle JL , Cummings CA , Parker CT , Quinones B , Vatta P , Newton E , Huynh S , Swimley M , Degoricija L , Barker M , Fontanoz S , Nguyen K , Patel R , Fang R , Tebbs R , Petrauskene O , Furtado M , Mandrell RE
Ref : Journal of Bacteriology , 194 :1885 , 2012
PubMedID: 22328665
Gene_locus related to this paper: ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yhet , ecoli-yqia , ecoli-Z1930

Title : Genome sequence of Escherichia coli J53, a reference strain for genetic studies - Yi_2012_J.Bacteriol_194_3742
Author(s) : Yi H , Cho YJ , Yong D , Chun J
Ref : Journal of Bacteriology , 194 :3742 , 2012
PubMedID: 22740669
Gene_locus related to this paper: ecoli-fes , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yiel

Title : A novel Escherichia coli O157:H7 clone causing a major hemolytic uremic syndrome outbreak in China - Xiong_2012_PLoS.One_7_e36144
Author(s) : Xiong Y , Wang P , Lan R , Ye C , Wang H , Ren J , Jing H , Wang Y , Zhou Z , Bai X , Cui Z , Luo X , Zhao A , Zhang S , Sun H , Wang L , Xu J
Ref : PLoS ONE , 7 :e36144 , 2012
PubMedID: 22558360
Gene_locus related to this paper: ecoli-ycfp , ecoli-YFBB , ecoli-yqia , ecoli-Z1341

Title : Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011 - Grad_2012_Proc.Natl.Acad.Sci.U.S.A_109_3065
Author(s) : Grad YH , Lipsitch M , Feldgarden M , Arachchi HM , Cerqueira GC , FitzGerald M , Godfrey P , Haas BJ , Murphy CI , Russ C , Sykes S , Walker BJ , Wortman JR , Young S , Zeng Q , Abouelleil A , Bochicchio J , Chauvin S , Desmet T , Gujja S , McCowan C , Montmayeur A , Steelman S , Frimodt-Moller J , Petersen AM , Struve C , Krogfelt KA , Bingen E , Weill FX , Lander ES , Nusbaum C , Birren BW , Hung DT , Hanage WP
Ref : Proc Natl Acad Sci U S A , 109 :3065 , 2012
PubMedID: 22315421
Gene_locus related to this paper: ecoli-fes , ecoli-MCMK , ecoli-yaim , ecoli-ycfp , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yqia , ecoli-YfhR

Title : Draft genome sequence of Escherichia coli W26, an enteric strain isolated from cow feces - Kim_2012_J.Bacteriol_194_5149
Author(s) : Kim M , Yi H , Cho YJ , Jang J , Hur HG , Chun J
Ref : Journal of Bacteriology , 194 :5149 , 2012
PubMedID: 22933771
Gene_locus related to this paper: ecoli-fes , ecoli-ycfp , ecoli-yiel , ecoli-yqia , ecoli-yuar

Title : Genome sequence of a porcine extraintestinal pathogenic Escherichia coli strain - Tan_2011_J.Bacteriol_193_5038
Author(s) : Tan C , Xu Z , Zheng H , Liu W , Tang X , Shou J , Wu B , Wang S , Zhao GP , Chen H
Ref : Journal of Bacteriology , 193 :5038 , 2011
PubMedID: 21742868
Gene_locus related to this paper: ecoli-IROD , ecoli-IROE , ecoli-ycfp , ecoli-YFBB , ecoli-ypt1 , ecoli-yqia

Title : Complete genome sequence of adherent invasive Escherichia coli UM146 isolated from Ileal Crohn's disease biopsy tissue - Krause_2011_J.Bacteriol_193_583
Author(s) : Krause DO , Little AC , Dowd SE , Bernstein CN
Ref : Journal of Bacteriology , 193 :583 , 2011
PubMedID: 21075930
Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-entf , ecoli-IROD , ecoli-IROE , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yeiG , ecoli-YFBB , ecoli-yiel , ecoli-yqia , ecoli-YfhR , ecout-q1r7l6

Title : Draft genome sequences of six Escherichia coli isolates from the stepwise model of emergence of Escherichia coli O157:H7 - Rump_2011_J.Bacteriol_193_2058
Author(s) : Rump LV , Strain EA , Cao G , Allard MW , Fischer M , Brown EW , Gonzalez-Escalona N
Ref : Journal of Bacteriology , 193 :2058 , 2011
PubMedID: 21317333
Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-yafa , ecoli-ycfp , ecoli-yeiG , ecoli-yhet , ecoli-yqia , ecoli-Z0347 , ecoli-Z1930 , ecoli-Z2445

