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ecoli-ycjy

Escherichia coli hypothetical protein ycjy Dienelactone hydrolase domain protein

Comment

Other strains: Escherichia coli (and strains 06 NC101\; O157:H7\/EC4076\/TW14588\/EC869\/EC4486\/EC4401\/EC4196\/EC4501\/EC4113\/EC4115\/TW14359\; 53638\; MS 185-1\; B7A\; F11\; E110019\; MS 198-1\; MS 200-1\; MS 175-1\; MS 182-1\; MS 196-1\; FVEC1302\; FVEC1412\; E22\; B171\; B354\; MS 84-1\; B\/BL21-DE3\; MS 115-1\; MS 119-7\; MS 116-1\; B088\; KO11\; 3_2_53FAA\; W\; B185\; 101-1\; MS 107-1\; MS 69-1\; O17:K52:H18\/UMN026\/ExPEC\; UTI89\; 55989\; SE11\; B\/REL606\; O150:H5\/SE15\; B\/BL21\; O1:K1\/APEC\; K12\/MC4100\/BW2952\; O45:K1\/S88\/ExPEC\; K12\/DH10B\; O55:H7\/CB9615\/EPEC\; ATCC33849\/DSM4235\/NCIB12045\/K12DH1\; O44:H18\/042\/EAEC\; O6:K15:H31\/536\/UPEC\; O103:H2\/12009\/EHEC\; O127:H6\/E2348\/69\/EPEC\; O18:K1:H7\/IHE3034\/ExPEC\; O26:H11\/11368\/EHEC\; O139:H28\/E24377A\/ETEC\; O111:H-11128\/EHEC\; B\/BL21-DE3\; ATCC8739\/DSM1576\/Crooks\; SMS-3-5\/SECEC\; O9:H4\/HS\; MS 187-1\; 83972\; MS 45-1\; MS 115-1\; W\; 1-182-04_S3_C3\; 3-373-03_S4_C2) || Q8FHQ8 for Escherichia coli O6 strain || Q8X8M5 for O157:H7 Q8FHQ8 for coli O6

Relationship

Family : YcjY-like

Block : X

Position in NCBI Life Tree : Escherichia coli

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)

> cellular organisms N E > Bacteria N E > Proteobacteria N E > Gammaproteobacteria N E > Enterobacterales N E > Enterobacteriaceae N E > Escherichia N E > Escherichia coli N E

Molecular evidence

No mutation

No kinetic

No disease

No substrate

No inhibitor

Database

Sequence

Peptide

MRNGMMNNKV SFTNSNNPTI SLSAVIYFPP KFDETRQYQA IVLSHPGGGV KEQTAGTYAK KLAEKGFVTI AYDASYQGES GGEPRQLENP YIRTEDISAV IDYLTTLSYV DNTRIGAMGI CAGAGYTANA AIQDRRIKAI GTVSAVNIGS IFRNGWENNV KSIDALPYVE AGSNARTSDI SSGEYAIMPL APMKESDAPN EELRQAWEYY HTPRAQYPTA PGYATLRSLN QIITYDAYHM AEVYLTQPTQ IVAGSQAGSK WMSDDLYDRA SSQDKRYHIV EGANHMDLYD GKAYVAEAIS VLAPFFEETL

References (26)

Title : Increased expression of genes involved in uptake and degradation of murein tripeptide under nitrogen starvation in Escherichia coli - Choi_2016_FEMS.Microbiol.Lett_363_
Author(s) : Choi U , Park YH , Kim YR , Seok YJ , Lee CR
Ref : FEMS Microbiology Letters , 363 : , 2016
Abstract :
PubMedSearch : Choi_2016_FEMS.Microbiol.Lett_363_
PubMedID: 27231238
Gene_locus related to this paper: ecoli-ycjy

Title : Harnessing single cell sorting to identify cell division genes and regulators in bacteria - Burke_2013_PLoS.One_8_e60964
Author(s) : Burke C , Liu M , Britton W , Triccas JA , Thomas T , Smith AL , Allen S , Salomon R , Harry E
Ref : PLoS ONE , 8 :e60964 , 2013
Abstract :
PubMedSearch : Burke_2013_PLoS.One_8_e60964
PubMedID: 23565292
Gene_locus related to this paper: ecoli-ycjy

Title : Derivation of Escherichia coli O157:H7 from its O55:H7 precursor - Zhou_2010_PLoS.One_5_e8700
Author(s) : Zhou Z , Li X , Liu B , Beutin L , Xu J , Ren Y , Feng L , Lan R , Reeves PR , Wang L
Ref : PLoS ONE , 5 :e8700 , 2010
Abstract :
PubMedSearch : Zhou_2010_PLoS.One_5_e8700
PubMedID: 20090843
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR

Title : Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2 - Toh_2010_J.Bacteriol_192_1165
Author(s) : Toh H , Oshima K , Toyoda A , Ogura Y , Ooka T , Sasamoto H , Park SH , Iyoda S , Kurokawa K , Morita H , Itoh K , Taylor TD , Hayashi T , Hattori M
Ref : Journal of Bacteriology , 192 :1165 , 2010
Abstract :
PubMedSearch : Toh_2010_J.Bacteriol_192_1165
PubMedID: 20008064
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecos5-d2nhh3 , yerpe-YBTT , ecolx-f4suw9

Title : Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042 - Chaudhuri_2010_PLoS.One_5_e8801
Author(s) : Chaudhuri RR , Sebaihia M , Hobman JL , Webber MA , Leyton DL , Goldberg MD , Cunningham AF , Scott-Tucker A , Ferguson PR , Thomas CM , Frankel G , Tang CM , Dudley EG , Roberts IS , Rasko DA , Pallen MJ , Parkhill J , Nataro JP , Thomson NR , Henderson IR
Ref : PLoS ONE , 5 :e8801 , 2010
Abstract :
PubMedSearch : Chaudhuri_2010_PLoS.One_5_e8801
PubMedID: 20098708
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-YfhR , yerpe-YBTT

Title : Identification of protective and broadly conserved vaccine antigens from the genome of extraintestinal pathogenic Escherichia coli - Moriel_2010_Proc.Natl.Acad.Sci.U.S.A_107_9072
Author(s) : Moriel DG , Bertoldi I , Spagnuolo A , Marchi S , Rosini R , Nesta B , Pastorello I , Corea VA , Torricelli G , Cartocci E , Savino S , Scarselli M , Dobrindt U , Hacker J , Tettelin H , Tallon LJ , Sullivan S , Wieler LH , Ewers C , Pickard D , Dougan G , Fontana MR , Rappuoli R , Pizza M , Serino L
Ref : Proc Natl Acad Sci U S A , 107 :9072 , 2010
Abstract :
PubMedSearch : Moriel_2010_Proc.Natl.Acad.Sci.U.S.A_107_9072
PubMedID: 20439758
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-YfhR , ecout-q1r7l6 , yerpe-YBTT

Title : Genome sequences of Escherichia coli B strains REL606 and BL21(DE3) - Jeong_2009_J.Mol.Biol_394_644
Author(s) : Jeong H , Barbe V , Lee CH , Vallenet D , Yu DS , Choi SH , Couloux A , Lee SW , Yoon SH , Cattolico L , Hur CG , Park HS , Segurens B , Kim SC , Oh TK , Lenski RE , Studier FW , Daegelen P , Kim JF
Ref : Journal of Molecular Biology , 394 :644 , 2009
Abstract :
PubMedSearch : Jeong_2009_J.Mol.Biol_394_644
PubMedID: 19786035
Gene_locus related to this paper: eco57-b3a913 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR

Title : Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence - Kulasekara_2009_Infect.Immun_77_3713
Author(s) : Kulasekara BR , Jacobs M , Zhou Y , Wu Z , Sims E , Saenphimmachak C , Rohmer L , Ritchie JM , Radey M , McKevitt M , Freeman TL , Hayden H , Haugen E , Gillett W , Fong C , Chang J , Beskhlebnaya V , Waldor MK , Samadpour M , Whittam TS , Kaul R , Brittnacher M , Miller SI
Ref : Infect Immun , 77 :3713 , 2009
Abstract :
PubMedSearch : Kulasekara_2009_Infect.Immun_77_3713
PubMedID: 19564389
Gene_locus related to this paper: eco57-b3a913 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z0347 , ecoli-Z1341 , ecoli-Z1930 , ecoli-YfhR

Title : Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli - Ogura_2009_Proc.Natl.Acad.Sci.U.S.A_106_17939
Author(s) : Ogura Y , Ooka T , Iguchi A , Toh H , Asadulghani M , Oshima K , Kodama T , Abe H , Nakayama K , Kurokawa K , Tobe T , Hattori M , Hayashi T
Ref : Proc Natl Acad Sci U S A , 106 :17939 , 2009
Abstract :
PubMedSearch : Ogura_2009_Proc.Natl.Acad.Sci.U.S.A_106_17939
PubMedID: 19815525
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C2429 , ecoli-C4836 , ecoli-d7xp23 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR , yerpe-YBTT

Title : A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis - Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713
Author(s) : Leopold SR , Magrini V , Holt NJ , Shaikh N , Mardis ER , Cagno J , Ogura Y , Iguchi A , Hayashi T , Mellmann A , Karch H , Besser TE , Sawyer SA , Whittam TS , Tarr PI
Ref : Proc Natl Acad Sci U S A , 106 :8713 , 2009
Abstract :
PubMedSearch : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713
PubMedID: 19439656
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , neucr-q7sha3

Title : Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348\/69 - Iguchi_2009_J.Bacteriol_191_347
Author(s) : Iguchi A , Thomson NR , Ogura Y , Saunders D , Ooka T , Henderson IR , Harris D , Asadulghani M , Kurokawa K , Dean P , Kenny B , Quail MA , Thurston S , Dougan G , Hayashi T , Parkhill J , Frankel G
Ref : Journal of Bacteriology , 191 :347 , 2009
Abstract :
PubMedSearch : Iguchi_2009_J.Bacteriol_191_347
PubMedID: 18952797
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR

Title : Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths - Touchon_2009_PLoS.Genet_5_e1000344
Author(s) : Touchon M , Hoede C , Tenaillon O , Barbe V , Baeriswyl S , Bidet P , Bingen E , Bonacorsi S , Bouchier C , Bouvet O , Calteau A , Chiapello H , Clermont O , Cruveiller S , Danchin A , Diard M , Dossat C , Karoui ME , Frapy E , Garry L , Ghigo JM , Gilles AM , Johnson J , Le Bouguenec C , Lescat M , Mangenot S , Martinez-Jehanne V , Matic I , Nassif X , Oztas S , Petit MA , Pichon C , Rouy Z , Ruf CS , Schneider D , Tourret J , Vacherie B , Vallenet D , Medigue C , Rocha EP , Denamur E
Ref : PLoS Genet , 5 :e1000344 , 2009
Abstract :
PubMedSearch : Touchon_2009_PLoS.Genet_5_e1000344
PubMedID: 19165319
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C3633 , ecoli-C3636 , ecoli-C4836 , ecoli-d7xp23 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z0347 , ecoli-Z1930 , ecoli-YfhR , ecout-q1r7l6 , escfe-e9z855 , yerpe-YBTT , ecolx-e0qx45

Title : Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12 - Ferenci_2009_J.Bacteriol_191_4025
Author(s) : Ferenci T , Zhou Z , Betteridge T , Ren Y , Liu Y , Feng L , Reeves PR , Wang L
Ref : Journal of Bacteriology , 191 :4025 , 2009
Abstract :
PubMedSearch : Ferenci_2009_J.Bacteriol_191_4025
PubMedID: 19376874
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR

Title : The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates - Rasko_2008_J.Bacteriol_190_6881
Author(s) : Rasko DA , Rosovitz MJ , Myers GS , Mongodin EF , Fricke WF , Gajer P , Crabtree J , Sebaihia M , Thomson NR , Chaudhuri R , Henderson IR , Sperandio V , Ravel J
Ref : Journal of Bacteriology , 190 :6881 , 2008
Abstract :
PubMedSearch : Rasko_2008_J.Bacteriol_190_6881
PubMedID: 18676672
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z2445 , ecoli-YfhR

Title : The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse - Durfee_2008_J.Bacteriol_190_2597
Author(s) : Durfee T , Nelson R , Baldwin S , Plunkett G, 3rd , Burland V , Mau B , Petrosino JF , Qin X , Muzny DM , Ayele M , Gibbs RA , Csorgo B , Posfai G , Weinstock GM , Blattner FR
Ref : Journal of Bacteriology , 190 :2597 , 2008
Abstract :
PubMedSearch : Durfee_2008_J.Bacteriol_190_2597
PubMedID: 18245285
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR

Title : Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult - Oshima_2008_DNA.Res_15_375
Author(s) : Oshima K , Toh H , Ogura Y , Sasamoto H , Morita H , Park SH , Ooka T , Iyoda S , Taylor TD , Hayashi T , Itoh K , Hattori M
Ref : DNA Research , 15 :375 , 2008
Abstract :
PubMedSearch : Oshima_2008_DNA.Res_15_375
PubMedID: 18931093
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR

Title : Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5 - Fricke_2008_J.Bacteriol_190_6779
Author(s) : Fricke WF , Wright MS , Lindell AH , Harkins DM , Baker-Austin C , Ravel J , Stepanauskas R
Ref : Journal of Bacteriology , 190 :6779 , 2008
Abstract :
PubMedSearch : Fricke_2008_J.Bacteriol_190_6779
PubMedID: 18708504
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-estX , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecosm-b1lhu2

Title : The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes - Johnson_2007_J.Bacteriol_189_3228
Author(s) : Johnson TJ , Kariyawasam S , Wannemuehler Y , Mangiamele P , Johnson SJ , Doetkott C , Skyberg JA , Lynne AM , Johnson JR , Nolan LK
Ref : Journal of Bacteriology , 189 :3228 , 2007
Abstract :
PubMedSearch : Johnson_2007_J.Bacteriol_189_3228
PubMedID: 17293413
Gene_locus related to this paper: ecok1-a1acc0 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-YfhR , ecout-q1r7l6 , yerpe-YBTT

Title : Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach - Chen_2006_Proc.Natl.Acad.Sci.U.S.A_103_5977
Author(s) : Chen SL , Hung CS , Xu J , Reigstad CS , Magrini V , Sabo A , Blasiar D , Bieri T , Meyer RR , Ozersky P , Armstrong JR , Fulton RS , Latreille JP , Spieth J , Hooton TM , Mardis ER , Hultgren SJ , Gordon JI
Ref : Proc Natl Acad Sci U S A , 103 :5977 , 2006
Abstract :
PubMedSearch : Chen_2006_Proc.Natl.Acad.Sci.U.S.A_103_5977
PubMedID: 16585510
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecout-q1r7l6 , yerpe-YBTT

Title : Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536 - Hochhut_2006_Mol.Microbiol_61_584
Author(s) : Hochhut B , Wilde C , Balling G , Middendorf B , Dobrindt U , Brzuszkiewicz E , Gottschalk G , Carniel E , Hacker J
Ref : Molecular Microbiology , 61 :584 , 2006
Abstract :
PubMedSearch : Hochhut_2006_Mol.Microbiol_61_584
PubMedID: 16879640
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecolx-q707d7 , yerpe-YBTT

Title : Enzyme genomics: Application of general enzymatic screens to discover new enzymes - Kuznetsova_2005_FEMS.Microbiol.Rev_29_263
Author(s) : Kuznetsova E , Proudfoot M , Sanders SA , Reinking J , Savchenko A , Arrowsmith CH , Edwards AM , Yakunin AF
Ref : FEMS Microbiology Reviews , 29 :263 , 2005
Abstract :
PubMedSearch : Kuznetsova_2005_FEMS.Microbiol.Rev_29_263
PubMedID: 15808744
Gene_locus related to this paper: ecoli-yafa , ecoli-ybff , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yjfp , ecoli-ypfh , ecoli-yqia , ecoli-yuar

Title : Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli - Welch_2002_Proc.Natl.Acad.Sci.U.S.A_99_17020
Author(s) : Welch RA , Burland V , Plunkett G, 3rd , Redford P , Roesch P , Rasko D , Buckles EL , Liou SR , Boutin A , Hackett J , Stroud D , Mayhew GF , Rose DJ , Zhou S , Schwartz DC , Perna NT , Mobley HL , Donnenberg MS , Blattner FR
Ref : Proc Natl Acad Sci U S A , 99 :17020 , 2002
Abstract :
PubMedSearch : Welch_2002_Proc.Natl.Acad.Sci.U.S.A_99_17020
PubMedID: 12471157
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C3633 , ecoli-C3636 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , yerpe-YBTT , ecol6-a0a0h2vaz5

Title : Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 - Perna_2001_Nature_409_529
Author(s) : Perna NT , Plunkett G, 3rd , Burland V , Mau B , Glasner JD , Rose DJ , Mayhew GF , Evans PS , Gregor J , Kirkpatrick HA , Posfai G , Hackett J , Klink S , Boutin A , Shao Y , Miller L , Grotbeck EJ , Davis NW , Lim A , Dimalanta ET , Potamousis KD , Apodaca J , Anantharaman TS , Lin J , Yen G , Schwartz DC , Welch RA , Blattner FR
Ref : Nature , 409 :529 , 2001
Abstract :
PubMedSearch : Perna_2001_Nature_409_529
PubMedID: 11206551
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1341 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR

Title : Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 - Hayashi_2001_DNA.Res_8_11
Author(s) : Hayashi T , Makino K , Ohnishi M , Kurokawa K , Ishii K , Yokoyama K , Han CG , Ohtsubo E , Nakayama K , Murata T , Tanaka M , Tobe T , Iida T , Takami H , Honda T , Sasakawa C , Ogasawara N , Yasunaga T , Kuhara S , Shiba T , Hattori M , Shinagawa H
Ref : DNA Research , 8 :11 , 2001
Abstract :
PubMedSearch : Hayashi_2001_DNA.Res_8_11
PubMedID: 11258796
Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1341 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR

Title : The complete genome sequence of Escherichia coli K-12 - Blattner_1997_Science_277_1453
Author(s) : Blattner FR , Plunkett G, 3rd , Bloch CA , Perna NT , Burland V , Riley M , Collado-Vides J , Glasner JD , Rode CK , Mayhew GF , Gregor J , Davis NW , Kirkpatrick HA , Goeden MA , Rose DJ , Mau B , Shao Y
Ref : Science , 277 :1453 , 1997
Abstract :
PubMedSearch : Blattner_1997_Science_277_1453
PubMedID: 9278503
Gene_locus related to this paper: ecoli-Aes , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR

Title : A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map - Aiba_1996_DNA.Res_3_363
Author(s) : Aiba H , Baba T , Hayashi K , Inada T , Isono K , Itoh T , Kasai H , Kashimoto K , Kimura S , Kitakawa M , Kitagawa M , Makino K , Miki T , Mizobuchi K , Mori H , Mori T , Motomura K , Nakade S , Nakamura Y , Nashimoto H , Nishio Y , Oshima T , Saito N , Sampei G , Horiuchi T , et al.
Ref : DNA Research , 3 :363 , 1996
Abstract :
PubMedSearch : Aiba_1996_DNA.Res_3_363
PubMedID: 9097039
Gene_locus related to this paper: ecoli-ycjy