Title : Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum - McLean_2013_Proc.Natl.Acad.Sci.U.S.A_110_E2390 |
Author(s) : McLean JS , Lombardo MJ , Badger JH , Edlund A , Novotny M , Yee-Greenbaum J , Vyahhi N , Hall AP , Yang Y , Dupont CL , Ziegler MG , Chitsaz H , Allen AE , Yooseph S , Tesler G , Pevzner PA , Friedman RM , Nealson KH , Venter JC , Lasken RS |
Ref : Proc Natl Acad Sci U S A , 110 :E2390 , 2013 |
Abstract : |
PubMedSearch : McLean_2013_Proc.Natl.Acad.Sci.U.S.A_110_E2390 |
PubMedID: 23754396 |
Gene_locus related to this paper: 9bact-a0a0d2je38 |
Title : Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence - Chen_2011_BMC.Genomics_12_294 |
Author(s) : Chen Y , Stine OC , Badger JH , Gil AI , Nair GB , Nishibuchi M , Fouts DE |
Ref : BMC Genomics , 12 :294 , 2011 |
Abstract : |
PubMedSearch : Chen_2011_BMC.Genomics_12_294 |
PubMedID: 21645368 |
Gene_locus related to this paper: vibpa-PHAC , vibpa-VP0148 , vibpa-VP0409 , vibpa-VP0429 , vibpa-VP0693 , vibpa-VP0837 , vibpa-VP0869 , vibpa-VP1025 , vibpa-VP1181 , vibpa-VP1678 , vibpa-VP2790 , vibpa-VP2974 , vibpa-VPA0054 , vibpa-VPA0070 , vibpa-VPA0468 , vibpa-VPA1061 , vibpa-VPA1249 , vibpa-VPA1467 , vibpa-VPA1496 , vibpa-VPA1595 , vibpa-y674 , vibpa-y969 |
Title : Streptomyces turgidiscabies Car8 contains a modular pathogenicity island that shares virulence genes with other actinobacterial plant pathogens - Huguet-Tapia_2011_Plasmid_65_118 |
Author(s) : Huguet-Tapia JC , Badger JH , Loria R , Pettis GS |
Ref : Plasmid , 65 :118 , 2011 |
Abstract : |
PubMedSearch : Huguet-Tapia_2011_Plasmid_65_118 |
PubMedID: 21087627 |
Gene_locus related to this paper: 9acto-l7ffg2 , 9acto-l7fb12 , 9acto-l7f9l5 , 9acto-l7f9j6 , 9acto-l7exi7 , 9acto-l7fdw3 , 9acto-l7fde3 , 9acto-l7ez89 , 9acto-l7esm9 , 9acto-l7fet0 , 9acto-l7f9t1 , 9actn-l7fav1 , 9actn-l7f9n9 , 9actn-l7evr4 , 9actn-l7f5u9 |
Title : The complete genome sequence of Haloferax volcanii DS2, a model archaeon - Hartman_2010_PLoS.One_5_e9605 |
Author(s) : Hartman AL , Norais C , Badger JH , Delmas S , Haldenby S , Madupu R , Robinson J , Khouri H , Ren Q , Lowe TM , Maupin-Furlow J , Pohlschroder M , Daniels C , Pfeiffer F , Allers T , Eisen JA |
Ref : PLoS ONE , 5 :e9605 , 2010 |
Abstract : |
PubMedSearch : Hartman_2010_PLoS.One_5_e9605 |
PubMedID: 20333302 |
Gene_locus related to this paper: halvd-d4gpd7 , halvd-d4gtr7 , halvd-d4gug3 , halvd-d4gug9 , halvd-d4gz20 , halvd-metxa |
Title : Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum - Wu_2009_PLoS.One_4_e4207 |
Author(s) : Wu D , Raymond J , Wu M , Chatterji S , Ren Q , Graham JE , Bryant DA , Robb F , Colman A , Tallon LJ , Badger JH , Madupu R , Ward NL , Eisen JA |
Ref : PLoS ONE , 4 :e4207 , 2009 |
Abstract : |
PubMedSearch : Wu_2009_PLoS.One_4_e4207 |
PubMedID: 19148287 |
Gene_locus related to this paper: therp-b9kxz7 , therp-b9l2i8 , therp-b9l396 |
Title : Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice - Fouts_2008_PLoS.Genet_4_e1000141 |
Author(s) : Fouts DE , Tyler HL , DeBoy RT , Daugherty S , Ren Q , Badger JH , Durkin AS , Huot H , Shrivastava S , Kothari S , Dodson RJ , Mohamoud Y , Khouri H , Roesch LF , Krogfelt KA , Struve C , Triplett EW , Methe BA |
Ref : PLoS Genet , 4 :e1000141 , 2008 |
Abstract : |
PubMedSearch : Fouts_2008_PLoS.Genet_4_e1000141 |
PubMedID: 18654632 |
Gene_locus related to this paper: klep3-b5xp56 , klep3-b5xqp6 , klep3-b5xzn5 , klep3-b5xzy8 , klep3-bioh , klep3-menh , klep7-a6t8q2 , klep7-a6t9v6 , klep7-a6tb98 , klep7-mhpc , klep7-y243 , klep7-y1077 , klepn-c4x8q1 , klepn-w8uta0 , klep3-rutd |
Title : Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus - Myers_2007_Nat.Biotechnol_25_569 |
Author(s) : Myers GS , Parker D , Al-Hasani K , Kennan RM , Seemann T , Ren Q , Badger JH , Selengut JD , DeBoy RT , Tettelin H , Boyce JD , McCarl VP , Han X , Nelson WC , Madupu R , Mohamoud Y , Holley T , Fedorova N , Khouri H , Bottomley SP , Whittington RJ , Adler B , Songer JG , Rood JI , Paulsen IT |
Ref : Nat Biotechnol , 25 :569 , 2007 |
Abstract : |
PubMedSearch : Myers_2007_Nat.Biotechnol_25_569 |
PubMedID: 17468768 |
Gene_locus related to this paper: dicnv-a5evg0 , dicnv-a5ewn0 , dicnv-a5ewp3 |
Title : Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment - Palenik_2006_Proc.Natl.Acad.Sci.U.S.A_103_13555 |
Author(s) : Palenik B , Ren Q , Dupont CL , Myers GS , Heidelberg JF , Badger JH , Madupu R , Nelson WC , Brinkac LM , Dodson RJ , Durkin AS , Daugherty SC , Sullivan SA , Khouri H , Mohamoud Y , Halpin R , Paulsen IT |
Ref : Proc Natl Acad Sci U S A , 103 :13555 , 2006 |
Abstract : |
PubMedSearch : Palenik_2006_Proc.Natl.Acad.Sci.U.S.A_103_13555 |
PubMedID: 16938853 |
Gene_locus related to this paper: syns3-q0i8r7 , syns3-q0i9w2 , syns3-q0i996 , syns3-q0ia13 , syns3-q0ia55 , syns3-q0ib73 , syns3-q0ibm2 , syns3-q0ibp1 , syns3-q0iby1 , syns9-q3ax89 , syns3-q0ibv4 |
Title : Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote - Eisen_2006_PLoS.Biol_4_e286 |
Author(s) : Eisen JA , Coyne RS , Wu M , Wu D , Thiagarajan M , Wortman JR , Badger JH , Ren Q , Amedeo P , Jones KM , Tallon LJ , Delcher AL , Salzberg SL , Silva JC , Haas BJ , Majoros WH , Farzad M , Carlton JM , Smith RK, Jr. , Garg J , Pearlman RE , Karrer KM , Sun L , Manning G , Elde NC , Turkewitz AP , Asai DJ , Wilkes DE , Wang Y , Cai H , Collins K , Stewart BA , Lee SR , Wilamowska K , Weinberg Z , Ruzzo WL , Wloga D , Gaertig J , Frankel J , Tsao CC , Gorovsky MA , Keeling PJ , Waller RF , Patron NJ , Cherry JM , Stover NA , Krieger CJ , del Toro C , Ryder HF , Williamson SC , Barbeau RA , Hamilton EP , Orias E |
Ref : PLoS Biol , 4 :e286 , 2006 |
Abstract : |
PubMedSearch : Eisen_2006_PLoS.Biol_4_e286 |
PubMedID: 16933976 |
Gene_locus related to this paper: tetts-i7mam3 , tetts-i7ml33 |
Title : Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species - Fouts_2005_PLoS.Biol_3_e15 |
Author(s) : Fouts DE , Mongodin EF , Mandrell RE , Miller WG , Rasko DA , Ravel J , Brinkac LM , DeBoy RT , Parker CT , Daugherty SC , Dodson RJ , Durkin AS , Madupu R , Sullivan SA , Shetty JU , Ayodeji MA , Shvartsbeyn A , Schatz MC , Badger JH , Fraser CM , Nelson KE |
Ref : PLoS Biol , 3 :e15 , 2005 |
Abstract : |
PubMedSearch : Fouts_2005_PLoS.Biol_3_e15 |
PubMedID: 15660156 |
Gene_locus related to this paper: camje-CJ0796C , camjr-q5ht69 , camjr-q5ht95 , camjr-q5huc7 , camjr-q5hwg6 , camju-a3yll6 |