Title : Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India - Avasthi_2011_J.Bacteriol_193_4272
Author(s) : Avasthi TS , Kumar N , Baddam R , Hussain A , Nandanwar N , Jadhav S , Ahmed N
Ref : Journal of Bacteriology , 193 :4272 , 2011
PubMedID: 21685291
Gene_locus related to this paper: ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yiel , ecoli-yqia , ecoli-YfhR , ecolx-f4suw9 , ecolx-g0dan0

Title : Insights into a multidrug resistant Escherichia coli pathogen of the globally disseminated ST131 lineage: genome analysis and virulence mechanisms - Totsika_2011_PLoS.One_6_e26578
Author(s) : Totsika M , Beatson SA , Sarkar S , Phan MD , Petty NK , Bachmann N , Szubert M , Sidjabat HE , Paterson DL , Upton M , Schembri MA
Ref : PLoS ONE , 6 :e26578 , 2011
PubMedID: 22053197
Gene_locus related to this paper: ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yqia , ecolx-f4suw9 , ecolx-g0dan0

Title : Genome sequence of Escherichia coli XH140A, which produces L-threonine - Yang_2011_J.Bacteriol_193_6090
Author(s) : Yang H , Liao Y , Wang B , Lin Y , Pan L
Ref : Journal of Bacteriology , 193 :6090 , 2011
PubMedID: 21994923
Gene_locus related to this paper: ecoli-ybff , ecoli-ycfp , ecoli-yqia , ecoli-YfhR

Title : Rates of mutation and host transmission for an Escherichia coli clone over 3 years - Reeves_2011_PLoS.One_6_e26907
Author(s) : Reeves PR , Liu B , Zhou Z , Li D , Guo D , Ren Y , Clabots C , Lan R , Johnson JR , Wang L
Ref : PLoS ONE , 6 :e26907 , 2011
PubMedID: 22046404
Gene_locus related to this paper: ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yqia

Title : Genome sequence of Escherichia coli AA86, isolated from cow feces - Yi_2011_J.Bacteriol_193_3681
Author(s) : Yi H , Cho YJ , Hur HG , Chun J
Ref : Journal of Bacteriology , 193 :3681 , 2011
PubMedID: 21602332
Gene_locus related to this paper: ecoli-ycfp , ecoli-YfhR , ecolx-f4suw9

Title : Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology - Mellmann_2011_PLoS.One_6_e22751
Author(s) : Mellmann A , Harmsen D , Cummings CA , Zentz EB , Leopold SR , Rico A , Prior K , Szczepanowski R , Ji Y , Zhang W , McLaughlin SF , Henkhaus JK , Leopold B , Bielaszewska M , Prager R , Brzoska PM , Moore RL , Guenther S , Rothberg JM , Karch H
Ref : PLoS ONE , 6 :e22751 , 2011
PubMedID: 21799941
Gene_locus related to this paper: ecoli-ycfp , ecoli-YFBB , ecoli-yqia , ecoli-YfhR

Title : Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany - Rasko_2011_N.Engl.J.Med_365_709
Author(s) : Rasko DA , Webster DR , Sahl JW , Bashir A , Boisen N , Scheutz F , Paxinos EE , Sebra R , Chin CS , Iliopoulos D , Klammer A , Peluso P , Lee L , Kislyuk AO , Bullard J , Kasarskis A , Wang S , Eid J , Rank D , Redman JC , Steyert SR , Frimodt-Moller J , Struve C , Petersen AM , Krogfelt KA , Nataro JP , Schadt EE , Waldor MK
Ref : N Engl J Med , 365 :709 , 2011
PubMedID: 21793740
Gene_locus related to this paper: ecoli-fes , ecoli-MCMK , ecoli-yaim , ecoli-ycfp , ecoli-YFBB , ecoli-yiel , ecoli-yqia

Title : Identification of protective and broadly conserved vaccine antigens from the genome of extraintestinal pathogenic Escherichia coli - Moriel_2010_Proc.Natl.Acad.Sci.U.S.A_107_9072
Author(s) : Moriel DG , Bertoldi I , Spagnuolo A , Marchi S , Rosini R , Nesta B , Pastorello I , Corea VA , Torricelli G , Cartocci E , Savino S , Scarselli M , Dobrindt U , Hacker J , Tettelin H , Tallon LJ , Sullivan S , Wieler LH , Ewers C , Pickard D , Dougan G , Fontana MR , Rappuoli R , Pizza M , Serino L
Ref : Proc Natl Acad Sci U S A , 107 :9072 , 2010
PubMedID: 20439758
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-YfhR , ecout-q1r7l6 , yerpe-YBTT

Title : Host imprints on bacterial genomes--rapid, divergent evolution in individual patients - Zdziarski_2010_PLoS.Pathog_6_e1001078
Author(s) : Zdziarski J , Brzuszkiewicz E , Wullt B , Liesegang H , Biran D , Voigt B , Gronberg-Hernandez J , Ragnarsdottir B , Hecker M , Ron EZ , Daniel R , Gottschalk G , Hacker J , Svanborg C , Dobrindt U
Ref : PLoS Pathog , 6 :e1001078 , 2010
PubMedID: 20865122
Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-yafa , ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yqia , ecoli-YfhR

Title : Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes - Nash_2010_BMC.Genomics_11_667
Author(s) : Nash JH , Villegas A , Kropinski AM , Aguilar-Valenzuela R , Konczy P , Mascarenhas M , Ziebell K , Torres AG , Karmali MA , Coombes BK
Ref : BMC Genomics , 11 :667 , 2010
PubMedID: 21108814
Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-entf , ecoli-IROD , ecoli-rdmC , ecoli-yafa , ecoli-ybff , ecoli-ycfp , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yqia , ecos5-d2nhh3

Title : A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407 - Crossman_2010_J.Bacteriol_192_5822
Author(s) : Crossman LC , Chaudhuri RR , Beatson SA , Wells TJ , Desvaux M , Cunningham AF , Petty NK , Mahon V , Brinkley C , Hobman JL , Savarino SJ , Turner SM , Pallen MJ , Penn CW , Parkhill J , Turner AK , Johnson TJ , Thomson NR , Smith SG , Henderson IR
Ref : Journal of Bacteriology , 192 :5822 , 2010
PubMedID: 20802035
Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yeiG , ecoli-YFBB , ecoli-yiel , ecoli-yqia

Title : Derivation of Escherichia coli O157:H7 from its O55:H7 precursor - Zhou_2010_PLoS.One_5_e8700
Author(s) : Zhou Z , Li X , Liu B , Beutin L , Xu J , Ren Y , Feng L , Lan R , Reeves PR , Wang L
Ref : PLoS ONE , 5 :e8700 , 2010
PubMedID: 20090843
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR

Title : Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2 - Toh_2010_J.Bacteriol_192_1165
Author(s) : Toh H , Oshima K , Toyoda A , Ogura Y , Ooka T , Sasamoto H , Park SH , Iyoda S , Kurokawa K , Morita H , Itoh K , Taylor TD , Hayashi T , Hattori M
Ref : Journal of Bacteriology , 192 :1165 , 2010
PubMedID: 20008064
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecos5-d2nhh3 , yerpe-YBTT , ecolx-f4suw9

Title : Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042 - Chaudhuri_2010_PLoS.One_5_e8801
Author(s) : Chaudhuri RR , Sebaihia M , Hobman JL , Webber MA , Leyton DL , Goldberg MD , Cunningham AF , Scott-Tucker A , Ferguson PR , Thomas CM , Frankel G , Tang CM , Dudley EG , Roberts IS , Rasko DA , Pallen MJ , Parkhill J , Nataro JP , Thomson NR , Henderson IR
Ref : PLoS ONE , 5 :e8801 , 2010
PubMedID: 20098708
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-YfhR , yerpe-YBTT

Title : Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli - Ogura_2009_Proc.Natl.Acad.Sci.U.S.A_106_17939
Author(s) : Ogura Y , Ooka T , Iguchi A , Toh H , Asadulghani M , Oshima K , Kodama T , Abe H , Nakayama K , Kurokawa K , Tobe T , Hattori M , Hayashi T
Ref : Proc Natl Acad Sci U S A , 106 :17939 , 2009
PubMedID: 19815525
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C2429 , ecoli-C4836 , ecoli-d7xp23 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR , yerpe-YBTT

Title : A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis - Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713
Author(s) : Leopold SR , Magrini V , Holt NJ , Shaikh N , Mardis ER , Cagno J , Ogura Y , Iguchi A , Hayashi T , Mellmann A , Karch H , Besser TE , Sawyer SA , Whittam TS , Tarr PI
Ref : Proc Natl Acad Sci U S A , 106 :8713 , 2009
PubMedID: 19439656
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , neucr-q7sha3

Title : Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348\/69 - Iguchi_2009_J.Bacteriol_191_347
Author(s) : Iguchi A , Thomson NR , Ogura Y , Saunders D , Ooka T , Henderson IR , Harris D , Asadulghani M , Kurokawa K , Dean P , Kenny B , Quail MA , Thurston S , Dougan G , Hayashi T , Parkhill J , Frankel G
Ref : Journal of Bacteriology , 191 :347 , 2009
PubMedID: 18952797
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR

Title : Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12 - Ferenci_2009_J.Bacteriol_191_4025
Author(s) : Ferenci T , Zhou Z , Betteridge T , Ren Y , Liu Y , Feng L , Reeves PR , Wang L
Ref : Journal of Bacteriology , 191 :4025 , 2009
PubMedID: 19376874
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR

Title : Genome sequences of Escherichia coli B strains REL606 and BL21(DE3) - Jeong_2009_J.Mol.Biol_394_644
Author(s) : Jeong H , Barbe V , Lee CH , Vallenet D , Yu DS , Choi SH , Couloux A , Lee SW , Yoon SH , Cattolico L , Hur CG , Park HS , Segurens B , Kim SC , Oh TK , Lenski RE , Studier FW , Daegelen P , Kim JF
Ref : Journal of Molecular Biology , 394 :644 , 2009
PubMedID: 19786035
Gene_locus related to this paper: eco57-b3a913 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR

Title : Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence - Kulasekara_2009_Infect.Immun_77_3713
Author(s) : Kulasekara BR , Jacobs M , Zhou Y , Wu Z , Sims E , Saenphimmachak C , Rohmer L , Ritchie JM , Radey M , McKevitt M , Freeman TL , Hayden H , Haugen E , Gillett W , Fong C , Chang J , Beskhlebnaya V , Waldor MK , Samadpour M , Whittam TS , Kaul R , Brittnacher M , Miller SI
Ref : Infect Immun , 77 :3713 , 2009
PubMedID: 19564389
Gene_locus related to this paper: eco57-b3a913 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z0347 , ecoli-Z1341 , ecoli-Z1930 , ecoli-YfhR

Title : The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates - Rasko_2008_J.Bacteriol_190_6881
Author(s) : Rasko DA , Rosovitz MJ , Myers GS , Mongodin EF , Fricke WF , Gajer P , Crabtree J , Sebaihia M , Thomson NR , Chaudhuri R , Henderson IR , Sperandio V , Ravel J
Ref : Journal of Bacteriology , 190 :6881 , 2008
PubMedID: 18676672
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z2445 , ecoli-YfhR

Title : The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse - Durfee_2008_J.Bacteriol_190_2597
Author(s) : Durfee T , Nelson R , Baldwin S , Plunkett G, 3rd , Burland V , Mau B , Petrosino JF , Qin X , Muzny DM , Ayele M , Gibbs RA , Csorgo B , Posfai G , Weinstock GM , Blattner FR
Ref : Journal of Bacteriology , 190 :2597 , 2008
PubMedID: 18245285
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR

Title : Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult - Oshima_2008_DNA.Res_15_375
Author(s) : Oshima K , Toh H , Ogura Y , Sasamoto H , Morita H , Park SH , Ooka T , Iyoda S , Taylor TD , Hayashi T , Itoh K , Hattori M
Ref : DNA Research , 15 :375 , 2008
PubMedID: 18931093
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR

Title : Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5 - Fricke_2008_J.Bacteriol_190_6779
Author(s) : Fricke WF , Wright MS , Lindell AH , Harkins DM , Baker-Austin C , Ravel J , Stepanauskas R
Ref : Journal of Bacteriology , 190 :6779 , 2008
PubMedID: 18708504
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-estX , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecosm-b1lhu2

Title : The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes - Johnson_2007_J.Bacteriol_189_3228
Author(s) : Johnson TJ , Kariyawasam S , Wannemuehler Y , Mangiamele P , Johnson SJ , Doetkott C , Skyberg JA , Lynne AM , Johnson JR , Nolan LK
Ref : Journal of Bacteriology , 189 :3228 , 2007
PubMedID: 17293413
Gene_locus related to this paper: ecok1-a1acc0 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-YfhR , ecout-q1r7l6 , yerpe-YBTT

Title : Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110 - Hayashi_2006_Mol.Syst.Biol_2_2006 0007
Author(s) : Hayashi K , Morooka N , Yamamoto Y , Fujita K , Isono K , Choi S , Ohtsubo E , Baba T , Wanner BL , Mori H , Horiuchi T
Ref : Mol Syst Biol , 2 :2006 0007 , 2006
PubMedID: 16738553
Gene_locus related to this paper: ecoli-Aes , ecoli-dlhh , ecoli-mhpc , ecoli-ycfp , ecoli-yeiG , ecoli-yhet , ecoli-yiel , ecoli-ypfh , ecoli-yqia

