Escherichia coli, Escherichia albertii, protein YcjY Dienelactone_hydrolase
In some bacteria a gene fusion event leads to expression of a CMD with a hydrolase involved in the same pathway In these bifunctional proteins (e.g. O67982) CMD represents the C-terminal domain, Abhydrolase_1 represents the N-terminal domain.Z0370. Other strains: Escherichia coli (strains O6\; O157:H7\/EC4401\/EC4196\/EC508\/EC4076\/EC4486\/EC4501\/EC4113\/EC869\/TW14588\/TW14359\/EC4115\/G5101\/1044\/EC4045\/EC4042\/EC4206\/LSU-61\/EC1212\/3256-97\/1125\/\; MS 200-1\; MS 185-1\; B185\; 3_2_53FAA\; MS 69-1\; B354\; MS 198-1\; 83972\; FVEC1302\; NC101\; MS 45-1\; UTI89\/UPEC\; SMS-3-5\/SECEC\; O150:H5\/SE15\; O55:H7\/CB9615\/EPEC\; O44:H18\/042\/EAEC\; O45:K1\/S88\/ExPEC\; O1:K1\/APEC\; O6:K15:H31\/536\/UPEC\; O7:K1\/IAI39\/ExPEC\; O17:K52:H18\/UMN026\/ExPEC\; O127:H6\/E2348\/69\/EPEC\; O18:K1:H7\/IHE3034\/ExPEC\; FVEC1412\; O157:H- H 2687\/493-89\; O55:H7 USDA 5905\; RN587\/1\; 1-176-05_S3_C2\; O145:H28 str. RM12581\; O145:NM str. 2010C-3526\; UCI 65\; 5-366-08_S1_C3\; 5-366-08_S1_C1\; 1-250-04_S3_C2\; O7:K1 str. CE10\; O157:H7 str. SS52\; APEC O18\; O6:H1\; O1:K1 \/ APEC\; O83:H1\; O7:K1\; O157:H7\; 2362-75\; 3.4880\; HVH 25\; HVH 41\; HVH 70\; UMEA 3200-1\; UMEA 3718-1\; UMEA 3323-1\; 97.0259\; LAU-EC10) Escherichia albertii TW07627Escherichia fergusonii\; Klebsiella oxytoca\; Shigella boydii ATCC 9905\; organismal metagenomes human gut metagenome\; (strain UMEA 3162-1, strain CFT073 \/ ATCC 700928 \/ UPEC, strain NRG 857C \/ AIEC, strain IAI39 \/ ExPEC, strain EC869, 4-5851939, 4-2677849, 4-2963531)
Family : YcjY-like
Block : X
Position in NCBI Life Tree : Escherichia coli
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms N E > Bacteria N E > Proteobacteria N E > Gammaproteobacteria N E > Enterobacterales N E > Enterobacteriaceae N E > Escherichia N E > Escherichia coli N EMKTVSIKHTY WDIAADIYFP DDFNSEKKYP AIISAHPIGS CKEQTSGSVY GAALAKAGFI VIAFDASFQG SSGGEPRYLE DPTMRVKDFS IVVDYLTTLP YVDAGRIGVL GICGGGGYAI NAAMTERRIK AIGTVTGANY GRLMREGFTA FNPIGALEAM AQQRTDEANG AKLRVDDLLP SSPEAALEAG LTEIDLFEAT EYYRSPRGCA PNGVNRSLFS HQTVAVGWDA FHLAEVLLTQ PLMVVVGDRV GAFGAYRDGC EIIGRAASKH KELVVVEGYS HYDLYDKPEP VKQALDKLIP FYKTHL
Title : Draft genome sequences of six Escherichia coli isolates from the stepwise model of emergence of Escherichia coli O157:H7 - Rump_2011_J.Bacteriol_193_2058 |
Author(s) : Rump LV , Strain EA , Cao G , Allard MW , Fischer M , Brown EW , Gonzalez-Escalona N |
Ref : Journal of Bacteriology , 193 :2058 , 2011 |
Abstract : |
PubMedSearch : Rump_2011_J.Bacteriol_193_2058 |
PubMedID: 21317333 |
Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-yafa , ecoli-ycfp , ecoli-yeiG , ecoli-yhet , ecoli-yqia , ecoli-Z0347 , ecoli-Z1930 , ecoli-Z2445 |
Title : Derivation of Escherichia coli O157:H7 from its O55:H7 precursor - Zhou_2010_PLoS.One_5_e8700 |
Author(s) : Zhou Z , Li X , Liu B , Beutin L , Xu J , Ren Y , Feng L , Lan R , Reeves PR , Wang L |
Ref : PLoS ONE , 5 :e8700 , 2010 |
Abstract : |
PubMedSearch : Zhou_2010_PLoS.One_5_e8700 |
PubMedID: 20090843 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |
Title : Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2 - Toh_2010_J.Bacteriol_192_1165 |
Author(s) : Toh H , Oshima K , Toyoda A , Ogura Y , Ooka T , Sasamoto H , Park SH , Iyoda S , Kurokawa K , Morita H , Itoh K , Taylor TD , Hayashi T , Hattori M |
Ref : Journal of Bacteriology , 192 :1165 , 2010 |
Abstract : |
PubMedSearch : Toh_2010_J.Bacteriol_192_1165 |
PubMedID: 20008064 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecos5-d2nhh3 , yerpe-YBTT , ecolx-f4suw9 |
Title : Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042 - Chaudhuri_2010_PLoS.One_5_e8801 |
Author(s) : Chaudhuri RR , Sebaihia M , Hobman JL , Webber MA , Leyton DL , Goldberg MD , Cunningham AF , Scott-Tucker A , Ferguson PR , Thomas CM , Frankel G , Tang CM , Dudley EG , Roberts IS , Rasko DA , Pallen MJ , Parkhill J , Nataro JP , Thomson NR , Henderson IR |