Title : Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach - Chen_2006_Proc.Natl.Acad.Sci.U.S.A_103_5977
Author(s) : Chen SL , Hung CS , Xu J , Reigstad CS , Magrini V , Sabo A , Blasiar D , Bieri T , Meyer RR , Ozersky P , Armstrong JR , Fulton RS , Latreille JP , Spieth J , Hooton TM , Mardis ER , Hultgren SJ , Gordon JI
Ref : Proc Natl Acad Sci U S A , 103 :5977 , 2006
PubMedID: 16585510
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecout-q1r7l6 , yerpe-YBTT

Title : Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536 - Hochhut_2006_Mol.Microbiol_61_584
Author(s) : Hochhut B , Wilde C , Balling G , Middendorf B , Dobrindt U , Brzuszkiewicz E , Gottschalk G , Carniel E , Hacker J
Ref : Molecular Microbiology , 61 :584 , 2006
PubMedID: 16879640
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecolx-q707d7 , yerpe-YBTT

Title : Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T - Wei_2003_Infect.Immun_71_2775
Author(s) : Wei J , Goldberg MB , Burland V , Venkatesan MM , Deng W , Fournier G , Mayhew GF , Plunkett G, 3rd , Rose DJ , Darling A , Mau B , Perna NT , Payne SM , Runyen-Janecky LJ , Zhou S , Schwartz DC , Blattner FR
Ref : Infect Immun , 71 :2775 , 2003
PubMedID: 12704152
Gene_locus related to this paper: ecoli-yafa , ecoli-ycfp , ecoli-yqia , ecoli-YfhR , shifl-BIOH , shifl-FES , shifl-PLDB , shifl-PTRB , shifl-SF1808 , shifl-SF3046 , shifl-yafa , shifl-YBFF , shifl-YCDJ , shifl-YFBB , shifl-YHET , shifl-YIEL , shifl-YJFP , shifl-YPFH

Title : Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157 - Jin_2002_Nucleic.Acids.Res_30_4432
Author(s) : Jin Q , Yuan Z , Xu J , Wang Y , Shen Y , Lu W , Wang J , Liu H , Yang J , Yang F , Zhang X , Zhang J , Yang G , Wu H , Qu D , Dong J , Sun L , Xue Y , Zhao A , Gao Y , Zhu J , Kan B , Ding K , Chen S , Cheng H , Yao Z , He B , Chen R , Ma D , Qiang B , Wen Y , Hou Y , Yu J
Ref : Nucleic Acids Research , 30 :4432 , 2002
PubMedID: 12384590
Gene_locus related to this paper: ecoli-Aes , ecoli-yafa , ecoli-ycfp , ecoli-yqia , ecoli-YfhR , shifl-AES , shifl-BIOH , shifl-entf , shifl-FES , shifl-PLDB , shifl-PTRB , shifl-SF1334 , shifl-SF1808 , shifl-SF3046 , shifl-SF3908 , shifl-yafa , shifl-YBFF , shifl-YCDJ , shifl-YCJY , shifl-YFBB , shifl-YHET , shifl-YIEL , shifl-YJFP , shifl-YPFH

Title : Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 - Hayashi_2001_DNA.Res_8_11
Author(s) : Hayashi T , Makino K , Ohnishi M , Kurokawa K , Ishii K , Yokoyama K , Han CG , Ohtsubo E , Nakayama K , Murata T , Tanaka M , Tobe T , Iida T , Takami H , Honda T , Sasakawa C , Ogasawara N , Yasunaga T , Kuhara S , Shiba T , Hattori M , Shinagawa H
Ref : DNA Research , 8 :11 , 2001
PubMedID: 11258796
Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1341 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR

Title : A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map - Oshima_1996_DNA.Res_3_137
Author(s) : Oshima T , Aiba H , Baba T , Fujita K , Hayashi K , Honjo A , Ikemoto K , Inada T , Itoh T , Kajihara M , Kanai K , Kashimoto K , Kimura S , Kitagawa M , Makino K , Masuda S , Miki T , Mizobuchi K , Mori H , Motomura K , Nakamura Y , Nashimoto H , Nishio Y , Saito N , Horiuchi T , et al.
Ref : DNA Research , 3 :137 , 1996
PubMedID: 8905232
Gene_locus related to this paper: ecoli-rutD , ecoli-fes , ecoli-ybff , ecoli-ycfp