Ref : PLoS ONE , 5 :e8801 , 2010 |
Abstract : |
PubMedSearch : Chaudhuri_2010_PLoS.One_5_e8801 |
PubMedID: 20098708 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-YfhR , yerpe-YBTT |
Title : Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348\/69 - Iguchi_2009_J.Bacteriol_191_347 |
Author(s) : Iguchi A , Thomson NR , Ogura Y , Saunders D , Ooka T , Henderson IR , Harris D , Asadulghani M , Kurokawa K , Dean P , Kenny B , Quail MA , Thurston S , Dougan G , Hayashi T , Parkhill J , Frankel G |
Ref : Journal of Bacteriology , 191 :347 , 2009 |
Abstract : |
PubMedSearch : Iguchi_2009_J.Bacteriol_191_347 |
PubMedID: 18952797 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR |
Title : Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5 - Fricke_2008_J.Bacteriol_190_6779 |
Author(s) : Fricke WF , Wright MS , Lindell AH , Harkins DM , Baker-Austin C , Ravel J , Stepanauskas R |
Ref : Journal of Bacteriology , 190 :6779 , 2008 |
Abstract : |
PubMedSearch : Fricke_2008_J.Bacteriol_190_6779 |
PubMedID: 18708504 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-estX , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecosm-b1lhu2 |
Title : The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes - Johnson_2007_J.Bacteriol_189_3228 |
Author(s) : Johnson TJ , Kariyawasam S , Wannemuehler Y , Mangiamele P , Johnson SJ , Doetkott C , Skyberg JA , Lynne AM , Johnson JR , Nolan LK |
Ref : Journal of Bacteriology , 189 :3228 , 2007 |
Abstract : |
PubMedSearch : Johnson_2007_J.Bacteriol_189_3228 |
PubMedID: 17293413 |
Gene_locus related to this paper: ecok1-a1acc0 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-YfhR , ecout-q1r7l6 , yerpe-YBTT |
Title : Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach - Chen_2006_Proc.Natl.Acad.Sci.U.S.A_103_5977 |
Author(s) : Chen SL , Hung CS , Xu J , Reigstad CS , Magrini V , Sabo A , Blasiar D , Bieri T , Meyer RR , Ozersky P , Armstrong JR , Fulton RS , Latreille JP , Spieth J , Hooton TM , Mardis ER , Hultgren SJ , Gordon JI |
Ref : Proc Natl Acad Sci U S A , 103 :5977 , 2006 |
Abstract : |
PubMedSearch : Chen_2006_Proc.Natl.Acad.Sci.U.S.A_103_5977 |
PubMedID: 16585510 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecout-q1r7l6 , yerpe-YBTT |
Title : Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536 - Hochhut_2006_Mol.Microbiol_61_584 |
Author(s) : Hochhut B , Wilde C , Balling G , Middendorf B , Dobrindt U , Brzuszkiewicz E , Gottschalk G , Carniel E , Hacker J |
Ref : Molecular Microbiology , 61 :584 , 2006 |
Abstract : |
PubMedSearch : Hochhut_2006_Mol.Microbiol_61_584 |
PubMedID: 16879640 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecolx-q707d7 , yerpe-YBTT |
Title : Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 - Perna_2001_Nature_409_529 |
Author(s) : Perna NT , Plunkett G, 3rd , Burland V , Mau B , Glasner JD , Rose DJ , Mayhew GF , Evans PS , Gregor J , Kirkpatrick HA , Posfai G , Hackett J , Klink S , Boutin A , Shao Y , Miller L , Grotbeck EJ , Davis NW , Lim A , Dimalanta ET , Potamousis KD , Apodaca J , Anantharaman TS , Lin J , Yen G , Schwartz DC , Welch RA , Blattner FR |
Ref : Nature , 409 :529 , 2001 |
Abstract : |
PubMedSearch : Perna_2001_Nature_409_529 |
PubMedID: 11206551 |
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1341 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |
Title : Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 - Hayashi_2001_DNA.Res_8_11 |
Author(s) : Hayashi T , Makino K , Ohnishi M , Kurokawa K , Ishii K , Yokoyama K , Han CG , Ohtsubo E , Nakayama K , Murata T , Tanaka M , Tobe T , Iida T , Takami H , Honda T , Sasakawa C , Ogasawara N , Yasunaga T , Kuhara S , Shiba T , Hattori M , Shinagawa H |
Ref : DNA Research , 8 :11 , 2001 |
Abstract : |
PubMedSearch : Hayashi_2001_DNA.Res_8_11 |
PubMedID: 11258796 |
Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1341 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |